pycom06g05990

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016591
Physical Location & Seq
Reverse (-)
9213880 .. 9215140
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGGGTCAGATTCGAAACCCCCGTATATTCCTAAAATTCACATTTCCCTCCTCAAACTCCGAAACCTTCGTCTTCGTCTTCTTCTTCTTCTTCTTTCCCACAACTACAACAACTACACAAAGCACAGAAAACCCATTAATTTCTCACAAGATGCTCAAAGCCGTAGGTCTCTTTGGCCGGAAGAAAAGCGGCAGCAGCGGCGGCAACCGCCATTTCAAAGACTTCTACGCCGACTGGTTCAACACACTCAATACCACGCTCCTCCCTTCGCTTCAGAACTCGATGTCCGAGTCCGACTCGTCCCTGACTCACCTCTCCACTCAGGTCGAAACCCTCCATCGCCACTTCCAATCCTACTACGACGCCCTCGACCTCGCCGCCGCAAACGACGTCGCTCAGCTCCTTTACCCCGACTGGCGAAACCCTCTCGAGAAGCCCTTCCTCTTCCTCGGCGACCTCCACCCCTACCTCTTCACCAACCTCCTCCGCTTTTTCCTCAAACAAAACGACTCCGAGGACGATGAAGAGTACGACAACGACAGCCTCACCGTTCAATTCGCCGACGCCCAAGACAGAGACAGGGACCAACTCGAAGTCCTCTTCGACCGCCCGTGGCACATCGCGACGGCGTGGAGGAGCCCGTCGTACGATCTGATGGGCAAGCTCGAGCAGGTCGAGCGCGGGCTGAGGCTGATGGTGCCGGCGCTGGTGGCGCGCGCGAGGGACGCTCAGGCCGGGTTCTTGGAGCACGTGGGGAGGAATTGGGATTATGGTAGCGGTCTGCAGAAGGCGGCGGTGGCGGAAGCTATGGCGGAGCAGAATGAGGAGATGGTGGGGGTTTTTGTGGATGCGAATCGGCTGAGAAGGAGCGTTCTTGTGGAGATCCTTGGCGCCACCAGCGTGTTTCAGGCGGCTCTGTTTCTTGAAGGGTTGGCCCAATTTCTTGTTGGGTTCAGAGACCCTGAGTTACTTGCTCAGTTTGATCTCTGCATAACGCCTCTCGGGAAGCAGAATCGCTTGGCGATTTGA

Protein Analysis

343

Amino Acids

38.99

Weight (kDa)

5.23

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 88 - 163 8.6e-18 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22600
fragaria_vesca FvH4_5g00261
malus_domestica MD06G1063700.v1.1
prunus_persica Prupe.5G075300_v2.0.a1
pyrus_communis pycom06g05990
rosa_chinensis RchiOBHm_Chr7g0202371
rosa_laevigata RLG00000003606
rosa_multiflora Rmu_sc0000266.1_g000010
rosa_rugosa Rorug07G0070100
rosa_samantha Rh7AG197600 Rh7BG198600 Rh7CG208700 Rh7DG204400
rosa_wichuraiana Rw7G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 2 cut(s) 697, 890
AccII CGCG 5 cut(s) 623, 681, 715, 717, 719
AclWI GGATC 1 cut(s) 877
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 257
AcvI CACGTG 1 cut(s) 751
AcyI GRCGYC 4 cut(s) 363, 390, 564, 891
AfaI GTAC 2 cut(s) 530, 647
AgsI TTSAA 4 cut(s) 217, 241, 554, 926
AleI CACNNNNGTG 1 cut(s) 899
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 400, 664, 806
AluI AGCT 3 cut(s) 400, 664, 806
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 3 cut(s) 173, 570, 951
AlwI GGATC 1 cut(s) 877
Ama87I CYCGRG 3 cut(s) 428, 665, 1001
AoxI GGCC 3 cut(s) 175, 732, 933
ApeKI GCWGC 2 cut(s) 192, 195
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AseI ATTAAT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 6 cut(s) 681, 706, 715, 717, 719, 893
AspS9I GGNCC 2 cut(s) 583, 934
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 302, 466, 538
AsuII TTCGAA 1 cut(s) 13
AvaI CYCGRG 3 cut(s) 428, 665, 1001
AvaII GGWCC 1 cut(s) 583
BanI GGYRCC 2 cut(s) 697, 890
BanII GRGCYC 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 751
BbsI GAAGAC 2 cut(s) 64, 70
Bbv12I GWGCWC 1 cut(s) 750
BbvCI CCTCAGC 1 cut(s) 686
BbvI GCAGC 2 cut(s) 204, 207
BccI CCATC 4 cut(s) 345, 649, 688, 823
BceAI ACGGC 2 cut(s) 146, 642
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 3 cut(s) 173, 570, 951
BfmI CTRYAG 1 cut(s) 782
BfoI RGCGCY 2 cut(s) 707, 894
BfuAI ACCTGC 1 cut(s) 661
BisI GCNGC 9 cut(s) 190, 193, 196, 199, 202, 378, 381, 792, 912
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 9 cut(s) 191, 194, 197, 200, 203, 379, 382, 793, 913
Bme1390I CCNGG 1 cut(s) 736
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 3 cut(s) 428, 665, 1001
BmgT120I GGNCC 2 cut(s) 583, 934
BmiI GGNNCC 4 cut(s) 584, 638, 699, 892
BmrFI CCNGG 1 cut(s) 736
BmsI GCATC 2 cut(s) 141, 838
BpiI GAAGAC 2 cut(s) 64, 70
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 712, 744
Bpu10I CCTNAGC 2 cut(s) 686, 729
Bpu1102I GCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 736
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 4 cut(s) 363, 390, 564, 891
BsaI GGTCTC 2 cut(s) 173, 951
BsaJI CCNNGG 4 cut(s) 448, 513, 611, 886
Bse118I RCCGGY 1 cut(s) 700
Bse1I ACTGG 2 cut(s) 239, 419
Bse8I GATNNNNATC 1 cut(s) 852
BseDI CCNNGG 4 cut(s) 448, 513, 611, 886
BseGI GGATG 1 cut(s) 853
BseJI GATNNNNATC 1 cut(s) 852
BseMII CTCAG 7 cut(s) 335, 410, 677, 743, 851, 954, 989
BseNI ACTGG 2 cut(s) 239, 419
BsePI GCGCGC 2 cut(s) 713, 715
BseRI GAGGAG 5 cut(s) 40, 251, 473, 649, 839
BseXI GCAGC 2 cut(s) 204, 207
Bsh1236I CGCG 5 cut(s) 623, 681, 715, 717, 719
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 3 cut(s) 177, 734, 935
BshNI GGYRCC 2 cut(s) 697, 890
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 3 cut(s) 428, 665, 1001
BsiSI CCGG 3 cut(s) 178, 701, 735
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 3 cut(s) 286, 596, 737
BsmAI GTCTC 3 cut(s) 173, 570, 951
BsmFI GGGAC 3 cut(s) 286, 596, 737
BsnI GGCC 3 cut(s) 177, 734, 935
Bso31I GGTCTC 2 cut(s) 173, 951
BsoBI CYCGRG 3 cut(s) 428, 665, 1001
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 641, 750
Bsp143I GATC 3 cut(s) 649, 882, 982
Bsp1720I GCTNAGC 1 cut(s) 396
Bsp68I TCGCGA 1 cut(s) 623
BspANI GGCC 3 cut(s) 177, 734, 935
BspCNI CTCAG 7 cut(s) 334, 409, 678, 742, 852, 955, 988
BspFNI CGCG 5 cut(s) 623, 681, 715, 717, 719
BspLI GGNNCC 4 cut(s) 584, 638, 699, 892
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 1 cut(s) 877
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 2 cut(s) 697, 890
BspTNI GGTCTC 2 cut(s) 173, 951
BsrFI RCCGGY 1 cut(s) 700
BsrI ACTGG 2 cut(s) 239, 419
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 4 cut(s) 448, 513, 611, 886
BssHII GCGCGC 2 cut(s) 713, 715
BssMI GATC 3 cut(s) 649, 882, 982
BssNI GRCGYC 4 cut(s) 363, 390, 564, 891
BssT1I CCWWGG 1 cut(s) 886
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 4 cut(s) 449, 476, 519, 605
BstACI GRCGYC 4 cut(s) 363, 390, 564, 891
BstBAI YACGTR 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 5 cut(s) 662, 683, 702, 715, 717
BstDEI CTNAG 7 cut(s) 321, 396, 686, 729, 860, 963, 975
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 5 cut(s) 623, 681, 715, 717, 719
BstH2I RGCGCY 2 cut(s) 707, 894
BstHHI GCGC 6 cut(s) 681, 706, 715, 717, 719, 893
BstKTI GATC 3 cut(s) 652, 885, 985
BstMAI GTCTC 3 cut(s) 173, 570, 951
BstMBI GATC 3 cut(s) 649, 882, 982
BstMCI CGRYCG 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 782
BstUI CGCG 5 cut(s) 623, 681, 715, 717, 719
BstV1I GCAGC 2 cut(s) 204, 207
BstV2I GAAGAC 2 cut(s) 64, 70
BstX2I RGATCY 1 cut(s) 882
BstYI RGATCY 1 cut(s) 882
BsuRI GGCC 3 cut(s) 177, 734, 935
BtgI CCRYGG 1 cut(s) 611
BtgZI GCGATG 2 cut(s) 323, 604
BtsCI GGATG 1 cut(s) 853
BtuMI TCGCGA 1 cut(s) 623
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 5 cut(s) 662, 683, 702, 715, 717
CfoI GCGC 6 cut(s) 681, 706, 715, 717, 719, 893
Cfr10I RCCGGY 1 cut(s) 700
Cfr13I GGNCC 2 cut(s) 583, 934
CseI GACGC 3 cut(s) 371, 572, 734
Csp6I GTAC 2 cut(s) 529, 646
CviQI GTAC 2 cut(s) 529, 646
DdeI CTNAG 7 cut(s) 321, 396, 686, 729, 860, 963, 975
DinI GGCGCC 1 cut(s) 892
DpnI GATC 3 cut(s) 651, 884, 984
DpnII GATC 3 cut(s) 649, 882, 982
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 449, 476, 519, 605
EarI CTCTTC 4 cut(s) 449, 476, 519, 605
EciI GGCGGA 2 cut(s) 815, 827
Eco130I CCWWGG 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 641
Eco31I GGTCTC 2 cut(s) 173, 951
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 257
Eco72I CACGTG 1 cut(s) 751
Eco88I CYCGRG 3 cut(s) 428, 665, 1001
EcoT14I CCWWGG 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 641
EgeI GGCGCC 1 cut(s) 892
EheI GGCGCC 1 cut(s) 892
ErhI CCWWGG 1 cut(s) 886
FaiI YATR 4 cut(s) 26, 771, 809, 992
FaqI GGGAC 3 cut(s) 286, 596, 737
FauI CCCGC 1 cut(s) 674
Fnu4HI GCNGC 9 cut(s) 190, 193, 196, 199, 202, 378, 381, 792, 912
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 9 cut(s) 190, 193, 196, 199, 202, 378, 381, 792, 912
GlaI GCGC 6 cut(s) 680, 705, 714, 716, 718, 892
GluI GCNGC 9 cut(s) 190, 193, 196, 199, 202, 378, 381, 792, 912
HaeII RGCGCY 2 cut(s) 707, 894
HaeIII GGCC 3 cut(s) 177, 734, 935
HapII CCGG 3 cut(s) 178, 701, 735
HgaI GACGC 3 cut(s) 371, 572, 734
HhaI GCGC 6 cut(s) 681, 706, 715, 717, 719, 893
Hin1I GRCGYC 4 cut(s) 363, 390, 564, 891
Hin6I GCGC 6 cut(s) 679, 704, 713, 715, 717, 891
HinP1I GCGC 6 cut(s) 679, 704, 713, 715, 717, 891
HinfI GANTC 7 cut(s) 10, 290, 296, 307, 509, 853, 1012
HpaII CCGG 3 cut(s) 178, 701, 735
HphI GGTGA 3 cut(s) 302, 466, 538
Hpy188I TCNGA 8 cut(s) 9, 61, 276, 289, 295, 514, 654, 956
Hpy188III TCNNGA 5 cut(s) 428, 430, 622, 923, 1003
Hpy99I CGWCG 6 cut(s) 365, 392, 395, 566, 628, 646
HpyAV CCTTC 6 cut(s) 76, 276, 448, 781, 858, 920
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 2 cut(s) 390, 750
HpyCH4V TGCA 2 cut(s) 784, 990
HpyF3I CTNAG 7 cut(s) 321, 396, 686, 729, 860, 963, 975
HpySE526I ACGT 2 cut(s) 390, 750
Hsp92I GRCGYC 4 cut(s) 363, 390, 564, 891
HspAI GCGC 6 cut(s) 679, 704, 713, 715, 717, 891
KasI GGCGCC 1 cut(s) 890
KroI GCCGGC 1 cut(s) 700
KroNI GCCGGC 1 cut(s) 702
Kzo9I GATC 3 cut(s) 649, 882, 982
LmnI GCTCC 6 cut(s) 264, 405, 636, 745, 814, 867
Lsp1109I GCAGC 2 cut(s) 204, 207
LweI GCATC 2 cut(s) 141, 838
MaeII ACGT 2 cut(s) 390, 750
MaeIII GTNAC 1 cut(s) 966
MalI GATC 3 cut(s) 651, 884, 984
MauBI CGCGCGCG 1 cut(s) 715
MboI GATC 3 cut(s) 649, 882, 982
MflI RGATCY 1 cut(s) 882
MhlI GDGCHC 2 cut(s) 641, 750
MluCI AATT 5 cut(s) 35, 138, 554, 760, 938
Mly113I GGCGCC 1 cut(s) 891
MlyI GAGTC 4 cut(s) 290, 299, 301, 503
MmeI TCCRAC 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 899
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 3 cut(s) 178, 701, 735
MspR9I CCNGG 1 cut(s) 736
MvnI CGCG 5 cut(s) 623, 681, 715, 717, 719
NaeI GCCGGC 1 cut(s) 702
NarI GGCGCC 1 cut(s) 891
NciI CCSGG 1 cut(s) 736
NdeII GATC 3 cut(s) 649, 882, 982
NgoMIV GCCGGC 1 cut(s) 700
NlaIV GGNNCC 4 cut(s) 584, 638, 699, 892
NmeAIII GCCGAG 1 cut(s) 429
NruI TCGCGA 1 cut(s) 623
NspV TTCGAA 1 cut(s) 13
OliI CACNNNNGTG 1 cut(s) 899
PaeR7I CTCGAG 2 cut(s) 428, 665
PauI GCGCGC 2 cut(s) 713, 715
PcsI WCGNNNNNNNCGW 3 cut(s) 19, 366, 672
PdiI GCCGGC 1 cut(s) 702
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 10, 853, 1012
Pfl23II CGTACG 1 cut(s) 645
PkrI GCNGC 9 cut(s) 191, 194, 197, 200, 203, 379, 382, 793, 913
PleI GAGTC 4 cut(s) 290, 298, 301, 503
PluTI GGCGCC 1 cut(s) 894
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
PpsI GAGTC 4 cut(s) 290, 298, 301, 503
Ppu21I YACGTR 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 137
PspCI CACGTG 1 cut(s) 751
PspLI CGTACG 1 cut(s) 645
PspN4I GGNNCC 4 cut(s) 584, 638, 699, 892
PspPI GGNCC 2 cut(s) 583, 934
PspXI VCTCGAGB 1 cut(s) 665
PstI CTGCAG 1 cut(s) 786
PsuI RGATCY 1 cut(s) 882
PteI GCGCGC 2 cut(s) 713, 715
RruI TCGCGA 1 cut(s) 623
RsaI GTAC 2 cut(s) 530, 647
RsaNI GTAC 2 cut(s) 529, 646
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 9 cut(s) 190, 193, 196, 199, 202, 378, 381, 792, 912
Sau3AI GATC 3 cut(s) 649, 882, 982
Sau96I GGNCC 2 cut(s) 583, 934
SchI GAGTC 4 cut(s) 290, 299, 301, 503
ScrFI CCNGG 1 cut(s) 736
SduI GDGCHC 2 cut(s) 641, 750
SfaNI GCATC 2 cut(s) 141, 838
SfcI CTRYAG 1 cut(s) 782
SfoI GGCGCC 1 cut(s) 892
Sfr274I CTCGAG 2 cut(s) 428, 665
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 583
SlaI CTCGAG 2 cut(s) 428, 665
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 2 cut(s) 428, 665
SmoI CTYRAG 2 cut(s) 428, 665
Sse9I AATT 5 cut(s) 35, 138, 554, 760, 938
SspDI GGCGCC 1 cut(s) 890
StyD4I CCNGG 1 cut(s) 734
StyI CCWWGG 1 cut(s) 886
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 2 cut(s) 393, 753
TaqI TCGA 9 cut(s) 13, 281, 327, 369, 429, 591, 603, 666, 675
TasI AATT 5 cut(s) 35, 138, 554, 760, 938
TauI GCSGC 7 cut(s) 192, 201, 204, 380, 383, 794, 914
TfiI GAWTC 3 cut(s) 10, 853, 1012
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 2 cut(s) 192, 195
TspDTI ATGAA 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 583
VspI ATTAAT 1 cut(s) 137
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XhoI CTCGAG 2 cut(s) 428, 665
XmnI GAANNNNTTC 1 cut(s) 437
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.