Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

28329248 .. 28329804

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTTCGGCGGCGATATTCTCATCGATGCGGAGGCGGAGGTCACCTTCTCTGGAGGCATTTTTAGCTCCGGTTGACCTTTCCGACGTCGCCCTTGTACAAACCCTTGTCTCCGTCGCTGCCGACATAGTTTCCTCCTTCTCAGACAAGTTCTTATCCATCCAGCGGCGGAATTCGAGGTCCCTGGTGCGGAAAGTTGAGATCTTTCTCGTGCTCTTGGAGTATCTGAGGGACTCCGACGCTACCCTGCCGTGTACGGCGGTCATCTGCCTGAAAGAGCTATACTTGCTGTTGTACAGATCCAAAATACTCCTCGATTGCTGCGCCCAATCCAGTAAGTTGTGGCTTTTGCTTCAGAACCATCCAATTTCCGGCCATTTTCACGATATGAATCAGGAAATTTCGACCCTTTTGGATGTTTTTCCGATGGAGGACGTCGGATTGGGGGAGGACGTGAGGGAGCAGATTGAGCTCCTGCAGCTACAGGGTTCAGTTCTTTTTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

170

Amino Acids

19.0

Weight (kDa)

5.34

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	54 - 160	1e-06	MCAfunc domain
PUB10_N	PF25368	56 - 162	1.4e-13	PUB10-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	90, 438
AciI	CCGC	7 cut(s)	11, 31, 37, 166, 169, 190, 260
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	172, 399
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	2 cut(s)	87, 435
AfaI	GTAC	3 cut(s)	99, 256, 296
AfiI	CCNNNNNNNGG	3 cut(s)	165, 189, 371
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	68, 280, 472, 481
AluI	AGCT	4 cut(s)	68, 280, 472, 481
Alw21I	GWGCWC	2 cut(s)	216, 474
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	119, 321, 478
ApoI	RAATTY	2 cut(s)	172, 399
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	216, 474
BbvI	GCAGC	3 cut(s)	106, 308, 490
BccI	CCATC	3 cut(s)	167, 369, 421
BceAI	ACGGC	2 cut(s)	235, 273
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	2 cut(s)	476, 482
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	5 cut(s)	12, 120, 167, 322, 479
BlsI	GCNGC	5 cut(s)	13, 121, 168, 323, 480
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	2 cut(s)	87, 435
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 189, 371
Bse1I	ACTGG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	159, 361, 421
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	165, 189, 371
BseMII	CTCAG	2 cut(s)	156, 218
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	106, 308, 490
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	216, 474
BsiSI	CCGG	2 cut(s)	71, 372
BslFI	GGGAC	2 cut(s)	166, 245
BslI	CCNNNNNNNGG	3 cut(s)	165, 189, 371
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	166, 245
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	216, 474
Bsp1407I	TGTACA	2 cut(s)	97, 294
Bsp143I	GATC	2 cut(s)	201, 299
BspACI	CCGC	7 cut(s)	11, 31, 37, 166, 169, 190, 260
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	155, 219
BspDI	ATCGAT	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	294
BsrGI	TGTACA	2 cut(s)	97, 294
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	201, 299
BssNI	GRCGYC	2 cut(s)	87, 435
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	185
BstACI	GRCGYC	2 cut(s)	87, 435
BstAUI	TGTACA	2 cut(s)	97, 294
BstDEI	CTNAG	2 cut(s)	142, 227
BstEII	GGTNACC	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	159, 361, 421
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	204, 302
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	201, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 65, 286, 469, 478
BstNI	CCWGG	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	2 cut(s)	476, 482
BstV1I	GCAGC	3 cut(s)	106, 308, 490
BstX2I	RGATCY	2 cut(s)	201, 299
BstYI	RGATCY	2 cut(s)	201, 299
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	3 cut(s)	159, 361, 421
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	180
ClaI	ATCGAT	1 cut(s)	26
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	98, 255, 295
CviJI	RGCY	7 cut(s)	5, 68, 280, 346, 375, 472, 481
CviKI_1	RGCY	7 cut(s)	5, 68, 280, 346, 375, 472, 481
CviQI	GTAC	3 cut(s)	98, 255, 295
DdeI	CTNAG	2 cut(s)	142, 227
DpnI	GATC	2 cut(s)	203, 301
DpnII	GATC	2 cut(s)	201, 299
EaeI	YGGCCR	1 cut(s)	373
EciI	GGCGGA	2 cut(s)	52, 184
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	474
FaiI	YATR	3 cut(s)	128, 283, 389
FaqI	GGGAC	2 cut(s)	166, 245
Fnu4HI	GCNGC	5 cut(s)	12, 120, 167, 322, 479
FokI	GGATG	3 cut(s)	146, 348, 428
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	12, 120, 167, 322, 479
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	5 cut(s)	12, 120, 167, 322, 479
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	71, 372
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	2 cut(s)	87, 435
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	233, 391
HpaII	CCGG	2 cut(s)	71, 372
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	76, 255
Hpy188I	TCNGA	7 cut(s)	85, 145, 228, 238, 357, 426, 440
Hpy188III	TCNNGA	4 cut(s)	53, 383, 395, 507
Hpy8I	GTNNAC	2 cut(s)	76, 255
Hpy99I	CGWCG	5 cut(s)	89, 92, 119, 242, 440
HpyAV	CCTTC	2 cut(s)	57, 148
HpyCH4IV	ACGT	3 cut(s)	87, 435, 453
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 65, 286, 469, 478
HpyF3I	CTNAG	2 cut(s)	142, 227
HpySE526I	ACGT	3 cut(s)	87, 435, 453
Hsp92I	GRCGYC	2 cut(s)	87, 435
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	201, 299
LmnI	GCTCC	3 cut(s)	73, 460, 477
Lsp1109I	GCAGC	3 cut(s)	106, 308, 490
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	3 cut(s)	87, 435, 453
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	203, 301
MboI	GATC	2 cut(s)	201, 299
MflI	RGATCY	2 cut(s)	201, 299
MhlI	GDGCHC	2 cut(s)	216, 474
MluCI	AATT	3 cut(s)	172, 366, 399
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	108, 261, 418
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	2 cut(s)	71, 372
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	5 cut(s)	11, 65, 286, 469, 478
NdeII	GATC	2 cut(s)	201, 299
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	13, 121, 168, 323, 480
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	180
PspPPI	RGGWCCY	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	201, 299
RsaI	GTAC	3 cut(s)	99, 256, 296
RsaNI	GTAC	3 cut(s)	98, 255, 295
SacI	GAGCTC	1 cut(s)	474
SatI	GCNGC	5 cut(s)	12, 120, 167, 322, 479
Sau3AI	GATC	2 cut(s)	201, 299
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	216, 474
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	2 cut(s)	476, 482
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	3 cut(s)	172, 366, 399
SsiI	CCGC	7 cut(s)	11, 31, 37, 166, 169, 190, 260
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	183
TaiI	ACGT	3 cut(s)	90, 438, 456
TaqI	TCGA	4 cut(s)	26, 176, 315, 404
TasI	AATT	3 cut(s)	172, 366, 399
TatI	WGTACW	2 cut(s)	97, 294
TauI	GCSGC	2 cut(s)	14, 169
TfiI	GAWTC	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	3 cut(s)	119, 321, 478
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	2 cut(s)	172, 399
ZraI	GACGTC	2 cut(s)	88, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.