Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014286

Physical Location & Seq

Genomic Coordinates Reverse (-)

86489233 .. 86492341

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGCTTCCGCGGCGATATTCTCTTCGTTACGGCGGCGGAGGTCGCCGTCTCTGGAGGCGTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTGGTTTCGGTGACGGCGGAGATTGTGTCGACGTTTGCAGACAAGTTGTTCTATTTCCAGAGGCGGAATTCGAGGTCGTTGGTCCGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTAAACGACTCCGCCGGGTCAACTCTGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATTCTCCTGGATTACTGCGCCCAGTCCAGTAAGCTCTGGCTCTTGCTCCAGCACCATCCGATTTCCGGCCATTTCCACGACCTGAATCAGGAAATCTCGACCCTTCTGGATGTTTTTCCGATTGACGAGGTTGAATTGGGGGAGGACGTGAGGGAGCAGATTGAGCTTCTGCAGAGGCAGGCGAGGAGGGCGAGGCTGTTGATCGACGAAGCCGACGAGGAGTTGAGGATTCAGCTGTTTAGTTTCCTAGATGAATTCGACAAGGGAAGGGTGCCGGATTCGGATGACGTGTGGGTGTTTTTCGATCAGAGATTGGGGATTAGGGATGCCAAGAGCTGCAGACATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCTACAGTGTCTGTGCTTAATGGGTTTGTGGCGTTTACAAGGTATTGCAGGTTCTTGCTTTTCGGATTCGAGGAGGATGAGGTGGGAGTGGGAGTGGGAGTTGGGGGTCAGAGGAAGCCCAGGAAGGGTTTGATTAGTCAGGAGATTGCTGAGACTTTTATTACGATTCCCAAGGATTTTTGCTGCCCTATTAGTTTGGATTTGATGAGAGAGCCTGTGATAATCCCGACTGGGCAGACGTATGATCGGATTTCGATTTCGAGGTGGCTGGAAGAGGGGCATTGTACTTGTCCGAAAACAGGTCAAATGCTGCCTAACACCAGGCTTGTTCCGAATCGGGCGCTGAGGAATTTGATCTTGCAGTGGTGCACTGCTTATGGAGTTCCTTATGATGCGCCCGAGTGTACTGAAGCATCAGCAGAAAGCTTTGCAGGGGCTTCTCCCTCTAAGGCTGCACTTGCAGCCAACAGAGCTACAGCAGGGCTTTTGATCAAACGGCTAGCGGAGGAGGGATCGACATGTGGACAGACTATAGCTGCTCGGGAGATTCGGTTGTTGGCCAAGACTGGAAGAGAGAACCGTGCTTTCATTGCGGAAGCTGGGGCAATTCCCCATCTTCGGAAGCTGCTTTCTTCTCCAAACTCGGTTGCACAAGAGAACTCTGTGACGGCAATGCTTAACCTGTCGATTTATGACAAAAACAAAAGCAGGATTATGGATGAAGAAGGGTGTTTGGGATCGATTGTCAATGTGCTGAGGTTTGGGCACACAACAGAAGCAAGGGAGAATGCCGCCGCAACATTGTTTAGTCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCGGATGAGGAAGGGGGAATTGAAGCCTTGGCAGGGTTGTTGTTACATGGCACCCAAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTTAACTTGTCCACGCACACAGAAAATTGCGCGAGAATGGTTGAGGCTGGGGCTGTAACAGCATTGGTAAGTGCATTGGGAATTGAAGGTGTTGCTGAGGAATCAGCAGGTGCATTGGCCTTGATTGTTAGGCAGCCAAGTGGAGCTACAGCAGTAGGAAAAGAGGAAATGGCAGTGGCTGGTTTAATAGGGATGATGCGTTGCGGGACTCCAAGGGGTAAAGAAAATGCAGTTGCAGCTTTGCTTGAGTTGTGTCGGCATGGTGGAGCTGCAGCAACTGAGAGAGTAGTCAAGGCACCATCTTTGGCTGGTTTGCTTCAGACGCTGCTTTTCACCGGTACAAAGAGGGCAAGAAGAAAGGCGGCGTCTCTTGCTAGAGTGTTTCAAAGGTGTGAGAATGGGTCGACAATGCATTATGGTGGTCTCGGAGTAGGATACGCATTTGCAGGCAACTCGGCTGCAAATCGTGATACAAGTTTCGTTGGTGATGTCTCAGTGCAAATGTCCATTTCAGTGCCTGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

720

Amino Acids

78.61

Weight (kDa)

6.05

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	56 - 167	6.3e-14	PUB10-like, N-terminal domain
U-box	PF04564	291 - 358	2.5e-19	U-box domain
ARM_PUB	PF25598	398 - 675	6.3e-18	Plant U-box protein ARM repeat region
Arm	PF00514	427 - 464	1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29340
fragaria_vesca	FvH4_3g07220
malus_domestica	MD00G1008100.v1.1 MD10G1274600.v1.1
prunus_persica	Prupe.4G067800_v2.0.a1
pyrus_communis	pycom05g27330 pycom10g22910
rosa_chinensis	RchiOBHm_Chr5g0011931
rosa_laevigata	RLG00000031870
rosa_multiflora	Rmu_ssc0000228.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064660
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091600 Rh5BG087400 Rh5CG101300 Rh5DG088000
rosa_wichuraiana	Rw5G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1733
Acc36I	ACCTGC	2 cut(s)	744, 1733
AccB1I	GGYRCC	3 cut(s)	580, 1598, 1930
AccI	GTMKAC	2 cut(s)	134, 2039
AccII	CGCG	2 cut(s)	11, 1667
AccIII	TCCGGA	1 cut(s)	189
AclWI	GGATC	3 cut(s)	297, 1225, 1450
AcoI	YGGCCR	2 cut(s)	376, 1263
AcsI	RAATTY	3 cut(s)	172, 563, 1054
AcuI	CTGAAG	2 cut(s)	1134, 1937
AcyI	GRCGYC	1 cut(s)	2000
AfaI	GTAC	5 cut(s)	99, 299, 991, 1111, 1975
AfiI	CCNNNNNNNGG	6 cut(s)	374, 397, 830, 1004, 1323, 1581
AflIII	ACRYGT	2 cut(s)	597, 1223
AgeI	ACCGGT	1 cut(s)	1970
AgsI	TTSAA	4 cut(s)	443, 1571, 1721, 2021
AjiI	CACGTC	3 cut(s)	88, 457, 598
AjnI	CCWGG	3 cut(s)	315, 824, 1025
Alw21I	GWGCWC	1 cut(s)	1076
Alw26I	GTCTC	5 cut(s)	54, 851, 2007, 2063, 2131
Alw44I	GTGCAC	1 cut(s)	1072
AlwI	GGATC	3 cut(s)	297, 1225, 1450
AlwNI	CAGNNNCTG	6 cut(s)	106, 716, 1814, 1913, 1960, 2153
Ama87I	CYCGRG	2 cut(s)	1103, 1245
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	3 cut(s)	376, 1263, 1752
ApaLI	GTGCAC	1 cut(s)	1072
ApoI	RAATTY	3 cut(s)	172, 563, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsiGI	ACCGGT	1 cut(s)	1970
AspLEI	GCGC	5 cut(s)	94, 329, 1048, 1102, 1667
AspS9I	GGNCC	2 cut(s)	76, 187
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	4 cut(s)	127, 277, 1960, 2132
AsuNHI	GCTAGC	1 cut(s)	1204
AvaI	CYCGRG	2 cut(s)	1103, 1245
AvaII	GGWCC	2 cut(s)	76, 187
BaeGI	GKGCMC	2 cut(s)	1076, 1473
BalI	TGGCCA	1 cut(s)	1265
BanI	GGYRCC	3 cut(s)	580, 1598, 1930
BauI	CACGAG	2 cut(s)	209, 689
Bbv12I	GWGCWC	1 cut(s)	1076
BbvCI	CCTCAGC	3 cut(s)	1049, 1460, 1731
BccI	CCATC	3 cut(s)	372, 1326, 1942
BceAI	ACGGC	7 cut(s)	31, 47, 135, 238, 276, 1217, 1389
BcgI	CGANNNNNNTGC	2 cut(s)	2070, 2104
BciT130I	CCWGG	3 cut(s)	317, 826, 1027
BciVI	GTATCC	1 cut(s)	2063
BclI	TGATCA	1 cut(s)	1194
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	5 cut(s)	54, 851, 2007, 2063, 2131
BfaI	CTAG	3 cut(s)	557, 1205, 2010
BfmI	CTRYAG	8 cut(s)	479, 646, 708, 1179, 1236, 1521, 1782, 1905
BfoI	RGCGCY	2 cut(s)	95, 1049
BfuAI	ACCTGC	2 cut(s)	744, 1733
BfuI	GTATCC	1 cut(s)	2063
Bme1390I	CCNGG	4 cut(s)	241, 317, 826, 1027
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	2 cut(s)	1103, 1245
BmgBI	CACGTC	3 cut(s)	88, 457, 598
BmgT120I	GGNCC	2 cut(s)	76, 187
BmiI	GGNNCC	3 cut(s)	582, 1600, 1932
BmrFI	CCNGG	4 cut(s)	241, 317, 826, 1027
BmrI	ACTGGG	2 cut(s)	325, 945
BmsI	GCATC	5 cut(s)	625, 1087, 1127, 1609, 1821
BmtI	GCTAGC	1 cut(s)	1208
BmuI	ACTGGG	2 cut(s)	325, 945
BpmI	CTGGAG	2 cut(s)	74, 341
Bpu10I	CCTNAGC	3 cut(s)	1049, 1460, 1731
BpuEI	CTTGAG	2 cut(s)	260, 1901
BpuMI	CCSGG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	1445
BsaHI	GRCGYC	1 cut(s)	2000
BsaI	GGTCTC	1 cut(s)	2063
BsaJI	CCNNGG	6 cut(s)	9, 254, 824, 876, 1575, 1847
BsaWI	WCCGGW	3 cut(s)	70, 189, 1970
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 783, 789, 813, 819, 1241, 1271
Bsc4I	CCNNNNNNNGG	6 cut(s)	374, 397, 830, 1004, 1323, 1581
Bse118I	RCCGGY	1 cut(s)	1970
Bse1I	ACTGG	4 cut(s)	331, 336, 940, 1276
Bse3DI	GCAATG	2 cut(s)	1293, 1383
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	3 cut(s)	317, 826, 1027
BseCI	ATCGAT	1 cut(s)	1445
BseDI	CCNNGG	6 cut(s)	9, 254, 824, 876, 1575, 1847
BseLI	CCNNNNNNNGG	6 cut(s)	374, 397, 830, 1004, 1323, 1581
BseMI	GCAATG	2 cut(s)	1293, 1383
BseMII	CTCAG	6 cut(s)	846, 1040, 1451, 1722, 1905, 2142
BseNI	ACTGG	4 cut(s)	331, 336, 940, 1276
BseRI	GAGGAG	4 cut(s)	508, 542, 791, 1226
BseSI	GKGCMC	2 cut(s)	1076, 1473
BseYI	CCCAGC	2 cut(s)	1304, 1682
BsgI	GTGCAG	1 cut(s)	1143
Bsh1236I	CGCG	2 cut(s)	11, 1667
BshFI	GGCC	3 cut(s)	378, 1265, 1754
BshNI	GGYRCC	3 cut(s)	580, 1598, 1930
BshTI	ACCGGT	1 cut(s)	1970
BshVI	ATCGAT	1 cut(s)	1445
BsiHKAI	GWGCWC	1 cut(s)	1076
BsiHKCI	CYCGRG	2 cut(s)	1103, 1245
BsiSI	CCGG	6 cut(s)	71, 190, 240, 375, 584, 1971
BslFI	GGGAC	1 cut(s)	1855
BslI	CCNNNNNNNGG	6 cut(s)	374, 397, 830, 1004, 1323, 1581
BsmAI	GTCTC	5 cut(s)	54, 851, 2007, 2063, 2131
BsmBI	CGTCTC	2 cut(s)	54, 2007
BsmFI	GGGAC	1 cut(s)	1855
BsmI	GAATGC	1 cut(s)	1498
BsnI	GGCC	3 cut(s)	378, 1265, 1754
Bso31I	GGTCTC	1 cut(s)	2063
BsoBI	CYCGRG	2 cut(s)	1103, 1245
Bsp1286I	GDGCHC	2 cut(s)	1076, 1473
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 297
Bsp143I	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
BspANI	GGCC	3 cut(s)	378, 1265, 1754
BspCNI	CTCAG	6 cut(s)	847, 1041, 1452, 1723, 1906, 2141
BspDI	ATCGAT	1 cut(s)	1445
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	11, 1667
BspHI	TCATGA	1 cut(s)	1528
BspLI	GGNNCC	3 cut(s)	582, 1600, 1932
BspMAI	CTGCAG	4 cut(s)	483, 650, 1525, 1909
BspMI	ACCTGC	2 cut(s)	744, 1733
BspOI	GCTAGC	1 cut(s)	1208
BspPI	GGATC	3 cut(s)	297, 1225, 1450
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	3 cut(s)	580, 1598, 1930
BspTNI	GGTCTC	1 cut(s)	2063
BsrDI	GCAATG	2 cut(s)	1293, 1383
BsrFI	RCCGGY	1 cut(s)	1970
BsrGI	TGTACA	2 cut(s)	97, 297
BsrI	ACTGG	4 cut(s)	331, 336, 940, 1276
BssAI	RCCGGY	1 cut(s)	1970
BssECI	CCNNGG	6 cut(s)	9, 254, 824, 876, 1575, 1847
BssMI	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
BssNI	GRCGYC	1 cut(s)	2000
BssSI	CACGAG	2 cut(s)	209, 689
BssT1I	CCWWGG	3 cut(s)	876, 1575, 1847
Bst2BI	CACGAG	2 cut(s)	209, 689
Bst2UI	CCWGG	3 cut(s)	317, 826, 1027
Bst4CI	ACNGT	2 cut(s)	712, 1286
Bst6I	CTCTTC	5 cut(s)	28, 666, 972, 1270, 1535
BstACI	GRCGYC	1 cut(s)	2000
BstAUI	TGTACA	2 cut(s)	97, 297
BstC8I	GCNNGC	3 cut(s)	489, 1206, 2083
BstDEI	CTNAG	7 cut(s)	855, 1049, 1152, 1460, 1731, 1914, 2128
BstDSI	CCRYGG	2 cut(s)	9, 254
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstFNI	CGCG	2 cut(s)	11, 1667
BstH2I	RGCGCY	2 cut(s)	95, 1049
BstHHI	GCGC	5 cut(s)	94, 329, 1048, 1102, 1667
BstKTI	GATC	8 cut(s)	305, 513, 616, 952, 1062, 1197, 1220, 1445
BstMAI	GTCTC	5 cut(s)	54, 851, 2007, 2063, 2131
BstMBI	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
BstNI	CCWGG	3 cut(s)	317, 826, 1027
BstNSI	RCATGY	1 cut(s)	1227
BstSCI	CCNGG	4 cut(s)	239, 315, 824, 1025
BstSFI	CTRYAG	8 cut(s)	479, 646, 708, 1179, 1236, 1521, 1782, 1905
BstSLI	GKGCMC	2 cut(s)	1076, 1473
BstUI	CGCG	2 cut(s)	11, 1667
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	1445
BsuI	GTATCC	1 cut(s)	2063
BsuRI	GGCC	3 cut(s)	378, 1265, 1754
BsuTUI	ATCGAT	1 cut(s)	1445
BtgI	CCRYGG	2 cut(s)	9, 254
BtrI	CACGTC	3 cut(s)	88, 457, 598
BtsI	GCAGTG	3 cut(s)	1073, 1074, 1815
BtsIMutI	CAGTG	6 cut(s)	717, 1073, 1074, 1815, 2136, 2154
BveI	ACCTGC	2 cut(s)	744, 1733
Cac8I	GCNNGC	3 cut(s)	489, 1206, 2083
CaiI	CAGNNNCTG	6 cut(s)	106, 716, 1814, 1913, 1960, 2153
CciI	TCATGA	1 cut(s)	1528
CfoI	GCGC	5 cut(s)	94, 329, 1048, 1102, 1667
Cfr10I	RCCGGY	1 cut(s)	1970
Cfr13I	GGNCC	2 cut(s)	76, 187
Cfr42I	CCGCGG	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	1445
CseI	GACGC	2 cut(s)	1966, 1989
Csp6I	GTAC	5 cut(s)	98, 298, 990, 1110, 1974
CspAI	ACCGGT	1 cut(s)	1970
CviAII	CATG	5 cut(s)	653, 1224, 1529, 1595, 1895
CviQI	GTAC	5 cut(s)	98, 298, 990, 1110, 1974
DdeI	CTNAG	7 cut(s)	855, 1049, 1152, 1460, 1731, 1914, 2128
DpnI	GATC	8 cut(s)	304, 512, 615, 951, 1061, 1196, 1219, 1444
DpnII	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
DraI	TTTAAA	1 cut(s)	228
EaeI	YGGCCR	2 cut(s)	376, 1263
Eam1104I	CTCTTC	5 cut(s)	28, 666, 972, 1270, 1535
EarI	CTCTTC	5 cut(s)	28, 666, 972, 1270, 1535
EciI	GGCGGA	4 cut(s)	52, 137, 184, 226
Eco130I	CCWWGG	3 cut(s)	876, 1575, 1847
Eco31I	GGTCTC	1 cut(s)	2063
Eco47I	GGWCC	2 cut(s)	76, 187
Eco57I	CTGAAG	2 cut(s)	1134, 1937
Eco88I	CYCGRG	2 cut(s)	1103, 1245
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	2 cut(s)	172, 563
EcoRII	CCWGG	3 cut(s)	315, 824, 1025
EcoT14I	CCWWGG	3 cut(s)	876, 1575, 1847
EcoT22I	ATGCAT	1 cut(s)	2049
ErhI	CCWWGG	3 cut(s)	876, 1575, 1847
Esp3I	CGTCTC	2 cut(s)	54, 2007
FaeI	CATG	5 cut(s)	656, 1227, 1532, 1598, 1898
FaqI	GGGAC	1 cut(s)	1855
FatI	CATG	5 cut(s)	652, 1223, 1528, 1594, 1894
FauI	CCCGC	1 cut(s)	1832
FbaI	TGATCA	1 cut(s)	1194
FblI	GTMKAC	2 cut(s)	134, 2039
FspBI	CTAG	3 cut(s)	557, 1205, 2010
GlaI	GCGC	5 cut(s)	93, 328, 1047, 1101, 1666
GsaI	CCCAGC	2 cut(s)	1308, 1686
GsuI	CTGGAG	2 cut(s)	74, 341
HaeII	RGCGCY	2 cut(s)	95, 1049
HaeIII	GGCC	3 cut(s)	378, 1265, 1754
HapII	CCGG	6 cut(s)	71, 190, 240, 375, 584, 1971
HgaI	GACGC	2 cut(s)	1966, 1989
HhaI	GCGC	5 cut(s)	94, 329, 1048, 1102, 1667
Hin1I	GRCGYC	1 cut(s)	2000
Hin1II	CATG	5 cut(s)	656, 1227, 1532, 1598, 1898
Hin6I	GCGC	5 cut(s)	92, 327, 1046, 1100, 1665
HinP1I	GCGC	5 cut(s)	92, 327, 1046, 1100, 1665
HincII	GTYRAC	3 cut(s)	135, 246, 2040
HindII	GTYRAC	3 cut(s)	135, 246, 2040
HindIII	AAGCTT	1 cut(s)	1129
HpaII	CCGG	6 cut(s)	71, 190, 240, 375, 584, 1971
HphI	GGTGA	4 cut(s)	127, 277, 1960, 2132
Hpy99I	CGWCG	4 cut(s)	89, 139, 518, 527
HpyAV	CCTTC	7 cut(s)	422, 570, 823, 1424, 1553, 1609, 1715
HpyCH4III	ACNGT	2 cut(s)	712, 1286
HpyCH4IV	ACGT	5 cut(s)	87, 137, 456, 597, 944
HpyF3I	CTNAG	7 cut(s)	855, 1049, 1152, 1460, 1731, 1914, 2128
HpySE526I	ACGT	5 cut(s)	87, 137, 456, 597, 944
Hsp92I	GRCGYC	1 cut(s)	2000
Hsp92II	CATG	5 cut(s)	656, 1227, 1532, 1598, 1898
HspAI	GCGC	5 cut(s)	92, 327, 1046, 1100, 1665
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	1194
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	6 cut(s)	73, 280, 360, 463, 1778, 1901
LweI	GCATC	5 cut(s)	625, 1087, 1127, 1609, 1821
MaeI	CTAG	3 cut(s)	557, 1205, 2010
MaeII	ACGT	5 cut(s)	87, 137, 456, 597, 944
MaeIII	GTNAC	6 cut(s)	27, 115, 1369, 1590, 1624, 1690
MalI	GATC	8 cut(s)	304, 512, 615, 951, 1061, 1196, 1219, 1444
MboI	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
MboII	GAAGA	9 cut(s)	15, 683, 989, 1287, 1313, 1329, 1439, 1552, 2001
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	1076, 1473
MlsI	TGGCCA	1 cut(s)	1265
MluCI	AATT	8 cut(s)	172, 443, 563, 1054, 1311, 1566, 1660, 1716
MluNI	TGGCCA	1 cut(s)	1265
MlyI	GAGTC	4 cut(s)	97, 227, 230, 1837
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	1265
Mph1103I	ATGCAT	1 cut(s)	2049
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	1265
MseI	TTAA	5 cut(s)	227, 723, 1383, 1638, 1820
MslI	CAYNNNNRTG	2 cut(s)	2052, 2147
Msp20I	TGGCCA	1 cut(s)	1265
MspA1I	CMGCKG	2 cut(s)	11, 544
MspI	CCGG	6 cut(s)	71, 190, 240, 375, 584, 1971
MspR9I	CCNGG	4 cut(s)	241, 317, 826, 1027
Mva1269I	GAATGC	1 cut(s)	1498
MvaI	CCWGG	3 cut(s)	317, 826, 1027
MvnI	CGCG	2 cut(s)	11, 1667
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
NheI	GCTAGC	1 cut(s)	1204
NlaIII	CATG	5 cut(s)	656, 1227, 1532, 1598, 1898
NlaIV	GGNNCC	3 cut(s)	582, 1600, 1932
NmeAIII	GCCGAG	1 cut(s)	2069
NmuCI	GTSAC	3 cut(s)	115, 1369, 1624
NsiI	ATGCAT	1 cut(s)	2049
NspI	RCATGY	1 cut(s)	1227
PagI	TCATGA	1 cut(s)	1528
PaqCI	CACCTGC	1 cut(s)	1733
PciI	ACATGT	1 cut(s)	1223
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 522
PctI	GAATGC	1 cut(s)	1498
PfoI	TCCNGGA	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	1970
PleI	GAGTC	4 cut(s)	97, 227, 229, 1837
PpsI	GAGTC	4 cut(s)	97, 227, 229, 1837
PscI	ACATGT	1 cut(s)	1223
Psp6I	CCWGG	3 cut(s)	315, 824, 1025
PspFI	CCCAGC	2 cut(s)	1304, 1682
PspGI	CCWGG	3 cut(s)	315, 824, 1025
PspN4I	GGNNCC	3 cut(s)	582, 1600, 1932
PspPI	GGNCC	2 cut(s)	76, 187
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PstI	CTGCAG	4 cut(s)	483, 650, 1525, 1909
PstNI	CAGNNNCTG	6 cut(s)	106, 716, 1814, 1913, 1960, 2153
PsuI	RGATCY	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	5 cut(s)	99, 299, 991, 1111, 1975
RsaNI	GTAC	5 cut(s)	98, 298, 990, 1110, 1974
RseI	CAYNNNNRTG	2 cut(s)	2052, 2147
SacII	CCGCGG	1 cut(s)	12
SalI	GTCGAC	2 cut(s)	133, 2038
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	227, 723, 1383, 1638, 1820
Sau3AI	GATC	8 cut(s)	302, 510, 613, 949, 1059, 1194, 1217, 1442
Sau96I	GGNCC	2 cut(s)	76, 187
SchI	GAGTC	4 cut(s)	97, 227, 230, 1837
ScrFI	CCNGG	4 cut(s)	241, 317, 826, 1027
SduI	GDGCHC	2 cut(s)	1076, 1473
SfaNI	GCATC	5 cut(s)	625, 1087, 1127, 1609, 1821
SfcI	CTRYAG	8 cut(s)	479, 646, 708, 1179, 1236, 1521, 1782, 1905
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	76, 187
SmiMI	CAYNNNNRTG	2 cut(s)	2052, 2147
SmlI	CTYRAG	2 cut(s)	275, 1880
SmoI	CTYRAG	2 cut(s)	275, 1880
Sse9I	AATT	8 cut(s)	172, 443, 563, 1054, 1311, 1566, 1660, 1716
SspMI	CTAG	3 cut(s)	557, 1205, 2010
StyD4I	CCNGG	4 cut(s)	239, 315, 824, 1025
StyI	CCWWGG	3 cut(s)	876, 1575, 1847
TaaI	ACNGT	2 cut(s)	712, 1286
TaiI	ACGT	5 cut(s)	90, 140, 459, 600, 947
TasI	AATT	8 cut(s)	172, 443, 563, 1054, 1311, 1566, 1660, 1716
TatI	WGTACW	4 cut(s)	97, 297, 989, 1109
TauI	GCSGC	5 cut(s)	14, 37, 1499, 1502, 2000
Tru1I	TTAA	5 cut(s)	227, 723, 1383, 1638, 1820
Tru9I	TTAA	5 cut(s)	227, 723, 1383, 1638, 1820
TscAI	CASTG	6 cut(s)	717, 1073, 1081, 1815, 2136, 2154
TseFI	GTSAC	3 cut(s)	115, 1369, 1624
Tsp45I	GTSAC	3 cut(s)	115, 1369, 1624
TspDTI	ATGAA	4 cut(s)	576, 1282, 1440, 1517
TspRI	CASTG	6 cut(s)	717, 1073, 1081, 1815, 2136, 2154
VneI	GTGCAC	1 cut(s)	1072
VpaK11BI	GGWCC	2 cut(s)	76, 187
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	172, 563, 1054
XceI	RCATGY	1 cut(s)	1227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmiI	GTMKAC	2 cut(s)	134, 2039
XspI	CTAG	3 cut(s)	557, 1205, 2010
Zsp2I	ATGCAT	1 cut(s)	2049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.