pycom06g02990

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013326
Physical Location & Seq
Reverse (-)
3785861 .. 3789471
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGGATTATGGTAGAGAGAGCAATGCGGTCCAGGTAATCACTGGGAATAGTGGTGGTGATATTTGGTCTGGTGACCAAGCAGTTTGGGCTACGGAGGATGAGTACCGAGTTTGGAATAATGGTGACGCGATGGCGGACACCATGTCCAACTCAAGTTATGATCAAAGGCAATCGCAAAGTCGCTCTGGAAGCGAACCTCCAAATAAGAAATCAAGGAACTCCCAAGATGCAACTTCGTCTAACCGGTCGAAAGCCATTGGGAAAATGTTCTTCAAAACCAAACTTTGTTGCAAATTCCGTGCTGGGACGTGCCCCTATGTCACCAATTGTAACTTTGCTCATAGCATTGAGGAGCTTCGGAGACCGCCACCAAATTGGCAAGATATTGTGGCTGCCCATGAGGAAGAAAAGGCTGTATCTTCAGAGCCAAGGGAAGAGTATCAAATTCCAATCGTCTCTACAGGTTTTGGTGTGGAGACTCCAAGATCCTATAAAGGGAGGCATTGCAAGAAGTTTTATACTGAGGAAGGGTGTTCTTATGGGGATAATTGCACTTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTGGCAATAAGTTTAGGTCCTGGAGGATATGGCGGTGCTGCTGCTGCTGTGAATGGAGCAAATAACAAGCCATCAAACTGGAAAACAAGGATTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTAGCAGAATTACACCGGTATGGTGGTGGGCTTGTGGAGGGAGAAACTAGAGATTCTTCTTCAGTCGCCCCTGACAATAAGCAGGGAGCAATGCCTTCGAAAACTCCAGGAGATGCTGTGGTAGTATCAGTCCCTCTAGTTTCTCATTCTGATGTTTATCACCTTGGAGTCCCGTCACAAAGATCGATCCATTGTAATTCAGAGATCAGGGCCGCGAGCCCATCAGAAATGGAAGGGACCAGACAAAATCAGTAG

Protein Analysis

334

Amino Acids

36.44

Weight (kDa)

6.56

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 91 - 115 6e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 167 - 189 4e-09 CCCH-type zinc finger
zf-CCCH PF00642 224 - 249 5e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L PF25585 225 - 248 4.2e-06 DUS3L CCCH zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32360
fragaria_vesca FvH4_5g22400 FvH4_5g22400
malus_domestica MD06G1036400.v1.1
prunus_persica Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis pycom06g02990 pycom16g24210
rosa_chinensis RchiOBHm_Chr7g0210151
rosa_laevigata RLG00000003060
rosa_multiflora Rmu_sc0001656.1_g000001
rosa_roxburghii Rroxscaffold_3G00248580
rosa_rugosa Rorug07G0118900
rosa_samantha Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana Rw7G021450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 128, 962
AciI CCGC 5 cut(s) 26, 134, 365, 624, 960
AclWI GGATC 2 cut(s) 480, 928
AcsI RAATTY 2 cut(s) 293, 444
AcuI CTGAAG 2 cut(s) 405, 792
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 495
AgeI ACCGGT 2 cut(s) 243, 762
AgsI TTSAA 1 cut(s) 274
AhdI GACNNNNNGTC 1 cut(s) 142
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 3 cut(s) 30, 610, 853
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 3 cut(s) 355, 460, 470
AlwI GGATC 2 cut(s) 480, 928
AoxI GGCC 1 cut(s) 957
ApeKI GCWGC 4 cut(s) 392, 629, 632, 635
ApoI RAATTY 2 cut(s) 293, 444
AsiGI ACCGGT 2 cut(s) 243, 762
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 4 cut(s) 28, 608, 957, 984
AsuHPI GGTGA 5 cut(s) 68, 83, 134, 313, 899
AsuII TTCGAA 1 cut(s) 845
AvaII GGWCC 3 cut(s) 28, 608, 984
BaeGI GKGCMC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 968
BbvI GCAGC 4 cut(s) 379, 616, 619, 622
BccI CCATC 3 cut(s) 124, 670, 976
BcgI CGANNNNNNTGC 2 cut(s) 825, 859
BciT130I CCWGG 3 cut(s) 32, 612, 855
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 355, 460, 470
BfaI CTAG 2 cut(s) 795, 884
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 5 cut(s) 393, 630, 633, 636, 960
BlsI GCNGC 5 cut(s) 394, 631, 634, 637, 961
Bme1390I CCNGG 3 cut(s) 32, 612, 855
Bme18I GGWCC 3 cut(s) 28, 608, 984
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 4 cut(s) 28, 608, 957, 984
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 3 cut(s) 32, 612, 855
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 217, 850
BmuI ACTGGG 1 cut(s) 51
BpmI CTGGAG 2 cut(s) 633, 837
Bpu14I TTCGAA 1 cut(s) 845
BpuEI CTTGAG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 903
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 428, 910
BsaWI WCCGGW 2 cut(s) 243, 762
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 849, 879
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 2 cut(s) 243, 762
Bse1I ACTGG 2 cut(s) 46, 674
Bse3DI GCAATG 3 cut(s) 28, 502, 843
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 3 cut(s) 32, 612, 855
BseCI ATCGAT 1 cut(s) 932
BseDI CCNNGG 2 cut(s) 428, 910
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 3 cut(s) 28, 502, 843
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 46, 674
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 4 cut(s) 379, 616, 619, 622
BseYI CCCAGC 1 cut(s) 302
Bsh1236I CGCG 2 cut(s) 128, 962
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 959
BshTI ACCGGT 2 cut(s) 243, 762
BshVI ATCGAT 1 cut(s) 932
BsiEI CGRYCG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 244, 763
BslFI GGGAC 4 cut(s) 319, 863, 902, 997
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 3 cut(s) 355, 460, 470
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 4 cut(s) 319, 863, 902, 997
BsnI GGCC 1 cut(s) 959
Bso31I GGTCTC 1 cut(s) 355
Bsp119I TTCGAA 1 cut(s) 845
Bsp1286I GDGCHC 2 cut(s) 314, 968
Bsp143I GATC 5 cut(s) 160, 485, 929, 933, 951
BspACI CCGC 5 cut(s) 26, 134, 365, 624, 960
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 1 cut(s) 514
BspDI ATCGAT 1 cut(s) 932
BspFNI CGCG 2 cut(s) 128, 962
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 985
BspPI GGATC 2 cut(s) 480, 928
BspT104I TTCGAA 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 3 cut(s) 28, 502, 843
BsrFI RCCGGY 2 cut(s) 243, 762
BsrI ACTGG 2 cut(s) 46, 674
BssAI RCCGGY 2 cut(s) 243, 762
BssECI CCNNGG 2 cut(s) 428, 910
BssMI GATC 5 cut(s) 160, 485, 929, 933, 951
BssT1I CCWWGG 2 cut(s) 428, 910
Bst2UI CCWGG 3 cut(s) 32, 612, 855
Bst6I CTCTTC 1 cut(s) 429
BstBI TTCGAA 1 cut(s) 845
BstC8I GCNNGC 1 cut(s) 964
BstDEI CTNAG 1 cut(s) 522
BstEII GGTNACC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 2 cut(s) 128, 962
BstKTI GATC 5 cut(s) 163, 488, 932, 936, 954
BstMAI GTCTC 3 cut(s) 355, 460, 470
BstMBI GATC 5 cut(s) 160, 485, 929, 933, 951
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 3 cut(s) 86, 189, 635
BstNI CCWGG 3 cut(s) 32, 612, 855
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 30, 610, 853
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 314
BstUI CGCG 2 cut(s) 128, 962
BstV1I GCAGC 4 cut(s) 379, 616, 619, 622
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 2 cut(s) 375, 669
BstYI RGATCY 1 cut(s) 485
Bsu15I ATCGAT 1 cut(s) 932
BsuRI GGCC 1 cut(s) 959
BsuTUI ATCGAT 1 cut(s) 932
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 964
CciI TCATGA 1 cut(s) 562
Cfr10I RCCGGY 2 cut(s) 243, 762
Cfr13I GGNCC 4 cut(s) 28, 608, 957, 984
ClaI ATCGAT 1 cut(s) 932
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 103
CspAI ACCGGT 2 cut(s) 243, 762
CviAII CATG 4 cut(s) 142, 398, 563, 743
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 522
DpnI GATC 5 cut(s) 162, 487, 931, 935, 953
DpnII GATC 5 cut(s) 160, 485, 929, 933, 951
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 429
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 428, 910
Eco24I GRGCYC 1 cut(s) 968
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 3 cut(s) 28, 608, 984
Eco57I CTGAAG 2 cut(s) 405, 792
Eco91I GGTNACC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 30, 610, 853
EcoT14I CCWWGG 2 cut(s) 428, 910
EcoT38I GRGCYC 1 cut(s) 968
ErhI CCWWGG 2 cut(s) 428, 910
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 4 cut(s) 145, 401, 566, 746
FaqI GGGAC 4 cut(s) 319, 863, 902, 997
FatI CATG 4 cut(s) 141, 397, 562, 742
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 5 cut(s) 393, 630, 633, 636, 960
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 5 cut(s) 393, 630, 633, 636, 960
FspBI CTAG 2 cut(s) 795, 884
GluI GCNGC 5 cut(s) 393, 630, 633, 636, 960
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 633, 837
HaeIII GGCC 1 cut(s) 959
HapII CCGG 2 cut(s) 244, 763
HgaI GACGC 1 cut(s) 134
Hin1II CATG 4 cut(s) 145, 401, 566, 746
HinfI GANTC 4 cut(s) 478, 580, 800, 915
HpaII CCGG 2 cut(s) 244, 763
HphI GGTGA 5 cut(s) 68, 83, 134, 313, 899
Hpy188I TCNGA 5 cut(s) 360, 424, 898, 949, 973
Hpy188III TCNNGA 3 cut(s) 186, 563, 584
HpyAV CCTTC 3 cut(s) 521, 852, 974
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 230, 291, 507, 552, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 189, 635
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 145, 401, 566, 746
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 160, 485, 929, 933, 951
LmnI GCTCC 3 cut(s) 352, 647, 833
Lsp1109I GCAGC 4 cut(s) 379, 616, 619, 622
LweI GCATC 2 cut(s) 217, 850
MaeI CTAG 2 cut(s) 795, 884
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 5 cut(s) 71, 122, 319, 329, 921
MalI GATC 5 cut(s) 162, 487, 931, 935, 953
MboI GATC 5 cut(s) 160, 485, 929, 933, 951
MboII GAAGA 7 cut(s) 262, 411, 416, 446, 551, 795, 798
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 314, 968
MluCI AATT 8 cut(s) 293, 325, 373, 444, 547, 698, 755, 943
MlyI GAGTC 2 cut(s) 472, 924
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 9 cut(s) 88, 207, 343, 394, 492, 517, 608, 778, 891
MroXI GAANNNNTTC 1 cut(s) 266
MslI CAYNNNNRTG 2 cut(s) 765, 897
MspI CCGG 2 cut(s) 244, 763
MspR9I CCNGG 3 cut(s) 32, 612, 855
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 3 cut(s) 32, 612, 855
MvnI CGCG 2 cut(s) 128, 962
MwoI GCNNNNNNNGC 3 cut(s) 86, 189, 635
NdeII GATC 5 cut(s) 160, 485, 929, 933, 951
NlaIII CATG 4 cut(s) 145, 401, 566, 746
NlaIV GGNNCC 1 cut(s) 985
NmuCI GTSAC 4 cut(s) 71, 122, 319, 921
NspV TTCGAA 1 cut(s) 845
PagI TCATGA 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 580, 800
PfoI TCCNGGA 2 cut(s) 610, 853
PinAI ACCGGT 2 cut(s) 243, 762
PkrI GCNGC 5 cut(s) 394, 631, 634, 637, 961
PleI GAGTC 2 cut(s) 472, 923
PpsI GAGTC 2 cut(s) 472, 923
PpuMI RGGWCCY 1 cut(s) 608
Psp5II RGGWCCY 1 cut(s) 608
Psp6I CCWGG 3 cut(s) 30, 610, 853
PspEI GGTNACC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 3 cut(s) 30, 610, 853
PspN4I GGNNCC 1 cut(s) 985
PspPI GGNCC 4 cut(s) 28, 608, 957, 984
PspPPI RGGWCCY 1 cut(s) 608
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 2 cut(s) 765, 897
SatI GCNGC 5 cut(s) 393, 630, 633, 636, 960
Sau3AI GATC 5 cut(s) 160, 485, 929, 933, 951
Sau96I GGNCC 4 cut(s) 28, 608, 957, 984
SchI GAGTC 2 cut(s) 472, 924
ScrFI CCNGG 3 cut(s) 32, 612, 855
SduI GDGCHC 2 cut(s) 314, 968
SetI ASST 7 cut(s) 36, 199, 311, 357, 466, 610, 912
SfaNI GCATC 2 cut(s) 217, 850
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 845
SinI GGWCC 3 cut(s) 28, 608, 984
SmiMI CAYNNNNRTG 2 cut(s) 765, 897
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 8 cut(s) 293, 325, 373, 444, 547, 698, 755, 943
SsiI CCGC 5 cut(s) 26, 134, 365, 624, 960
SspMI CTAG 2 cut(s) 795, 884
StyD4I CCNGG 3 cut(s) 30, 610, 853
StyI CCWWGG 2 cut(s) 428, 910
TaiI ACGT 1 cut(s) 311
TaqI TCGA 4 cut(s) 248, 583, 845, 932
TasI AATT 8 cut(s) 293, 325, 373, 444, 547, 698, 755, 943
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 2 cut(s) 580, 800
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 4 cut(s) 71, 122, 319, 921
TseI GCWGC 4 cut(s) 392, 629, 632, 635
Tsp45I GTSAC 4 cut(s) 71, 122, 319, 921
TspDTI ATGAA 1 cut(s) 551
TspGWI ACGGA 2 cut(s) 107, 287
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 3 cut(s) 28, 608, 984
XapI RAATTY 2 cut(s) 293, 444
XcmI CCANNNNNNNNNTGG 2 cut(s) 38, 740
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 795, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.