Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002176.1

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Forward (+)

57724 .. 58521

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002176.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ctgtctacttccttttcccaattgttttccacggcttccgcggcgatattctcttcgttgcgtcgacggaggtctccgtctctgaaggcctttttagctccggtggaccactccgacgtggctcttgtacagactctcgtttcggtcgcggcagagattgtgtcatcgttttcagacaagttgttctatttccagagacggaattcgaggtcgctggttcggaaagtcgaggtctttctcgtgcttttggagtctttgaacgactcccccgggtcaactctgccgtggacggcggtgatttgcctcaaggagctttatctgctgctgtatagatccaagattctcctcgattactgcacccagtccagtaagctctggcttttgctccagcaccatccgatttctggccatttccacgacttgaatcaagaaatctcgacccttctggatgtttttccgatcgacgaggttgagttgggggaggacgtgagggagcagattgagcttctgcagagacaggccaggagggcgaggttgttgatcgacgaagccgacgaggagttgaggattcagctgtttagtttcctacatgaattcgaggagggaagggtgccgaattcggatgacttgcgggtgttcttcgatcagggattggggattagggatgccaagagctgcagacatgagattgagttcttggaagagcagattgtgaagcacgagggggatgttgagcctacaatgtctgtgtccggaagaaggaagaagaaacagataaaaacgaaggaaaaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

265

Amino Acids

30.54

Weight (kDa)

6.29

Isoelectric Point (pI)

64.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccI	GTMKAC	2 cut(s)	5, 64
AccII	CGCG	2 cut(s)	41, 149
AccIII	TCCGGA	1 cut(s)	752
AciI	CCGC	5 cut(s)	39, 41, 149, 293, 631
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	202, 593, 616
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	404, 759
AgsI	TTSAA	2 cut(s)	259, 424
AjiI	CACGTC	2 cut(s)	118, 487
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	6 cut(s)	98, 313, 373, 505, 574, 675
AluI	AGCT	6 cut(s)	98, 313, 373, 505, 574, 675
Alw26I	GTCTC	4 cut(s)	78, 84, 190, 508
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	752
AoxI	GGCC	3 cut(s)	87, 406, 519
ApeKI	GCWGC	2 cut(s)	322, 675
ApoI	RAATTY	3 cut(s)	202, 593, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	270, 271
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	610
BauI	CACGAG	2 cut(s)	239, 719
BbvI	GCAGC	2 cut(s)	309, 662
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	3 cut(s)	48, 268, 306
BciT130I	CCWGG	1 cut(s)	523
BcnI	CCSGG	2 cut(s)	270, 271
BcoDI	GTCTC	4 cut(s)	78, 84, 190, 508
BfmI	CTRYAG	2 cut(s)	509, 676
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	4 cut(s)	42, 150, 323, 676
BlsI	GCNGC	4 cut(s)	43, 151, 324, 677
Bme1390I	CCNGG	3 cut(s)	270, 271, 523
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	2 cut(s)	118, 487
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	3 cut(s)	270, 271, 523
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	1 cut(s)	355
BoxI	GACNNNNGTC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	270, 271
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	5 cut(s)	30, 39, 268, 269, 284
BsaWI	WCCGGW	2 cut(s)	100, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 759
Bse1I	ACTGG	2 cut(s)	361, 366
BseAI	TCCGGA	1 cut(s)	752
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	5 cut(s)	30, 39, 268, 269, 284
BseGI	GGATG	5 cut(s)	394, 454, 628, 670, 733
BseLI	CCNNNNNNNGG	2 cut(s)	404, 759
BseNI	ACTGG	2 cut(s)	361, 366
BseRI	GAGGAG	3 cut(s)	335, 572, 614
BseXI	GCAGC	2 cut(s)	309, 662
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	41, 149
Bsh1285I	CGRYCG	2 cut(s)	147, 462
BshFI	GGCC	3 cut(s)	89, 408, 521
BshNI	GGYRCC	1 cut(s)	610
BsiEI	CGRYCG	2 cut(s)	147, 462
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	101, 270, 753
BslI	CCNNNNNNNGG	2 cut(s)	404, 759
BsmAI	GTCTC	4 cut(s)	78, 84, 190, 508
BsmBI	CGTCTC	2 cut(s)	84, 190
BsnI	GGCC	3 cut(s)	89, 408, 521
Bso31I	GGTCTC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	752
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	332, 459, 540, 643
BspACI	CCGC	5 cut(s)	39, 41, 149, 293, 631
BspANI	GGCC	3 cut(s)	89, 408, 521
BspEI	TCCGGA	1 cut(s)	752
BspFNI	CGCG	2 cut(s)	41, 149
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	2 cut(s)	513, 680
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	361, 366
BssECI	CCNNGG	5 cut(s)	30, 39, 268, 269, 284
BssMI	GATC	4 cut(s)	332, 459, 540, 643
BssSI	CACGAG	2 cut(s)	239, 719
Bst2BI	CACGAG	2 cut(s)	239, 719
Bst2UI	CCWGG	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	58, 696
BstAUI	TGTACA	1 cut(s)	127
BstDSI	CCRYGG	3 cut(s)	30, 39, 284
BstF5I	GGATG	5 cut(s)	394, 454, 628, 670, 733
BstFNI	CGCG	2 cut(s)	41, 149
BstKTI	GATC	4 cut(s)	335, 462, 543, 646
BstMAI	GTCTC	4 cut(s)	78, 84, 190, 508
BstMBI	GATC	4 cut(s)	332, 459, 540, 643
BstMCI	CGRYCG	2 cut(s)	147, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 95, 319, 502, 527
BstNI	CCWGG	1 cut(s)	523
BstPAI	GACNNNNGTC	1 cut(s)	70
BstSCI	CCNGG	3 cut(s)	268, 269, 521
BstSFI	CTRYAG	2 cut(s)	509, 676
BstUI	CGCG	2 cut(s)	41, 149
BstV1I	GCAGC	2 cut(s)	309, 662
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	89, 408, 521
BtgI	CCRYGG	3 cut(s)	30, 39, 284
BtrI	CACGTC	2 cut(s)	118, 487
BtsCI	GGATG	5 cut(s)	394, 454, 628, 670, 733
Cfr13I	GGNCC	1 cut(s)	106
Cfr42I	CCGCGG	1 cut(s)	42
Cfr9I	CCCGGG	1 cut(s)	269
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	590, 683
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	4 cut(s)	334, 461, 542, 645
DpnII	GATC	4 cut(s)	332, 459, 540, 643
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	58, 696
EarI	CTCTTC	2 cut(s)	58, 696
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	269
EcoRI	GAATTC	3 cut(s)	202, 593, 616
EcoRII	CCWGG	1 cut(s)	521
Esp3I	CGTCTC	2 cut(s)	84, 190
FaeI	CATG	2 cut(s)	593, 686
FaiI	YATR	3 cut(s)	330, 591, 684
FatI	CATG	2 cut(s)	589, 682
FauI	CCCGC	1 cut(s)	624
FblI	GTMKAC	2 cut(s)	5, 64
Fnu4HI	GCNGC	4 cut(s)	42, 150, 323, 676
FokI	GGATG	5 cut(s)	381, 461, 635, 677, 740
Fsp4HI	GCNGC	4 cut(s)	42, 150, 323, 676
GluI	GCNGC	4 cut(s)	42, 150, 323, 676
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	89, 408, 521
HapII	CCGG	3 cut(s)	101, 270, 753
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	593, 686
HincII	GTYRAC	2 cut(s)	65, 276
HindII	GTYRAC	2 cut(s)	65, 276
HinfI	GANTC	6 cut(s)	133, 251, 263, 340, 424, 568
HpaII	CCGG	3 cut(s)	101, 270, 753
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	5 cut(s)	6, 65, 106, 276, 288
Hpy188I	TCNGA	7 cut(s)	84, 115, 175, 222, 399, 459, 622
Hpy188III	TCNNGA	5 cut(s)	193, 428, 436, 446, 753
Hpy8I	GTNNAC	5 cut(s)	6, 65, 106, 276, 288
Hpy99I	CGWCG	6 cut(s)	66, 69, 119, 467, 548, 557
HpyAV	CCTTC	5 cut(s)	79, 452, 600, 753, 778
HpyCH4IV	ACGT	2 cut(s)	117, 486
HpyCH4V	TGCA	3 cut(s)	357, 511, 678
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 95, 319, 502, 527
HpySE526I	ACGT	2 cut(s)	117, 486
Hsp92II	CATG	2 cut(s)	593, 686
Kpn2I	TCCGGA	1 cut(s)	752
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	332, 459, 540, 643
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	4 cut(s)	103, 310, 390, 493
Lsp1109I	GCAGC	2 cut(s)	309, 662
LweI	GCATC	1 cut(s)	655
MaeII	ACGT	2 cut(s)	117, 486
MalI	GATC	4 cut(s)	334, 461, 542, 645
MboI	GATC	4 cut(s)	332, 459, 540, 643
MboII	GAAGA	6 cut(s)	45, 631, 713, 768, 775, 778
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	332
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	4 cut(s)	20, 202, 593, 616
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	3 cut(s)	127, 257, 260
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	41, 574
MspI	CCGG	3 cut(s)	101, 270, 753
MspR9I	CCNGG	3 cut(s)	270, 271, 523
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	2 cut(s)	41, 149
MwoI	GCNNNNNNNGC	5 cut(s)	41, 95, 319, 502, 527
NciI	CCSGG	2 cut(s)	270, 271
NdeII	GATC	4 cut(s)	332, 459, 540, 643
NlaIII	CATG	2 cut(s)	593, 686
NlaIV	GGNNCC	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	549, 552
PfeI	GAWTC	3 cut(s)	340, 424, 568
PkrI	GCNGC	4 cut(s)	43, 151, 324, 677
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	3 cut(s)	127, 257, 259
PpsI	GAGTC	3 cut(s)	127, 257, 259
PshAI	GACNNNNGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	2 cut(s)	513, 680
PsuI	RGATCY	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	696
SatI	GCNGC	4 cut(s)	42, 150, 323, 676
Sau3AI	GATC	4 cut(s)	332, 459, 540, 643
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	3 cut(s)	127, 257, 260
ScrFI	CCNGG	3 cut(s)	270, 271, 523
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	509, 676
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SgrDI	CGTCGACG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	106
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	20, 202, 593, 616
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	39, 41, 149, 293, 631
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	268, 269, 521
TaiI	ACGT	2 cut(s)	120, 489
TaqI	TCGA	9 cut(s)	64, 206, 228, 348, 437, 462, 543, 597, 642
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	4 cut(s)	20, 202, 593, 616
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	2 cut(s)	44, 152
TfiI	GAWTC	3 cut(s)	340, 424, 568
TseI	GCWGC	2 cut(s)	322, 675
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	3 cut(s)	66, 82, 214
TspMI	CCCGGG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	3 cut(s)	202, 593, 616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmaI	CCCGGG	1 cut(s)	269
XmiI	GTMKAC	2 cut(s)	5, 64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.