Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Forward (+)

262275 .. 264997

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atggcttccgcggcgatattctctttgttgcgtcggcgaaggtcgccgtctctggaggcctttttagcttccgtggacctctccgacgtggcgcttgtacagactctcgtttcggtcacggcggagattgtgtcgtcgttttcagacaagttgttctatttccatagacggaattcgaggtcgctggtccggaaagtcgaagtctttctcgtgcttttggagtctttgaacgactcccccgagtcaactctgccgtggacggcggtgatttgcctcaaggagctttatctgctgctgtacagatccaagattctcctcgattactgcgcccagtccagtaagctctggcttttgctccagcaccatccgatttccggccatttccacgacttgaatcaggaaatctcgacccttctggatgtttttccaatcaacgaggttgagttgggggaggacgtgagggagcagattgagcttctgcagagacaggcgaggagggcgaggttgttgatcgacgaagctgacgaggagttgaggattcagctatttagtttcctacatgaattcgaggagggaagggtgccgaatttggatgacgtgtgggtgttcttcgatcagggattggggattagggatgccaagagctgcaaacatgagattgagttcttggaagagcagattgtgaagcacgagggggatgttgagcctacaatagaaaagaactttgtgacgagtttggtgctctcctcgtccacatcgtttgagaagaagtcaggtcaagggacgcccctacgattgcaccccacgattttcgcgaacttaaccattggaaagtcaagcgaaaacccttatcaaaaggtttacgctaactgctcaaagcataagacctccagttacagaccgcactttcacgtggactgtcgtggtcattctgaagaacaagtaactcaaaggttttctcgttacccccaatcaaccaacatgtcaactgaacaaggagagaatcacgtgactgctactgagggtcaaagtgtcactactaaccaggcaagtgagcctgtcaacactaccgttgtttctgatgccgcggaaagtgaagaaatagaggctttcgttccgaagcctattccagaggaagcgaccatcgaggaaaaactcacgatcatcatggagaatatcgagaaccatcgtgcgaaggtagctgctgactttgacagggaaaccgccaaaacagaccagcttatacgcgaactagaccagcgcattacccaacgtgctgaggatactaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

430

Amino Acids

49.09

Weight (kDa)

5.21

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccII	CGCG	4 cut(s)	11, 815, 1088, 1248
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	8 cut(s)	9, 11, 122, 263, 902, 1086, 1088, 1224
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	172, 563, 586
AcuI	CTGAAG	1 cut(s)	954
AcvI	CACGTG	2 cut(s)	913, 1009
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	2 cut(s)	99, 299
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	2 cut(s)	597, 981
AgsI	TTSAA	2 cut(s)	229, 394
AjiI	CACGTC	3 cut(s)	88, 457, 598
AjnI	CCWGG	1 cut(s)	1044
AluBI	AGCT	9 cut(s)	68, 283, 343, 475, 521, 544, 645, 1202, 1240
AluI	AGCT	9 cut(s)	68, 283, 343, 475, 521, 544, 645, 1202, 1240
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	2 cut(s)	54, 478
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	57, 376
ApeKI	GCWGC	3 cut(s)	292, 645, 1202
ApoI	RAATTY	3 cut(s)	172, 563, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	3 cut(s)	94, 329, 1263
AspS9I	GGNCC	2 cut(s)	76, 187
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	76, 187
BanI	GGYRCC	1 cut(s)	580
BauI	CACGAG	2 cut(s)	209, 689
BbrPI	CACGTG	2 cut(s)	913, 1009
Bbv12I	GWGCWC	1 cut(s)	744
BbvCI	CCTCAGC	1 cut(s)	1278
BbvI	GCAGC	3 cut(s)	279, 632, 1189
BccI	CCATC	3 cut(s)	372, 1151, 1194
BceAI	ACGGC	4 cut(s)	31, 135, 238, 276
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	1046
BciVI	GTATCC	1 cut(s)	1276
BcoDI	GTCTC	2 cut(s)	54, 478
BfaI	CTAG	1 cut(s)	1253
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	1276
BisI	GCNGC	5 cut(s)	12, 293, 646, 1086, 1203
BlsI	GCNGC	5 cut(s)	13, 294, 647, 1087, 1204
Bme1390I	CCNGG	1 cut(s)	1046
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	3 cut(s)	88, 457, 598
BmgT120I	GGNCC	2 cut(s)	76, 187
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	1046
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	625, 1072
BmuI	ACTGGG	1 cut(s)	325
BpmI	CTGGAG	3 cut(s)	74, 341, 874
Bpu10I	CCTNAGC	1 cut(s)	1278
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	2 cut(s)	913, 1009
BsaHI	GRCGYC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	9, 72, 254, 1086
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	331, 336, 891
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	1046
BseDI	CCNNGG	4 cut(s)	9, 72, 254, 1086
BseGI	GGATG	5 cut(s)	364, 424, 598, 640, 703
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	1011, 1269
BseNI	ACTGG	3 cut(s)	331, 336, 891
BseRI	GAGGAG	5 cut(s)	305, 508, 542, 584, 736
BseXI	GCAGC	3 cut(s)	279, 632, 1189
Bsh1236I	CGCG	4 cut(s)	11, 815, 1088, 1248
BshFI	GGCC	2 cut(s)	59, 378
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	744
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	190, 375
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	54, 478
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	796
BsnI	GGCC	2 cut(s)	59, 378
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 297
Bsp143I	GATC	4 cut(s)	302, 510, 613, 1161
Bsp68I	TCGCGA	1 cut(s)	815
BspACI	CCGC	8 cut(s)	9, 11, 122, 263, 902, 1086, 1088, 1224
BspANI	GGCC	2 cut(s)	59, 378
BspCNI	CTCAG	2 cut(s)	1012, 1270
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	4 cut(s)	11, 815, 1088, 1248
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	580
BsrGI	TGTACA	2 cut(s)	97, 297
BsrI	ACTGG	3 cut(s)	331, 336, 891
BssECI	CCNNGG	4 cut(s)	9, 72, 254, 1086
BssMI	GATC	4 cut(s)	302, 510, 613, 1161
BssNI	GRCGYC	1 cut(s)	785
BssSI	CACGAG	2 cut(s)	209, 689
Bst2BI	CACGAG	2 cut(s)	209, 689
Bst2UI	CCWGG	1 cut(s)	1046
Bst4CI	ACNGT	2 cut(s)	920, 1072
Bst6I	CTCTTC	1 cut(s)	666
BstACI	GRCGYC	1 cut(s)	785
BstAUI	TGTACA	2 cut(s)	97, 297
BstBAI	YACGTR	2 cut(s)	913, 1009
BstDEI	CTNAG	3 cut(s)	1020, 1278, 1287
BstDSI	CCRYGG	4 cut(s)	9, 72, 254, 1086
BstF5I	GGATG	5 cut(s)	364, 424, 598, 640, 703
BstFNI	CGCG	4 cut(s)	11, 815, 1088, 1248
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	94, 329, 1263
BstKTI	GATC	4 cut(s)	305, 513, 616, 1164
BstMAI	GTCTC	2 cut(s)	54, 478
BstMBI	GATC	4 cut(s)	302, 510, 613, 1161
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 43, 65, 289, 472, 497, 1199
BstNI	CCWGG	1 cut(s)	1046
BstNSI	RCATGY	1 cut(s)	985
BstSCI	CCNGG	1 cut(s)	1044
BstSFI	CTRYAG	1 cut(s)	479
BstUI	CGCG	4 cut(s)	11, 815, 1088, 1248
BstV1I	GCAGC	3 cut(s)	279, 632, 1189
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	1276
BsuRI	GGCC	2 cut(s)	59, 378
BtgI	CCRYGG	4 cut(s)	9, 72, 254, 1086
BtrI	CACGTC	3 cut(s)	88, 457, 598
BtsCI	GGATG	5 cut(s)	364, 424, 598, 640, 703
BtuMI	TCGCGA	1 cut(s)	815
CfoI	GCGC	3 cut(s)	94, 329, 1263
Cfr13I	GGNCC	2 cut(s)	76, 187
Cfr42I	CCGCGG	2 cut(s)	12, 1089
CseI	GACGC	2 cut(s)	20, 793
Csp6I	GTAC	2 cut(s)	98, 298
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	4 cut(s)	560, 653, 982, 1168
CviQI	GTAC	2 cut(s)	98, 298
DdeI	CTNAG	3 cut(s)	1020, 1278, 1287
DpnI	GATC	4 cut(s)	304, 512, 615, 1163
DpnII	GATC	4 cut(s)	302, 510, 613, 1161
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	76, 187
Eco57I	CTGAAG	1 cut(s)	954
Eco72I	CACGTG	2 cut(s)	913, 1009
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	2 cut(s)	172, 563
EcoRII	CCWGG	1 cut(s)	1044
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	4 cut(s)	563, 656, 985, 1171
FaiI	YATR	7 cut(s)	165, 561, 654, 882, 983, 1169, 1244
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	4 cut(s)	559, 652, 981, 1167
Fnu4HI	GCNGC	5 cut(s)	12, 293, 646, 1086, 1203
FokI	GGATG	5 cut(s)	351, 431, 605, 647, 710
Fsp4HI	GCNGC	5 cut(s)	12, 293, 646, 1086, 1203
FspBI	CTAG	1 cut(s)	1253
GlaI	GCGC	3 cut(s)	93, 328, 1262
GluI	GCNGC	5 cut(s)	12, 293, 646, 1086, 1203
GsuI	CTGGAG	3 cut(s)	74, 341, 874
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	59, 378
HapII	CCGG	2 cut(s)	190, 375
HgaI	GACGC	2 cut(s)	20, 793
HhaI	GCGC	3 cut(s)	94, 329, 1263
Hin1I	GRCGYC	1 cut(s)	785
Hin1II	CATG	4 cut(s)	563, 656, 985, 1171
Hin6I	GCGC	3 cut(s)	92, 327, 1261
HinP1I	GCGC	3 cut(s)	92, 327, 1261
HincII	GTYRAC	3 cut(s)	246, 987, 1063
HindII	GTYRAC	3 cut(s)	246, 987, 1063
HinfI	GANTC	8 cut(s)	103, 221, 233, 242, 310, 394, 538, 1003
HpaII	CCGG	2 cut(s)	190, 375
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	8 cut(s)	76, 246, 258, 753, 862, 916, 987, 1063
Hpy188I	TCNGA	6 cut(s)	85, 145, 369, 934, 1081, 1119
Hpy188III	TCNNGA	9 cut(s)	53, 190, 398, 406, 416, 814, 1130, 1159, 1180
Hpy8I	GTNNAC	8 cut(s)	76, 246, 258, 753, 862, 916, 987, 1063
Hpy99I	CGWCG	4 cut(s)	36, 89, 139, 518
HpyAV	CCTTC	4 cut(s)	33, 422, 570, 1189
HpyCH4III	ACNGT	2 cut(s)	920, 1072
HpyCH4IV	ACGT	6 cut(s)	87, 456, 597, 912, 1008, 1273
HpyCH4V	TGCA	3 cut(s)	481, 648, 799
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 43, 65, 289, 472, 497, 1199
HpyF3I	CTNAG	3 cut(s)	1020, 1278, 1287
HpySE526I	ACGT	6 cut(s)	87, 456, 597, 912, 1008, 1273
Hsp92I	GRCGYC	1 cut(s)	785
Hsp92II	CATG	4 cut(s)	563, 656, 985, 1171
HspAI	GCGC	3 cut(s)	92, 327, 1261
Kpn2I	TCCGGA	1 cut(s)	189
KspI	CCGCGG	2 cut(s)	12, 1089
Kzo9I	GATC	4 cut(s)	302, 510, 613, 1161
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	3 cut(s)	280, 360, 463
Lsp1109I	GCAGC	3 cut(s)	279, 632, 1189
LweI	GCATC	2 cut(s)	625, 1072
MaeI	CTAG	1 cut(s)	1253
MaeII	ACGT	6 cut(s)	87, 456, 597, 912, 1008, 1273
MaeIII	GTNAC	7 cut(s)	115, 727, 893, 943, 962, 1009, 1033
MalI	GATC	4 cut(s)	304, 512, 615, 1163
MboI	GATC	4 cut(s)	302, 510, 613, 1161
MboII	GAAGA	5 cut(s)	601, 683, 778, 947, 1109
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	3 cut(s)	172, 563, 586
MlyI	GAGTC	4 cut(s)	97, 227, 230, 251
MmeI	TCCRAC	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	821
MspA1I	CMGCKG	2 cut(s)	11, 1088
MspI	CCGG	2 cut(s)	190, 375
MspR9I	CCNGG	1 cut(s)	1046
MvaI	CCWGG	1 cut(s)	1046
MvnI	CGCG	4 cut(s)	11, 815, 1088, 1248
MwoI	GCNNNNNNNGC	7 cut(s)	11, 43, 65, 289, 472, 497, 1199
NdeII	GATC	4 cut(s)	302, 510, 613, 1161
NlaIII	CATG	4 cut(s)	563, 656, 985, 1171
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	4 cut(s)	115, 727, 1009, 1033
NruI	TCGCGA	1 cut(s)	815
NspI	RCATGY	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	981
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	4 cut(s)	237, 522, 755, 812
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	4 cut(s)	310, 394, 538, 1003
PkrI	GCNGC	5 cut(s)	13, 294, 647, 1087, 1204
PleI	GAGTC	4 cut(s)	97, 227, 229, 250
PmaCI	CACGTG	2 cut(s)	913, 1009
PmlI	CACGTG	2 cut(s)	913, 1009
PpsI	GAGTC	4 cut(s)	97, 227, 229, 250
Ppu21I	YACGTR	2 cut(s)	913, 1009
PscI	ACATGT	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	1044
PspCI	CACGTG	2 cut(s)	913, 1009
PspGI	CCWGG	1 cut(s)	1044
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	76, 187
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	815
RsaI	GTAC	2 cut(s)	99, 299
RsaNI	GTAC	2 cut(s)	98, 298
SacII	CCGCGG	2 cut(s)	12, 1089
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	5 cut(s)	12, 293, 646, 1086, 1203
Sau3AI	GATC	4 cut(s)	302, 510, 613, 1161
Sau96I	GGNCC	2 cut(s)	76, 187
SchI	GAGTC	4 cut(s)	97, 227, 230, 251
ScrFI	CCNGG	1 cut(s)	1046
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	2 cut(s)	625, 1072
SfcI	CTRYAG	1 cut(s)	479
Sfr303I	CCGCGG	2 cut(s)	12, 1089
SgrBI	CCGCGG	2 cut(s)	12, 1089
SinI	GGWCC	2 cut(s)	76, 187
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	172, 563, 586
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	8 cut(s)	9, 11, 122, 263, 902, 1086, 1088, 1224
SspMI	CTAG	1 cut(s)	1253
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	1044
TaaI	ACNGT	2 cut(s)	920, 1072
TaiI	ACGT	6 cut(s)	90, 459, 600, 915, 1011, 1276
TaqI	TCGA	9 cut(s)	176, 198, 318, 407, 513, 567, 612, 1146, 1179
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	172, 563, 586
TatI	WGTACW	2 cut(s)	97, 297
TauI	GCSGC	2 cut(s)	14, 1088
TfiI	GAWTC	4 cut(s)	310, 394, 538, 1003
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TseFI	GTSAC	4 cut(s)	115, 727, 1009, 1033
TseI	GCWGC	3 cut(s)	292, 645, 1202
Tsp45I	GTSAC	4 cut(s)	115, 727, 1009, 1033
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	2 cut(s)	61, 184
VpaK11BI	GGWCC	2 cut(s)	76, 187
XapI	RAATTY	3 cut(s)	172, 563, 586
XceI	RCATGY	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.