Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

27985867 .. 27988287

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG175600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTTCCGCGGCGATATTCTCTTCGTTGCGTCGGCGGAGGTCGCCGTCTCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTCGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAAGTTGTTCTATTTCCAGAGACAGAATTTGAGGTCGCTGGTCCGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCCCCGGGTCAACTCTGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATTCTCCTCGATTACTGTGCCCAGTCCAGTAAGCTCTGGCTTTTACTCCAGCACCATCCGATTTTCGGCCATTTCCACGACTTGAATCAGGAAATCTCGACCCTTCTGGATGTTTTTCCGATCGACGAGGTTGAGTTGGGGGAGGACGTGAGGGAGCAGATTGAGCTTCTGCAGAGACAGGCGAGGAAAGCGAGGCTGTTGATCGACGAAGCCGACGAGGAGTTGAGGATTCAGCTGTTTAGTTTCCTACATGAATTCGAGGAGGGAAGGGTGCAGAATTCGGATGACGTGTGGGTGTTCTTCGATCAGGGATTGGGGATTAGGGATGCCAAGAGCTGCAGACATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCTACAGTAAAGGGCAAGGCTGGATCGTCCACATTAATCTCCAAATATCGCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

254

Amino Acids

29.21

Weight (kDa)

5.03

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	55 - 178	7.6e-06	MCAfunc domain
PUB10_N	PF25368	56 - 167	2.8e-13	PUB10-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	5 cut(s)	9, 11, 37, 122, 263
AclWI	GGATC	2 cut(s)	297, 736
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	172, 563, 586
AfaI	GTAC	2 cut(s)	99, 299
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	229, 394
AjiI	CACGTC	3 cut(s)	88, 457, 598
AluBI	AGCT	6 cut(s)	68, 283, 343, 475, 544, 645
AluI	AGCT	6 cut(s)	68, 283, 343, 475, 544, 645
Alw26I	GTCTC	3 cut(s)	54, 160, 478
AlwI	GGATC	2 cut(s)	297, 736
Ama87I	CYCGRG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	57, 376
ApeKI	GCWGC	2 cut(s)	292, 645
ApoI	RAATTY	3 cut(s)	172, 563, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AseI	ATTAAT	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	76, 187
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	76, 187
BaeGI	GKGCMC	1 cut(s)	331
BauI	CACGAG	2 cut(s)	209, 689
BbvI	GCAGC	2 cut(s)	279, 632
BccI	CCATC	1 cut(s)	372
BceAI	ACGGC	4 cut(s)	31, 135, 238, 276
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	3 cut(s)	54, 160, 478
BfmI	CTRYAG	3 cut(s)	479, 646, 708
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	3 cut(s)	12, 293, 646
BlsI	GCNGC	3 cut(s)	13, 294, 647
Bme1390I	CCNGG	2 cut(s)	240, 241
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	3 cut(s)	88, 457, 598
BmgT120I	GGNCC	2 cut(s)	76, 187
BmrFI	CCNGG	2 cut(s)	240, 241
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	74, 341
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	240, 241
BsaJI	CCNNGG	4 cut(s)	9, 238, 239, 254
BsaWI	WCCGGW	2 cut(s)	70, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	331, 336
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	9, 238, 239, 254
BseGI	GGATG	5 cut(s)	364, 424, 598, 640, 703
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	331, 336
BseRI	GAGGAG	3 cut(s)	305, 542, 584
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	279, 632
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	59, 378
BsiEI	CGRYCG	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	71, 190, 240
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	3 cut(s)	54, 160, 478
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	59, 378
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 297
Bsp143I	GATC	5 cut(s)	302, 429, 510, 613, 728
BspACI	CCGC	5 cut(s)	9, 11, 37, 122, 263
BspANI	GGCC	2 cut(s)	59, 378
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	11
BspMAI	CTGCAG	2 cut(s)	483, 650
BspPI	GGATC	2 cut(s)	297, 736
BspQI	GCTCTTC	1 cut(s)	666
BsrGI	TGTACA	2 cut(s)	97, 297
BsrI	ACTGG	2 cut(s)	331, 336
BssECI	CCNNGG	4 cut(s)	9, 238, 239, 254
BssMI	GATC	5 cut(s)	302, 429, 510, 613, 728
BssSI	CACGAG	2 cut(s)	209, 689
Bst2BI	CACGAG	2 cut(s)	209, 689
Bst4CI	ACNGT	2 cut(s)	326, 712
Bst6I	CTCTTC	2 cut(s)	28, 666
BstAUI	TGTACA	2 cut(s)	97, 297
BstDSI	CCRYGG	2 cut(s)	9, 254
BstF5I	GGATG	5 cut(s)	364, 424, 598, 640, 703
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	5 cut(s)	305, 432, 513, 616, 731
BstMAI	GTCTC	3 cut(s)	54, 160, 478
BstMBI	GATC	5 cut(s)	302, 429, 510, 613, 728
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 43, 65, 289, 472, 497
BstSCI	CCNGG	2 cut(s)	238, 239
BstSFI	CTRYAG	3 cut(s)	479, 646, 708
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	279, 632
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	59, 378
BtgI	CCRYGG	2 cut(s)	9, 254
BtrI	CACGTC	3 cut(s)	88, 457, 598
BtsCI	GGATG	5 cut(s)	364, 424, 598, 640, 703
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	76, 187
Cfr42I	CCGCGG	1 cut(s)	12
Cfr9I	CCCGGG	1 cut(s)	239
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	98, 298
CviAII	CATG	2 cut(s)	560, 653
CviQI	GTAC	2 cut(s)	98, 298
DpnI	GATC	5 cut(s)	304, 431, 512, 615, 730
DpnII	GATC	5 cut(s)	302, 429, 510, 613, 728
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	28, 666
EarI	CTCTTC	2 cut(s)	28, 666
EciI	GGCGGA	2 cut(s)	52, 137
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	76, 187
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	2 cut(s)	563, 586
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	2 cut(s)	563, 656
FaiI	YATR	2 cut(s)	561, 654
FatI	CATG	2 cut(s)	559, 652
Fnu4HI	GCNGC	3 cut(s)	12, 293, 646
FokI	GGATG	5 cut(s)	351, 431, 605, 647, 710
Fsp4HI	GCNGC	3 cut(s)	12, 293, 646
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	12, 293, 646
GsuI	CTGGAG	2 cut(s)	74, 341
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	59, 378
HapII	CCGG	3 cut(s)	71, 190, 240
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	563, 656
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	7 cut(s)	103, 221, 233, 310, 394, 538, 685
HpaII	CCGG	3 cut(s)	71, 190, 240
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	4 cut(s)	76, 246, 258, 735
Hpy188I	TCNGA	5 cut(s)	85, 145, 369, 429, 592
Hpy188III	TCNNGA	7 cut(s)	53, 163, 190, 398, 406, 416, 689
Hpy8I	GTNNAC	4 cut(s)	76, 246, 258, 735
Hpy99I	CGWCG	6 cut(s)	36, 89, 139, 437, 518, 527
HpyAV	CCTTC	2 cut(s)	422, 570
HpyCH4III	ACNGT	2 cut(s)	326, 712
HpyCH4IV	ACGT	3 cut(s)	87, 456, 597
HpyCH4V	TGCA	3 cut(s)	481, 583, 648
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 43, 65, 289, 472, 497
HpySE526I	ACGT	3 cut(s)	87, 456, 597
Hsp92II	CATG	2 cut(s)	563, 656
HspAI	GCGC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	302, 429, 510, 613, 728
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	3 cut(s)	73, 280, 463
Lsp1109I	GCAGC	2 cut(s)	279, 632
LweI	GCATC	1 cut(s)	625
MaeII	ACGT	3 cut(s)	87, 456, 597
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	5 cut(s)	304, 431, 512, 615, 730
MboI	GATC	5 cut(s)	302, 429, 510, 613, 728
MboII	GAAGA	3 cut(s)	15, 601, 683
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	3 cut(s)	172, 563, 586
MlyI	GAGTC	3 cut(s)	97, 227, 230
MmeI	TCCRAC	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	189
MseI	TTAA	2 cut(s)	740, 763
MspA1I	CMGCKG	2 cut(s)	11, 544
MspI	CCGG	3 cut(s)	71, 190, 240
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	6 cut(s)	11, 43, 65, 289, 472, 497
NciI	CCSGG	2 cut(s)	240, 241
NdeII	GATC	5 cut(s)	302, 429, 510, 613, 728
NlaIII	CATG	2 cut(s)	563, 656
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 522
PfeI	GAWTC	4 cut(s)	310, 394, 538, 685
PkrI	GCNGC	3 cut(s)	13, 294, 647
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	3 cut(s)	97, 227, 229
PpsI	GAGTC	3 cut(s)	97, 227, 229
PshBI	ATTAAT	1 cut(s)	740
PspPI	GGNCC	2 cut(s)	76, 187
PstI	CTGCAG	2 cut(s)	483, 650
PsuI	RGATCY	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	99, 299
RsaNI	GTAC	2 cut(s)	98, 298
SacII	CCGCGG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	740, 763
SatI	GCNGC	3 cut(s)	12, 293, 646
Sau3AI	GATC	5 cut(s)	302, 429, 510, 613, 728
Sau96I	GGNCC	2 cut(s)	76, 187
SchI	GAGTC	3 cut(s)	97, 227, 230
ScrFI	CCNGG	2 cut(s)	240, 241
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	3 cut(s)	479, 646, 708
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	76, 187
SmaI	CCCGGG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	172, 563, 586
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	9, 11, 37, 122, 263
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	238, 239
TaaI	ACNGT	2 cut(s)	326, 712
TaiI	ACGT	3 cut(s)	90, 459, 600
TaqI	TCGA	7 cut(s)	198, 318, 407, 432, 513, 567, 612
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	172, 563, 586
TatI	WGTACW	2 cut(s)	97, 297
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	4 cut(s)	310, 394, 538, 685
Tru1I	TTAA	2 cut(s)	740, 763
Tru9I	TTAA	2 cut(s)	740, 763
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	292, 645
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	576
TspMI	CCCGGG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	76, 187
VspI	ATTAAT	1 cut(s)	740
XapI	RAATTY	3 cut(s)	172, 563, 586
XmaI	CCCGGG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.