Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

8258933 .. 8262734

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCAGAGTGGGTTCTCTGTGGCTATCATGGGCGCCGCGAGAGGTTTCCTAGTCTGGAGGGTTGATTGTCTCTGCGGCGAGGAGGCGGCGACCTGTGAGATCCAGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTCGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAAGTTGTTCTATTTCCAGAGATGGAATTCGAGGTCGCTGGTCCGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCCCCGGGTCAACTCCGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATTCTCCTCGATTACTGCGCCCAGTCCAGTAAGCTCTGGGTTTTGCTCCAGCGCCATCCAATTTCCGGCCATTTCCACGATTTGAATCAGGAAATCTCGACCCTTCTGGATGTTTTTCCGATCAACGAGGTTGAGTTGGGGGAGGAGGTGAGGGAGCAGATTGAGCTTCTGCAGAGACAGGCGAGGAGGGCGAGGTTGTTGATCGACGAAGCCGACAAGGAGTTGAGGATTCAGCTGTTTAGTTTCCTACATGAATTCGAGGAGGGAAGGGTGCCGAATTCGGATGACGTGTGGGTGTTCTTCGATCAGGGATTGGGGATTAGGGAAGCCAAGAGCTGCAGACATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCTACAATGTCTGTGCCCGGAAGAAGGAAGAAGAAACAGATAAAAACGAAGGAAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

273

Amino Acids

31.25

Weight (kDa)

5.23

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	77 - 184	1e-14	PUB10-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 631
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	6 cut(s)	36, 75, 86, 173, 302, 314
AclWI	GGATC	2 cut(s)	94, 348
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	3 cut(s)	223, 614, 637
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	150, 350
AfiI	CCNNNNNNNGG	2 cut(s)	425, 780
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	2 cut(s)	280, 445
AjiI	CACGTC	2 cut(s)	139, 649
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	6 cut(s)	119, 334, 394, 526, 595, 696
AluI	AGCT	6 cut(s)	119, 334, 394, 526, 595, 696
Alw26I	GTCTC	2 cut(s)	74, 529
AlwI	GGATC	2 cut(s)	94, 348
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	2 cut(s)	108, 427
ApeKI	GCWGC	2 cut(s)	343, 696
ApoI	RAATTY	3 cut(s)	223, 614, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspLEI	GCGC	4 cut(s)	35, 145, 380, 414
AspS9I	GGNCC	2 cut(s)	127, 238
AsuC2I	CCSGG	3 cut(s)	291, 292, 774
AsuHPI	GGTGA	2 cut(s)	328, 520
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	127, 238
BaeGI	GKGCMC	1 cut(s)	774
BanI	GGYRCC	2 cut(s)	32, 631
BauI	CACGAG	2 cut(s)	260, 740
BbvI	GCAGC	2 cut(s)	330, 683
BccI	CCATC	2 cut(s)	213, 423
BceAI	ACGGC	3 cut(s)	186, 289, 327
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	3 cut(s)	291, 292, 774
BcoDI	GTCTC	2 cut(s)	74, 529
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	2 cut(s)	530, 697
BfoI	RGCGCY	3 cut(s)	36, 146, 415
BisI	GCNGC	5 cut(s)	36, 76, 87, 344, 697
BlsI	GCNGC	5 cut(s)	37, 77, 88, 345, 698
Bme1390I	CCNGG	4 cut(s)	104, 291, 292, 774
Bme18I	GGWCC	2 cut(s)	127, 238
BmeT110I	CYCGRG	1 cut(s)	290
BmgBI	CACGTC	2 cut(s)	139, 649
BmgT120I	GGNCC	2 cut(s)	127, 238
BmiI	GGNNCC	2 cut(s)	34, 633
BmrFI	CCNGG	4 cut(s)	104, 291, 292, 774
BmrI	ACTGGG	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	2 cut(s)	76, 392
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	3 cut(s)	291, 292, 774
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	289, 290, 305
BsaWI	WCCGGW	2 cut(s)	121, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 780
Bse1I	ACTGG	2 cut(s)	382, 387
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	289, 290, 305
BseGI	GGATG	4 cut(s)	415, 475, 649, 754
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	425, 780
BseNI	ACTGG	2 cut(s)	382, 387
BseRI	GAGGAG	5 cut(s)	95, 356, 518, 559, 635
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	2 cut(s)	330, 683
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	110, 429
BshNI	GGYRCC	2 cut(s)	32, 631
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	122, 241, 291, 426, 774
BslI	CCNNNNNNNGG	2 cut(s)	425, 780
BsmAI	GTCTC	2 cut(s)	74, 529
BsnI	GGCC	2 cut(s)	110, 429
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	2 cut(s)	148, 348
Bsp143I	GATC	5 cut(s)	99, 353, 480, 561, 664
BspACI	CCGC	6 cut(s)	36, 75, 86, 173, 302, 314
BspANI	GGCC	2 cut(s)	110, 429
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	34, 633
BspMAI	CTGCAG	2 cut(s)	534, 701
BspPI	GGATC	2 cut(s)	94, 348
BspQI	GCTCTTC	1 cut(s)	717
BspT107I	GGYRCC	2 cut(s)	32, 631
BsrGI	TGTACA	2 cut(s)	148, 348
BsrI	ACTGG	2 cut(s)	382, 387
BssECI	CCNNGG	3 cut(s)	289, 290, 305
BssMI	GATC	5 cut(s)	99, 353, 480, 561, 664
BssNI	GRCGYC	1 cut(s)	33
BssSI	CACGAG	2 cut(s)	260, 740
Bst2BI	CACGAG	2 cut(s)	260, 740
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	1 cut(s)	33
BstAUI	TGTACA	2 cut(s)	148, 348
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	415, 475, 649, 754
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	3 cut(s)	36, 146, 415
BstHHI	GCGC	4 cut(s)	35, 145, 380, 414
BstKTI	GATC	5 cut(s)	102, 356, 483, 564, 667
BstMAI	GTCTC	2 cut(s)	74, 529
BstMBI	GATC	5 cut(s)	99, 353, 480, 561, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 340, 523, 548
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	4 cut(s)	102, 289, 290, 772
BstSFI	CTRYAG	2 cut(s)	530, 697
BstSLI	GKGCMC	1 cut(s)	774
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	330, 683
BstX2I	RGATCY	2 cut(s)	99, 353
BstYI	RGATCY	2 cut(s)	99, 353
BsuRI	GGCC	2 cut(s)	110, 429
BtgI	CCRYGG	1 cut(s)	305
BtrI	CACGTC	2 cut(s)	139, 649
BtsCI	GGATG	4 cut(s)	415, 475, 649, 754
CfoI	GCGC	4 cut(s)	35, 145, 380, 414
Cfr13I	GGNCC	2 cut(s)	127, 238
Cfr9I	CCCGGG	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	149, 349
CviAII	CATG	3 cut(s)	28, 611, 704
CviQI	GTAC	2 cut(s)	149, 349
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	5 cut(s)	101, 355, 482, 563, 666
DpnII	GATC	5 cut(s)	99, 353, 480, 561, 664
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	2 cut(s)	188, 291
Eco147I	AGGCCT	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	127, 238
Eco88I	CYCGRG	1 cut(s)	290
EcoRI	GAATTC	3 cut(s)	223, 614, 637
EcoRII	CCWGG	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	3 cut(s)	31, 614, 707
FaiI	YATR	3 cut(s)	29, 612, 705
FatI	CATG	3 cut(s)	27, 610, 703
Fnu4HI	GCNGC	5 cut(s)	36, 76, 87, 344, 697
FokI	GGATG	4 cut(s)	402, 482, 656, 761
Fsp4HI	GCNGC	5 cut(s)	36, 76, 87, 344, 697
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	4 cut(s)	34, 144, 379, 413
GluI	GCNGC	5 cut(s)	36, 76, 87, 344, 697
GsuI	CTGGAG	2 cut(s)	76, 392
HaeII	RGCGCY	3 cut(s)	36, 146, 415
HaeIII	GGCC	2 cut(s)	110, 429
HapII	CCGG	5 cut(s)	122, 241, 291, 426, 774
HhaI	GCGC	4 cut(s)	35, 145, 380, 414
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	31, 614, 707
Hin6I	GCGC	4 cut(s)	33, 143, 378, 412
HinP1I	GCGC	4 cut(s)	33, 143, 378, 412
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	7 cut(s)	154, 272, 284, 361, 445, 589, 736
HpaII	CCGG	5 cut(s)	122, 241, 291, 426, 774
HphI	GGTGA	2 cut(s)	328, 520
Hpy166II	GTNNAC	3 cut(s)	127, 297, 309
Hpy188I	TCNGA	4 cut(s)	136, 196, 480, 643
Hpy188III	TCNNGA	7 cut(s)	55, 214, 241, 449, 457, 467, 740
Hpy8I	GTNNAC	3 cut(s)	127, 297, 309
Hpy99I	CGWCG	3 cut(s)	140, 190, 569
HpyAV	CCTTC	4 cut(s)	473, 621, 774, 799
HpyCH4IV	ACGT	2 cut(s)	138, 648
HpyCH4V	TGCA	3 cut(s)	4, 532, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 340, 523, 548
HpySE526I	ACGT	2 cut(s)	138, 648
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	31, 614, 707
HspAI	GCGC	4 cut(s)	33, 143, 378, 412
KasI	GGCGCC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	99, 353, 480, 561, 664
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	4 cut(s)	124, 331, 411, 514
Lsp1109I	GCAGC	2 cut(s)	330, 683
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	138, 648
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	5 cut(s)	101, 355, 482, 563, 666
MboI	GATC	5 cut(s)	99, 353, 480, 561, 664
MboII	GAAGA	5 cut(s)	652, 734, 789, 796, 799
MflI	RGATCY	2 cut(s)	99, 353
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	4 cut(s)	223, 420, 614, 637
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	3 cut(s)	148, 278, 281
MmeI	TCCRAC	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	5 cut(s)	122, 241, 291, 426, 774
MspR9I	CCNGG	4 cut(s)	104, 291, 292, 774
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	116, 340, 523, 548
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	3 cut(s)	291, 292, 774
NdeII	GATC	5 cut(s)	99, 353, 480, 561, 664
NlaIII	CATG	3 cut(s)	31, 614, 707
NlaIV	GGNNCC	2 cut(s)	34, 633
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	361, 445, 589, 736
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	37, 77, 88, 345, 698
PleI	GAGTC	3 cut(s)	148, 278, 280
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	3 cut(s)	148, 278, 280
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	34, 633
PspPI	GGNCC	2 cut(s)	127, 238
PstI	CTGCAG	2 cut(s)	534, 701
PsuI	RGATCY	2 cut(s)	99, 353
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	2 cut(s)	150, 350
RsaNI	GTAC	2 cut(s)	149, 349
SapI	GCTCTTC	1 cut(s)	717
SatI	GCNGC	5 cut(s)	36, 76, 87, 344, 697
Sau3AI	GATC	5 cut(s)	99, 353, 480, 561, 664
Sau96I	GGNCC	2 cut(s)	127, 238
SchI	GAGTC	3 cut(s)	148, 278, 281
ScrFI	CCNGG	4 cut(s)	104, 291, 292, 774
SduI	GDGCHC	1 cut(s)	774
SfcI	CTRYAG	2 cut(s)	530, 697
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	2 cut(s)	127, 238
SmaI	CCCGGG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	223, 420, 614, 637
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	6 cut(s)	36, 75, 86, 173, 302, 314
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	4 cut(s)	102, 289, 290, 772
TaiI	ACGT	2 cut(s)	141, 651
TaqI	TCGA	7 cut(s)	227, 249, 369, 458, 564, 618, 663
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	223, 420, 614, 637
TatI	WGTACW	2 cut(s)	148, 348
TauI	GCSGC	3 cut(s)	38, 78, 89
TfiI	GAWTC	4 cut(s)	361, 445, 589, 736
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	343, 696
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	627
TspMI	CCCGGG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	127, 238
XapI	RAATTY	3 cut(s)	223, 614, 637
XmaI	CCCGGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.