Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

46456786 .. 46457085

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG344900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTTCCGCGACGATATTCTCTTCGTTGCGTCGGCGGAGGTCGCCGTCTCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGAGCTTGTACAGACACTCGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAAGTTGTTCTATTTCCAGAGACGGAATTCGAGGTCGCTGGTCCGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCCCCGGGTCAACTCTGCCGTGGACGGCGGTGATTTACCTCAAGGAGCTTTATCTGCTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

8.1

Isoelectric Point (pI)

69.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	4 cut(s)	9, 37, 122, 263
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	68, 94, 283
AluI	AGCT	3 cut(s)	68, 94, 283
Alw26I	GTCTC	2 cut(s)	54, 160
Ama87I	CYCGRG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	2 cut(s)	76, 187
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	76, 187
BauI	CACGAG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	279
BceAI	ACGGC	4 cut(s)	31, 135, 238, 276
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	2 cut(s)	54, 160
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	240, 241
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	76, 187
BmrFI	CCNGG	2 cut(s)	240, 241
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	240, 241
BsaJI	CCNNGG	3 cut(s)	238, 239, 254
BsaWI	WCCGGW	2 cut(s)	70, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	238, 239, 254
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	71, 190, 240
BsmAI	GTCTC	2 cut(s)	54, 160
BsmBI	CGTCTC	2 cut(s)	54, 160
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	97
BspACI	CCGC	4 cut(s)	9, 37, 122, 263
BspANI	GGCC	1 cut(s)	59
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	238, 239, 254
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	11
BstMAI	GTCTC	2 cut(s)	54, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 65, 289
BstSCI	CCNGG	2 cut(s)	238, 239
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	76, 187
Cfr9I	CCCGGG	1 cut(s)	239
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	98
CviJI	RGCY	5 cut(s)	5, 59, 68, 94, 283
CviKI_1	RGCY	5 cut(s)	5, 59, 68, 94, 283
CviQI	GTAC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	2 cut(s)	52, 137
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	76, 187
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	172
Esp3I	CGTCTC	2 cut(s)	54, 160
FaiI	YATR	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	71, 190, 240
HgaI	GACGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	221, 233
HpaII	CCGG	3 cut(s)	71, 190, 240
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	76, 246, 258
Hpy188I	TCNGA	2 cut(s)	85, 145
Hpy188III	TCNNGA	3 cut(s)	53, 163, 190
Hpy8I	GTNNAC	3 cut(s)	76, 246, 258
Hpy99I	CGWCG	4 cut(s)	16, 36, 89, 139
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 65, 289
HpySE526I	ACGT	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	73, 91, 280
LpnPI	CCDG	6 cut(s)	38, 84, 170, 176, 203, 253
Lsp1109I	GCAGC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	15
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	227, 230
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	33, 49, 89, 171, 193, 284
MroI	TCCGGA	1 cut(s)	189
MspI	CCGG	3 cut(s)	71, 190, 240
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	43, 65, 289
NciI	CCSGG	2 cut(s)	240, 241
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	2 cut(s)	227, 229
PpsI	GAGTC	2 cut(s)	227, 229
PspPI	GGNCC	2 cut(s)	76, 187
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	293
Sau96I	GGNCC	2 cut(s)	76, 187
SchI	GAGTC	2 cut(s)	227, 230
ScrFI	CCNGG	2 cut(s)	240, 241
SetI	ASST	9 cut(s)	44, 70, 81, 90, 96, 182, 204, 276, 285
SinI	GGWCC	2 cut(s)	76, 187
SmaI	CCCGGG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	9, 37, 122, 263
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	238, 239
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	176, 198
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	76, 187
XapI	RAATTY	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.