Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014286

Physical Location & Seq

Genomic Coordinates Forward (+)

8294300 .. 8298497

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGCTTCCGCGGCGATATTCTCCTCGTTGCGTCGCCGGAGGTCGCCGTCCCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTGGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAAGCTGTTCTATTTCCAGAGGCGGAACTCGAGGTCGTTGGTCCGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCGCCGGGTCAACGCTGCCGTGTACGGCGGTGGTTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATCCTCCTCGATTACTGCGCCCAGTCCAGCAAGCTCTGGCTCTTGCTCCAGCACCATCCGATTTCCGGCCATTTCCACGACTTGAACCAGGAAATCTCGACGCTTCTGGACGTTTTCCCGATCGACGAGGTTGAGTTGGGGGAGGACGTGAGGGAGCAGATTGAGCTCCTGCAGAGGCAGGCCAGGAGGGCGAGGCTGTTGATCGACGAAGCCGACGAGGAGCTGAGGATTCGGTTGTTTGGTTTCCTTGATGAATTCGACAAGGGAAGGGTGCCGAATTCGGATGACGTGTGGGTGTTCTTCGATCAGGGACTGGGGATTAGGGATGCCAAGAGCTGCAGACATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCCACGGTGTCTGTGCTTAATGGCTTTGTGGCGTTTACAAGGTATTGCAGGTTCTTGCTCTTCGGATTCGAGGAGGATGAGGTGGGAGTGGGAGTTGGGGGTCAGAGGAAGCCGAGGAAGGGTTTGATTAGTCAGCAGATTGCTGAGACTTTTATTACGATTCCCAAGGATTTCTCCTGCCCGATTAGTTTGGATTTGATGAGAGAGCCTGTGATAATCTCGACTGGGCAGACGTATGACCGGATTTCGATTTCCAGGTGGCTGGAAGAGGGGCATTGTACTTGTCCCAAAACAGGTCAAATGCTGCCGCATACCAGGCTTGTTCCCAATCGGGCGTTGAGGAATTTGATCTTGCAGTGGTGCACTGCTTATGGAGTTGCTTATGATTCTCCCGATCAGTGTACTGAAGCATCAGCAGAGAGCTTTGCAGGGGCTTCTCCCTCTAAGGCTGCACTTGCAGCCAACAGAGCTACGGCCGGGCTTTTGATCAAACGGCTAGCGGAGGATGGATCCACATGTGCGCAGACTATAGCTGCTCGGGAGATTCGGTTGTTGGCCAAGACTGGAAGGGAGAACCGTGCTTTCATTGCCGAAGCTGGGGCGATTCCCCATCTTCGGAAGCTGCTCTCCTCTCCAAACTCGGTTGCACAAGAGAACTCTGTGACGGCAATGCTTAACCTGTCGATTTATGACAAAAACAAAAGCAGGATTATGGATGAAGAAGGGTGTTTGGGATCGATTGTCGATGTGCTGAGGTTTGGGCACACAACAGAAGCAAGGGAGAATGCCGCGGCAACGTTGTTTAGTCTGTCGGCAGTACATGACTACAAGAAGAGAATAGCGGATGAGGAAGGGGGAATTGAAGCCTTGGCAGGGCTGTTGTTACATGGCACCCAAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTTAACTTGTCCACGCACACAGAAAATTGCACGAGAATGGTTGAGGCTGGGGCTGTAACAGCACTGGTAAGCGCATTGGGAATTGAAGGAGTTGCTGAGGAATCAGCAGGTGCATTGGCCTTGATTGTTAGGCAGCCAAGTGGAGCTACAGCAGTAGGAAAAGAGGAAATGGCAGTGGCTGGTTTAATAGGGATGATGCGTTGCGGGACTCCAAGGGGTAAAGAAAATGCAGTTGCGGCTTTGCTTGAGTTGTGTCGGCATGGTGGAGCTGCTGCAACTGAGAGAGTTGTCAAGGCACCATCTTTGGCTGGTTTGCTTCAGACGCTGCTTTTCACCGGTACAAAGAGGGCAAGAAGAAAGGCGGCGTCTCTTGCTAGAGTGTTTCAAAGGTGTGAGAATGCATCGACAATGCATTATGGTGGTCTCGGAGTAGGATACGCATTTGCAGGCAACTCGGCTGTAAATCGTGATACAAGTTTCGTTGGTGATGTCTCAGTGCAAATGTCCATTTCGGTGCCTGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

719

Amino Acids

78.43

Weight (kDa)

6.17

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	56 - 167	3.9e-14	PUB10-like, N-terminal domain
U-box	PF04564	289 - 356	4.9e-18	U-box domain
ARM_ARMC5	PF24768	388 - 570	1.5e-08	ARMC5
ARM_PUB	PF25598	398 - 674	4.9e-18	Plant U-box protein ARM repeat region
Arm	PF00514	426 - 463	1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29340
fragaria_vesca	FvH4_3g07220
malus_domestica	MD00G1008100.v1.1 MD10G1274600.v1.1
prunus_persica	Prupe.4G067800_v2.0.a1
pyrus_communis	pycom05g27330 pycom10g22910
rosa_chinensis	RchiOBHm_Chr5g0011931
rosa_laevigata	RLG00000031870
rosa_multiflora	Rmu_ssc0000228.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064660
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091600 Rh5BG087400 Rh5CG101300 Rh5DG088000
rosa_wichuraiana	Rw5G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1730
Acc16I	TGCGCA	1 cut(s)	1227
Acc36I	ACCTGC	2 cut(s)	744, 1730
AccB1I	GGYRCC	4 cut(s)	580, 1595, 1927, 2146
AccII	CGCG	2 cut(s)	11, 1496
AccIII	TCCGGA	1 cut(s)	189
AclI	AACGTT	1 cut(s)	1502
AclWI	GGATC	5 cut(s)	297, 304, 1209, 1222, 1447
AcoI	YGGCCR	3 cut(s)	376, 1179, 1260
AcsI	RAATTY	3 cut(s)	563, 586, 1048
AcuI	CTGAAG	2 cut(s)	1131, 1934
AcyI	GRCGYC	1 cut(s)	1997
AfaI	GTAC	7 cut(s)	99, 259, 299, 985, 1108, 1524, 1972
AfiI	CCNNNNNNNGG	6 cut(s)	374, 824, 998, 1302, 1320, 1578
AflIII	ACRYGT	2 cut(s)	597, 1220
AgeI	ACCGGT	1 cut(s)	1967
AgsI	TTSAA	5 cut(s)	229, 394, 1568, 1718, 2018
AjiI	CACGTC	3 cut(s)	88, 457, 598
AjnI	CCWGG	5 cut(s)	51, 396, 491, 959, 1019
Alw21I	GWGCWC	2 cut(s)	477, 1070
Alw26I	GTCTC	4 cut(s)	845, 2004, 2060, 2128
Alw44I	GTGCAC	1 cut(s)	1066
AlwI	GGATC	5 cut(s)	297, 304, 1209, 1222, 1447
AlwNI	CAGNNNCTG	4 cut(s)	106, 622, 1811, 1957
Ama87I	CYCGRG	2 cut(s)	175, 1242
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	6 cut(s)	57, 376, 489, 1179, 1260, 1749
ApaLI	GTGCAC	1 cut(s)	1066
ApoI	RAATTY	3 cut(s)	563, 586, 1048
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsiGI	ACCGGT	1 cut(s)	1967
AspLEI	GCGC	4 cut(s)	94, 329, 1228, 1706
AspS9I	GGNCC	2 cut(s)	76, 187
AsuC2I	CCSGG	2 cut(s)	241, 1183
AsuHPI	GGTGA	2 cut(s)	1957, 2129
AsuNHI	GCTAGC	1 cut(s)	1201
AvaI	CYCGRG	2 cut(s)	175, 1242
AvaII	GGWCC	2 cut(s)	76, 187
BaeGI	GKGCMC	2 cut(s)	1070, 1470
BalI	TGGCCA	1 cut(s)	1262
BamHI	GGATCC	1 cut(s)	1214
BanI	GGYRCC	4 cut(s)	580, 1595, 1927, 2146
BanII	GRGCYC	2 cut(s)	477, 708
BauI	CACGAG	3 cut(s)	209, 689, 1663
Bbv12I	GWGCWC	2 cut(s)	477, 1070
BbvCI	CCTCAGC	3 cut(s)	533, 1457, 1728
BccI	CCATC	4 cut(s)	372, 1205, 1323, 1939
BceAI	ACGGC	7 cut(s)	31, 135, 238, 276, 1194, 1214, 1386
BcgI	CGANNNNNNTGC	2 cut(s)	2067, 2101
BciT130I	CCWGG	5 cut(s)	53, 398, 493, 961, 1021
BciVI	GTATCC	1 cut(s)	2060
BclI	TGATCA	1 cut(s)	1191
BcnI	CCSGG	2 cut(s)	241, 1183
BcoDI	GTCTC	4 cut(s)	845, 2004, 2060, 2128
BfaI	CTAG	2 cut(s)	1202, 2007
BfmI	CTRYAG	4 cut(s)	479, 646, 1233, 1779
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	2 cut(s)	744, 1730
BfuI	GTATCC	1 cut(s)	2060
BglI	GCCNNNNNGGC	1 cut(s)	497
Bme1390I	CCNGG	7 cut(s)	53, 241, 398, 493, 961, 1021, 1183
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	2 cut(s)	175, 1242
BmgBI	CACGTC	3 cut(s)	88, 457, 598
BmgT120I	GGNCC	2 cut(s)	76, 187
BmiI	GGNNCC	5 cut(s)	582, 1216, 1597, 1929, 2148
BmrFI	CCNGG	7 cut(s)	53, 241, 398, 493, 961, 1021, 1183
BmrI	ACTGGG	3 cut(s)	325, 632, 939
BmsI	GCATC	5 cut(s)	625, 1124, 1606, 1818, 2042
BmtI	GCTAGC	1 cut(s)	1205
BmuI	ACTGGG	3 cut(s)	325, 632, 939
BpmI	CTGGAG	2 cut(s)	74, 341
Bpu10I	CCTNAGC	3 cut(s)	533, 1457, 1728
BpuEI	CTTGAG	2 cut(s)	260, 1898
BpuMI	CCSGG	2 cut(s)	241, 1183
Bsa29I	ATCGAT	1 cut(s)	1442
BsaHI	GRCGYC	1 cut(s)	1997
BsaI	GGTCTC	1 cut(s)	2060
BsaJI	CCNNGG	8 cut(s)	9, 51, 708, 818, 870, 1494, 1572, 1844
BsaWI	WCCGGW	4 cut(s)	70, 189, 945, 1967
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 783, 813, 1238, 1268
Bsc4I	CCNNNNNNNGG	6 cut(s)	374, 824, 998, 1302, 1320, 1578
Bse118I	RCCGGY	1 cut(s)	1967
Bse1I	ACTGG	5 cut(s)	331, 627, 934, 1273, 1701
Bse3DI	GCAATG	2 cut(s)	1290, 1380
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	5 cut(s)	53, 398, 493, 961, 1021
BseCI	ATCGAT	1 cut(s)	1442
BseDI	CCNNGG	8 cut(s)	9, 51, 708, 818, 870, 1494, 1572, 1844
BseLI	CCNNNNNNNGG	6 cut(s)	374, 824, 998, 1302, 1320, 1578
BseMI	GCAATG	2 cut(s)	1290, 1380
BseMII	CTCAG	6 cut(s)	524, 840, 1448, 1719, 1902, 2139
BseNI	ACTGG	5 cut(s)	331, 627, 934, 1273, 1701
BseRI	GAGGAG	5 cut(s)	13, 305, 542, 791, 1324
BseSI	GKGCMC	2 cut(s)	1070, 1470
BseX3I	CGGCCG	1 cut(s)	1179
BseYI	CCCAGC	2 cut(s)	1301, 1679
BsgI	GTGCAG	1 cut(s)	1140
Bsh1236I	CGCG	2 cut(s)	11, 1496
Bsh1285I	CGRYCG	2 cut(s)	432, 1182
BshFI	GGCC	6 cut(s)	59, 378, 491, 1181, 1262, 1751
BshNI	GGYRCC	4 cut(s)	580, 1595, 1927, 2146
BshTI	ACCGGT	1 cut(s)	1967
BshVI	ATCGAT	1 cut(s)	1442
BsiEI	CGRYCG	2 cut(s)	432, 1182
BsiHKAI	GWGCWC	2 cut(s)	477, 1070
BsiHKCI	CYCGRG	2 cut(s)	175, 1242
BsiSI	CCGG	8 cut(s)	37, 71, 190, 240, 375, 946, 1182, 1968
BslFI	GGGAC	4 cut(s)	34, 633, 975, 1852
BslI	CCNNNNNNNGG	6 cut(s)	374, 824, 998, 1302, 1320, 1578
BsmAI	GTCTC	4 cut(s)	845, 2004, 2060, 2128
BsmBI	CGTCTC	1 cut(s)	2004
BsmFI	GGGAC	4 cut(s)	34, 633, 975, 1852
BsmI	GAATGC	2 cut(s)	1495, 2035
BsnI	GGCC	6 cut(s)	59, 378, 491, 1181, 1262, 1751
Bso31I	GGTCTC	1 cut(s)	2060
BsoBI	CYCGRG	2 cut(s)	175, 1242
Bsp1286I	GDGCHC	4 cut(s)	477, 708, 1070, 1470
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 297
BspANI	GGCC	6 cut(s)	59, 378, 491, 1181, 1262, 1751
BspCNI	CTCAG	6 cut(s)	525, 841, 1449, 1720, 1903, 2138
BspDI	ATCGAT	1 cut(s)	1442
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	11, 1496
BspLI	GGNNCC	5 cut(s)	582, 1216, 1597, 1929, 2148
BspMAI	CTGCAG	2 cut(s)	483, 650
BspMI	ACCTGC	2 cut(s)	744, 1730
BspOI	GCTAGC	1 cut(s)	1205
BspPI	GGATC	5 cut(s)	297, 304, 1209, 1222, 1447
BspQI	GCTCTTC	2 cut(s)	666, 770
BspT107I	GGYRCC	4 cut(s)	580, 1595, 1927, 2146
BspTNI	GGTCTC	1 cut(s)	2060
BsrDI	GCAATG	2 cut(s)	1290, 1380
BsrFI	RCCGGY	1 cut(s)	1967
BsrGI	TGTACA	2 cut(s)	97, 297
BsrI	ACTGG	5 cut(s)	331, 627, 934, 1273, 1701
BssAI	RCCGGY	1 cut(s)	1967
BssECI	CCNNGG	8 cut(s)	9, 51, 708, 818, 870, 1494, 1572, 1844
BssNI	GRCGYC	1 cut(s)	1997
BssSI	CACGAG	3 cut(s)	209, 689, 1663
BssT1I	CCWWGG	3 cut(s)	870, 1572, 1844
Bst2BI	CACGAG	3 cut(s)	209, 689, 1663
Bst2UI	CCWGG	5 cut(s)	53, 398, 493, 961, 1021
Bst4CI	ACNGT	2 cut(s)	712, 1283
Bst6I	CTCTTC	4 cut(s)	666, 770, 966, 1532
BstACI	GRCGYC	1 cut(s)	1997
BstAUI	TGTACA	2 cut(s)	97, 297
BstC8I	GCNNGC	4 cut(s)	341, 489, 1203, 2080
BstDEI	CTNAG	7 cut(s)	533, 849, 1149, 1457, 1728, 1911, 2125
BstDSI	CCRYGG	3 cut(s)	9, 708, 1494
BstFNI	CGCG	2 cut(s)	11, 1496
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	4 cut(s)	94, 329, 1228, 1706
BstMAI	GTCTC	4 cut(s)	845, 2004, 2060, 2128
BstMCI	CGRYCG	2 cut(s)	432, 1182
BstNI	CCWGG	5 cut(s)	53, 398, 493, 961, 1021
BstNSI	RCATGY	1 cut(s)	1224
BstSCI	CCNGG	7 cut(s)	51, 239, 396, 491, 959, 1019, 1181
BstSFI	CTRYAG	4 cut(s)	479, 646, 1233, 1779
BstSLI	GKGCMC	2 cut(s)	1070, 1470
BstUI	CGCG	2 cut(s)	11, 1496
BstX2I	RGATCY	3 cut(s)	302, 309, 1214
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	3 cut(s)	302, 309, 1214
BstZI	CGGCCG	1 cut(s)	1179
Bsu15I	ATCGAT	1 cut(s)	1442
BsuI	GTATCC	1 cut(s)	2060
BsuRI	GGCC	6 cut(s)	59, 378, 491, 1181, 1262, 1751
BsuTUI	ATCGAT	1 cut(s)	1442
BtgI	CCRYGG	3 cut(s)	9, 708, 1494
BtrI	CACGTC	3 cut(s)	88, 457, 598
BtsI	GCAGTG	3 cut(s)	1067, 1068, 1812
BtsIMutI	CAGTG	6 cut(s)	1067, 1068, 1109, 1694, 1812, 2133
BveI	ACCTGC	2 cut(s)	744, 1730
Cac8I	GCNNGC	4 cut(s)	341, 489, 1203, 2080
CaiI	CAGNNNCTG	4 cut(s)	106, 622, 1811, 1957
CfoI	GCGC	4 cut(s)	94, 329, 1228, 1706
Cfr10I	RCCGGY	1 cut(s)	1967
Cfr13I	GGNCC	2 cut(s)	76, 187
Cfr42I	CCGCGG	2 cut(s)	12, 1497
ClaI	ATCGAT	1 cut(s)	1442
CseI	GACGC	4 cut(s)	20, 418, 1963, 1986
Csp6I	GTAC	7 cut(s)	98, 258, 298, 984, 1107, 1523, 1971
CspAI	ACCGGT	1 cut(s)	1967
CviAII	CATG	5 cut(s)	653, 1221, 1526, 1592, 1892
CviQI	GTAC	7 cut(s)	98, 258, 298, 984, 1107, 1523, 1971
DdeI	CTNAG	7 cut(s)	533, 849, 1149, 1457, 1728, 1911, 2125
EaeI	YGGCCR	3 cut(s)	376, 1179, 1260
EagI	CGGCCG	1 cut(s)	1179
Eam1104I	CTCTTC	4 cut(s)	666, 770, 966, 1532
EarI	CTCTTC	4 cut(s)	666, 770, 966, 1532
EciI	GGCGGA	3 cut(s)	137, 184, 226
Ecl136II	GAGCTC	1 cut(s)	475
EclXI	CGGCCG	1 cut(s)	1179
Eco130I	CCWWGG	3 cut(s)	870, 1572, 1844
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	2 cut(s)	477, 708
Eco31I	GGTCTC	1 cut(s)	2060
Eco47I	GGWCC	2 cut(s)	76, 187
Eco52I	CGGCCG	1 cut(s)	1179
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	1131, 1934
Eco88I	CYCGRG	2 cut(s)	175, 1242
EcoICRI	GAGCTC	1 cut(s)	475
EcoRI	GAATTC	2 cut(s)	563, 586
EcoRII	CCWGG	5 cut(s)	51, 396, 491, 959, 1019
EcoT14I	CCWWGG	3 cut(s)	870, 1572, 1844
EcoT22I	ATGCAT	2 cut(s)	2035, 2046
EcoT38I	GRGCYC	2 cut(s)	477, 708
ErhI	CCWWGG	3 cut(s)	870, 1572, 1844
Esp3I	CGTCTC	1 cut(s)	2004
FaeI	CATG	5 cut(s)	656, 1224, 1529, 1595, 1895
FaqI	GGGAC	4 cut(s)	34, 633, 975, 1852
FatI	CATG	5 cut(s)	652, 1220, 1525, 1591, 1891
FauI	CCCGC	1 cut(s)	1829
FbaI	TGATCA	1 cut(s)	1191
FriOI	GRGCYC	2 cut(s)	477, 708
FspBI	CTAG	2 cut(s)	1202, 2007
FspI	TGCGCA	1 cut(s)	1227
GlaI	GCGC	4 cut(s)	93, 328, 1227, 1705
GsaI	CCCAGC	2 cut(s)	1305, 1683
GsuI	CTGGAG	2 cut(s)	74, 341
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	6 cut(s)	59, 378, 491, 1181, 1262, 1751
HapII	CCGG	8 cut(s)	37, 71, 190, 240, 375, 946, 1182, 1968
HgaI	GACGC	4 cut(s)	20, 418, 1963, 1986
HhaI	GCGC	4 cut(s)	94, 329, 1228, 1706
Hin1I	GRCGYC	1 cut(s)	1997
Hin1II	CATG	5 cut(s)	656, 1224, 1529, 1595, 1895
Hin6I	GCGC	4 cut(s)	92, 327, 1226, 1704
HinP1I	GCGC	4 cut(s)	92, 327, 1226, 1704
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HpaII	CCGG	8 cut(s)	37, 71, 190, 240, 375, 946, 1182, 1968
HphI	GGTGA	2 cut(s)	1957, 2129
Hpy166II	GTNNAC	7 cut(s)	76, 246, 258, 741, 1068, 1107, 1644
Hpy188I	TCNGA	9 cut(s)	85, 145, 369, 592, 770, 810, 1323, 1953, 2060
Hpy8I	GTNNAC	7 cut(s)	76, 246, 258, 741, 1068, 1107, 1644
Hpy99I	CGWCG	7 cut(s)	36, 89, 139, 412, 437, 518, 527
HpyAV	CCTTC	7 cut(s)	570, 817, 1266, 1421, 1550, 1606, 1712
HpyCH4III	ACNGT	2 cut(s)	712, 1283
HpyCH4IV	ACGT	6 cut(s)	87, 420, 456, 597, 938, 1502
HpyF3I	CTNAG	7 cut(s)	533, 849, 1149, 1457, 1728, 1911, 2125
HpySE526I	ACGT	6 cut(s)	87, 420, 456, 597, 938, 1502
Hsp92I	GRCGYC	1 cut(s)	1997
Hsp92II	CATG	5 cut(s)	656, 1224, 1529, 1595, 1895
HspAI	GCGC	4 cut(s)	92, 327, 1226, 1704
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	1191
KspI	CCGCGG	2 cut(s)	12, 1497
LguI	GCTCTTC	2 cut(s)	666, 770
LmnI	GCTCC	8 cut(s)	73, 280, 360, 463, 480, 529, 1775, 1898
LweI	GCATC	5 cut(s)	625, 1124, 1606, 1818, 2042
MaeI	CTAG	2 cut(s)	1202, 2007
MaeII	ACGT	6 cut(s)	87, 420, 456, 597, 938, 1502
MaeIII	GTNAC	5 cut(s)	115, 1366, 1587, 1621, 1687
MboII	GAAGA	8 cut(s)	601, 683, 757, 983, 1310, 1436, 1549, 1998
MflI	RGATCY	3 cut(s)	302, 309, 1214
MhlI	GDGCHC	4 cut(s)	477, 708, 1070, 1470
MlsI	TGGCCA	1 cut(s)	1262
MluCI	AATT	6 cut(s)	563, 586, 1048, 1563, 1657, 1713
MluNI	TGGCCA	1 cut(s)	1262
MlyI	GAGTC	4 cut(s)	97, 227, 230, 1834
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	1262
Mph1103I	ATGCAT	2 cut(s)	2035, 2046
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	1262
MseI	TTAA	4 cut(s)	723, 1380, 1635, 1817
MslI	CAYNNNNRTG	3 cut(s)	1667, 2049, 2144
Msp20I	TGGCCA	1 cut(s)	1262
MspA1I	CMGCKG	2 cut(s)	11, 1496
MspI	CCGG	8 cut(s)	37, 71, 190, 240, 375, 946, 1182, 1968
MspR9I	CCNGG	7 cut(s)	53, 241, 398, 493, 961, 1021, 1183
Mva1269I	GAATGC	2 cut(s)	1495, 2035
MvaI	CCWGG	5 cut(s)	53, 398, 493, 961, 1021
MvnI	CGCG	2 cut(s)	11, 1496
NciI	CCSGG	2 cut(s)	241, 1183
NheI	GCTAGC	1 cut(s)	1201
NlaIII	CATG	5 cut(s)	656, 1224, 1529, 1595, 1895
NlaIV	GGNNCC	5 cut(s)	582, 1216, 1597, 1929, 2148
NmeAIII	GCCGAG	2 cut(s)	843, 2066
NmuCI	GTSAC	3 cut(s)	115, 1366, 1621
NsbI	TGCGCA	1 cut(s)	1227
NsiI	ATGCAT	2 cut(s)	2035, 2046
NspI	RCATGY	1 cut(s)	1224
PaeR7I	CTCGAG	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	1730
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	1220
PciSI	GCTCTTC	2 cut(s)	666, 770
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 522
PctI	GAATGC	2 cut(s)	1495, 2035
PfeI	GAWTC	8 cut(s)	538, 685, 771, 865, 1091, 1249, 1309, 1733
PinAI	ACCGGT	1 cut(s)	1967
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	4 cut(s)	97, 227, 229, 1834
PpsI	GAGTC	4 cut(s)	97, 227, 229, 1834
PscI	ACATGT	1 cut(s)	1220
Psp124BI	GAGCTC	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	1502
Psp6I	CCWGG	5 cut(s)	51, 396, 491, 959, 1019
PspFI	CCCAGC	2 cut(s)	1301, 1679
PspGI	CCWGG	5 cut(s)	51, 396, 491, 959, 1019
PspN4I	GGNNCC	5 cut(s)	582, 1216, 1597, 1929, 2148
PspPI	GGNCC	2 cut(s)	76, 187
PspXI	VCTCGAGB	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PstI	CTGCAG	2 cut(s)	483, 650
PstNI	CAGNNNCTG	4 cut(s)	106, 622, 1811, 1957
PsuI	RGATCY	3 cut(s)	302, 309, 1214
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	7 cut(s)	99, 259, 299, 985, 1108, 1524, 1972
RsaNI	GTAC	7 cut(s)	98, 258, 298, 984, 1107, 1523, 1971
RseI	CAYNNNNRTG	3 cut(s)	1667, 2049, 2144
SacI	GAGCTC	1 cut(s)	477
SacII	CCGCGG	2 cut(s)	12, 1497
SapI	GCTCTTC	2 cut(s)	666, 770
SaqAI	TTAA	4 cut(s)	723, 1380, 1635, 1817
Sau96I	GGNCC	2 cut(s)	76, 187
SchI	GAGTC	4 cut(s)	97, 227, 230, 1834
ScrFI	CCNGG	7 cut(s)	53, 241, 398, 493, 961, 1021, 1183
SduI	GDGCHC	4 cut(s)	477, 708, 1070, 1470
SfaNI	GCATC	5 cut(s)	625, 1124, 1606, 1818, 2042
SfcI	CTRYAG	4 cut(s)	479, 646, 1233, 1779
Sfr274I	CTCGAG	1 cut(s)	175
Sfr303I	CCGCGG	2 cut(s)	12, 1497
SgrBI	CCGCGG	2 cut(s)	12, 1497
SinI	GGWCC	2 cut(s)	76, 187
SlaI	CTCGAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	3 cut(s)	1667, 2049, 2144
SmlI	CTYRAG	3 cut(s)	175, 275, 1877
SmoI	CTYRAG	3 cut(s)	175, 275, 1877
Sse9I	AATT	6 cut(s)	563, 586, 1048, 1563, 1657, 1713
SseBI	AGGCCT	1 cut(s)	59
SspMI	CTAG	2 cut(s)	1202, 2007
SstI	GAGCTC	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	7 cut(s)	51, 239, 396, 491, 959, 1019, 1181
StyI	CCWWGG	3 cut(s)	870, 1572, 1844
TaaI	ACNGT	2 cut(s)	712, 1283
TaiI	ACGT	6 cut(s)	90, 423, 459, 600, 941, 1505
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	6 cut(s)	563, 586, 1048, 1563, 1657, 1713
TatI	WGTACW	5 cut(s)	97, 297, 983, 1106, 1522
TauI	GCSGC	6 cut(s)	14, 1015, 1496, 1499, 1871, 1997
TfiI	GAWTC	8 cut(s)	538, 685, 771, 865, 1091, 1249, 1309, 1733
Tru1I	TTAA	4 cut(s)	723, 1380, 1635, 1817
Tru9I	TTAA	4 cut(s)	723, 1380, 1635, 1817
TscAI	CASTG	6 cut(s)	1067, 1075, 1109, 1701, 1812, 2133
TseFI	GTSAC	3 cut(s)	115, 1366, 1621
Tsp45I	GTSAC	3 cut(s)	115, 1366, 1621
TspDTI	ATGAA	3 cut(s)	576, 1279, 1437
TspRI	CASTG	6 cut(s)	1067, 1075, 1109, 1701, 1812, 2133
VneI	GTGCAC	1 cut(s)	1066
VpaK11BI	GGWCC	2 cut(s)	76, 187
XapI	RAATTY	3 cut(s)	563, 586, 1048
XceI	RCATGY	1 cut(s)	1224
XhoI	CTCGAG	1 cut(s)	175
XspI	CTAG	2 cut(s)	1202, 2007
Zsp2I	ATGCAT	2 cut(s)	2035, 2046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.