Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Forward (+)

26965002 .. 26965334

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTTCCGCGGCGATATTCTCTTCGTTGCGTCGGCGGAGGTCGCCGTCTCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGTGCTTGTACAGACTCTTGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAAGTTGTTCTATTTCCAGAGACGGAATTCGAGGTCGCTGGTCAGGAAAGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCCCCGGGTCAACTCTGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATTCTCCTCGATTACTGCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

9.1

Isoelectric Point (pI)

68.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	9, 11, 37, 122, 263
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	2 cut(s)	99, 299
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	2 cut(s)	68, 283
AluI	AGCT	2 cut(s)	68, 283
Alw26I	GTCTC	2 cut(s)	54, 160
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	279
BceAI	ACGGC	4 cut(s)	31, 135, 238, 276
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	2 cut(s)	54, 160
BfaI	CTAG	1 cut(s)	331
BisI	GCNGC	2 cut(s)	12, 293
BlsI	GCNGC	2 cut(s)	13, 294
Bme1390I	CCNGG	2 cut(s)	240, 241
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	240, 241
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	240, 241
BsaJI	CCNNGG	4 cut(s)	9, 238, 239, 254
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
BseDI	CCNNGG	4 cut(s)	9, 238, 239, 254
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	71, 240
BsmAI	GTCTC	2 cut(s)	54, 160
BsmBI	CGTCTC	2 cut(s)	54, 160
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	239
Bsp1407I	TGTACA	2 cut(s)	97, 297
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	5 cut(s)	9, 11, 37, 122, 263
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	11
BspPI	GGATC	1 cut(s)	297
BsrGI	TGTACA	2 cut(s)	97, 297
BssECI	CCNNGG	4 cut(s)	9, 238, 239, 254
BssMI	GATC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	28
BstAUI	TGTACA	2 cut(s)	97, 297
BstDSI	CCRYGG	2 cut(s)	9, 254
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	54, 160
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 43, 65, 289
BstSCI	CCNGG	2 cut(s)	238, 239
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	2 cut(s)	9, 254
BtrI	CACGTC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	76
Cfr42I	CCGCGG	1 cut(s)	12
Cfr9I	CCCGGG	1 cut(s)	239
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	98, 298
CviJI	RGCY	4 cut(s)	5, 59, 68, 283
CviKI_1	RGCY	4 cut(s)	5, 59, 68, 283
CviQI	GTAC	2 cut(s)	98, 298
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	2 cut(s)	52, 137
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	172
Esp3I	CGTCTC	2 cut(s)	54, 160
Fnu4HI	GCNGC	2 cut(s)	12, 293
Fsp4HI	GCNGC	2 cut(s)	12, 293
FspBI	CTAG	1 cut(s)	331
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	12, 293
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	71, 240
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	103, 221, 233, 310
HpaII	CCGG	2 cut(s)	71, 240
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	76, 246, 258
Hpy188I	TCNGA	2 cut(s)	85, 145
Hpy188III	TCNNGA	3 cut(s)	53, 163, 190
Hpy8I	GTNNAC	3 cut(s)	76, 246, 258
Hpy99I	CGWCG	3 cut(s)	36, 89, 139
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 43, 65, 289
HpySE526I	ACGT	1 cut(s)	87
HspAI	GCGC	1 cut(s)	327
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	73, 280
LpnPI	CCDG	6 cut(s)	38, 84, 170, 175, 176, 253
Lsp1109I	GCAGC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	97, 227, 230
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	33, 49, 89, 171, 193, 284, 326
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	71, 240
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	11, 43, 65, 289
NciI	CCSGG	2 cut(s)	240, 241
NdeII	GATC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	13, 294
PleI	GAGTC	3 cut(s)	97, 227, 229
PpsI	GAGTC	3 cut(s)	97, 227, 229
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	2 cut(s)	99, 299
RsaNI	GTAC	2 cut(s)	98, 298
SacII	CCGCGG	1 cut(s)	12
SatI	GCNGC	2 cut(s)	12, 293
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	3 cut(s)	97, 227, 230
ScrFI	CCNGG	2 cut(s)	240, 241
SetI	ASST	7 cut(s)	44, 70, 81, 90, 182, 204, 285
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	9, 11, 37, 122, 263
SspMI	CTAG	1 cut(s)	331
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	238, 239
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	176, 198, 318
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	172
TatI	WGTACW	2 cut(s)	97, 297
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.