Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005267.1

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

41905 .. 42480

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005267.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ctgtctgcttccttttcccaattgttttccatcgcttccgcggcgatattctcttcgttgcgtcggcggaggtcgccgtctctggaggcctttttagctccggtggacctctccgacgtggcgcttgtacagactcttatttcggtcacggcggagattgtgtcgtcgttttcagacaagttgttctatttccagagacgaaattcgaggtcgctggtccggaaagtcgaggtctttctcgtgcttttggagtctttgaacgactcccccgggtcaactctgccatggacggcggtgatttgcctcaaggagctttatctgctgctgtatagatccaagattctcctcgattactgcgcccagtccagtaagctctggcttttgctccagcaccatccgatttccggccatttccaagacttgaataaggaaatctcgacccttctggatgtttttccgatcgacgaggttgagttgggggaggacgtgagggagcagattgagcttctgcagagacaggagggcgaggttgttgatcgacgaagccgacgaggaattgaggattcagctatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

191

Amino Acids

21.7

Weight (kDa)

5.45

Isoelectric Point (pI)

73.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	5 cut(s)	39, 41, 67, 152, 293
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	259, 424
AjiI	CACGTC	2 cut(s)	118, 487
AluBI	AGCT	5 cut(s)	98, 313, 373, 505, 569
AluI	AGCT	5 cut(s)	98, 313, 373, 505, 569
Alw26I	GTCTC	3 cut(s)	84, 190, 508
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	2 cut(s)	87, 406
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspLEI	GCGC	2 cut(s)	124, 359
AspS9I	GGNCC	2 cut(s)	106, 217
AsuC2I	CCSGG	2 cut(s)	270, 271
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	106, 217
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	38, 402
BceAI	ACGGC	3 cut(s)	61, 165, 306
BcnI	CCSGG	2 cut(s)	270, 271
BcoDI	GTCTC	3 cut(s)	84, 190, 508
BfmI	CTRYAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	2 cut(s)	42, 323
BlsI	GCNGC	2 cut(s)	43, 324
Bme1390I	CCNGG	2 cut(s)	270, 271
Bme18I	GGWCC	2 cut(s)	106, 217
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	2 cut(s)	118, 487
BmgT120I	GGNCC	2 cut(s)	106, 217
BmrFI	CCNGG	2 cut(s)	270, 271
BmrI	ACTGGG	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	104, 371
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	270, 271
BsaJI	CCNNGG	4 cut(s)	39, 268, 269, 284
BsaWI	WCCGGW	2 cut(s)	100, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	361, 366
BseAI	TCCGGA	1 cut(s)	219
BseDI	CCNNGG	4 cut(s)	39, 268, 269, 284
BseGI	GGATG	2 cut(s)	394, 454
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	361, 366
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	89, 408
BsiEI	CGRYCG	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	101, 220, 270, 405
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	3 cut(s)	84, 190, 508
BsmBI	CGTCTC	2 cut(s)	84, 190
BsnI	GGCC	2 cut(s)	89, 408
BsoBI	CYCGRG	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	332, 459, 535
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	5 cut(s)	39, 41, 67, 152, 293
BspANI	GGCC	2 cut(s)	89, 408
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	361, 366
BssECI	CCNNGG	4 cut(s)	39, 268, 269, 284
BssMI	GATC	3 cut(s)	332, 459, 535
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	39, 284
BstF5I	GGATG	2 cut(s)	394, 454
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 359
BstKTI	GATC	3 cut(s)	335, 462, 538
BstMAI	GTCTC	3 cut(s)	84, 190, 508
BstMBI	GATC	3 cut(s)	332, 459, 535
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 73, 95, 319, 502
BstSCI	CCNGG	2 cut(s)	268, 269
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	89, 408
BtgI	CCRYGG	2 cut(s)	39, 284
BtgZI	GCGATG	1 cut(s)	16
BtrI	CACGTC	2 cut(s)	118, 487
BtsCI	GGATG	2 cut(s)	394, 454
CfoI	GCGC	2 cut(s)	124, 359
Cfr13I	GGNCC	2 cut(s)	106, 217
Cfr42I	CCGCGG	1 cut(s)	42
Cfr9I	CCCGGG	1 cut(s)	269
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	9 cut(s)	89, 98, 313, 373, 379, 408, 505, 546, 569
CviKI_1	RGCY	9 cut(s)	89, 98, 313, 373, 379, 408, 505, 546, 569
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	3 cut(s)	334, 461, 537
DpnII	GATC	3 cut(s)	332, 459, 535
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	2 cut(s)	82, 167
Eco130I	CCWWGG	1 cut(s)	284
Eco147I	AGGCCT	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	106, 217
Eco88I	CYCGRG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
Esp3I	CGTCTC	2 cut(s)	84, 190
FaeI	CATG	1 cut(s)	288
FaiI	YATR	2 cut(s)	286, 330
FatI	CATG	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	42, 323
FokI	GGATG	2 cut(s)	381, 461
Fsp4HI	GCNGC	2 cut(s)	42, 323
GlaI	GCGC	2 cut(s)	123, 358
GluI	GCNGC	2 cut(s)	42, 323
GsuI	CTGGAG	2 cut(s)	104, 371
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	89, 408
HapII	CCGG	4 cut(s)	101, 220, 270, 405
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	124, 359
Hin1II	CATG	1 cut(s)	288
Hin6I	GCGC	2 cut(s)	122, 357
HinP1I	GCGC	2 cut(s)	122, 357
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	5 cut(s)	133, 251, 263, 340, 563
HpaII	CCGG	4 cut(s)	101, 220, 270, 405
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	106, 276
Hpy188I	TCNGA	4 cut(s)	115, 175, 399, 459
Hpy188III	TCNNGA	5 cut(s)	83, 193, 220, 436, 446
Hpy8I	GTNNAC	2 cut(s)	106, 276
Hpy99I	CGWCG	6 cut(s)	66, 119, 169, 467, 543, 552
HpyAV	CCTTC	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	117, 486
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 73, 95, 319, 502
HpySE526I	ACGT	2 cut(s)	117, 486
Hsp92II	CATG	1 cut(s)	288
HspAI	GCGC	2 cut(s)	122, 357
Kpn2I	TCCGGA	1 cut(s)	219
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	332, 459, 535
LmnI	GCTCC	4 cut(s)	103, 310, 390, 493
Lsp1109I	GCAGC	1 cut(s)	309
MaeII	ACGT	2 cut(s)	117, 486
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	334, 461, 537
MboI	GATC	3 cut(s)	332, 459, 535
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	20, 202, 555
MlyI	GAGTC	3 cut(s)	127, 257, 260
MmeI	TCCRAC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	4 cut(s)	101, 220, 270, 405
MspR9I	CCNGG	2 cut(s)	270, 271
MunI	CAATTG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	41, 73, 95, 319, 502
NciI	CCSGG	2 cut(s)	270, 271
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	3 cut(s)	332, 459, 535
NlaIII	CATG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	2 cut(s)	544, 547
PfeI	GAWTC	2 cut(s)	340, 563
PkrI	GCNGC	2 cut(s)	43, 324
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	3 cut(s)	127, 257, 259
PpsI	GAGTC	3 cut(s)	127, 257, 259
PspPI	GGNCC	2 cut(s)	106, 217
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	2 cut(s)	42, 323
Sau3AI	GATC	3 cut(s)	332, 459, 535
Sau96I	GGNCC	2 cut(s)	106, 217
SchI	GAGTC	3 cut(s)	127, 257, 260
ScrFI	CCNGG	2 cut(s)	270, 271
SfcI	CTRYAG	1 cut(s)	509
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	106, 217
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	20, 202, 555
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	39, 41, 67, 152, 293
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	268, 269
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	120, 489
TaqI	TCGA	6 cut(s)	206, 228, 348, 437, 462, 538
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	3 cut(s)	20, 202, 555
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	340, 563
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	145
TspMI	CCCGGG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	106, 217
XapI	RAATTY	1 cut(s)	202
XmaI	CCCGGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.