Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Forward (+)

10302859 .. 10303864

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAACACCCATTCCCTTCCCCCTCCTTTCCATTCGAGAGATTTCCACCTGCATCACCAGCAGCAGCATCCTCAGTTCCTCCACCAGCAACAGAATTCCGAAGACGAGCAAACAGGAAGCAGTGGCCTTAACAAAGGACAGAAGAGAGAGCGGGATATAGACGACAATGACAGCGGTGGCAATGGAGGCGAATTAGGCAAAGAGCTCAATGTCACCATGTCCGGTGGTGATGGATCAGAAATGACGAGAAGGCCCCGAGGGAGACCTGCCGGATCCAAGAACAAGCCTAAGCCCCCCATCATCATCACCCGGGACAGCGCCAATGCGCTCCGCTCCCACGTCATGGAGATTGCCGACGGGTGTGACATAGTGGAGAGTGTCGCCACCTTTGCTCGCAGGCGCCAGAGAGGCGTCTGCATTATGAGCGGGACCGGCACAGTCACGAATGTGACCCTCAGGCAGCCCGCCTCCCCAGGCTCCATAGTGACCTTGCACGGTCGATTCGAGATCTTGTCACTGGCGGGATCATTTCTTCCCCCACCAGCCCCGCCTGCCACGACTGGTTTGACCCGTACTGGGCTACCGGCCGCCCGGCATTCTAACCACCGGACCAGCCCTTGGATCAACAGGAGAGTTCATTTGCTTTGTCATCATCACCTACGCATGTTATACCAAGATGTGTCATCACCGACTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

233

Amino Acids

25.47

Weight (kDa)

9.91

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	111 - 179	1e-15	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	57
Acc36I	ACCTGC	2 cut(s)	57, 274
AccB1I	GGYRCC	1 cut(s)	399
AccB7I	CCANNNNNTGG	2 cut(s)	343, 618
AccBSI	CCGCTC	3 cut(s)	151, 333, 426
AciI	CCGC	8 cut(s)	151, 174, 331, 426, 465, 521, 548, 588
AclWI	GGATC	5 cut(s)	241, 267, 280, 532, 629
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	2 cut(s)	400, 411
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	343, 576, 618
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	446
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	5 cut(s)	241, 267, 280, 532, 629
Ama87I	CYCGRG	2 cut(s)	255, 309
AoxI	GGCC	3 cut(s)	124, 251, 585
ApeKI	GCWGC	3 cut(s)	61, 64, 460
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	3 cut(s)	320, 328, 402
AspS9I	GGNCC	3 cut(s)	252, 429, 609
AsuC2I	CCSGG	3 cut(s)	310, 311, 592
AsuHPI	GGTGA	6 cut(s)	47, 205, 239, 298, 647, 678
AvaI	CYCGRG	2 cut(s)	255, 309
AvaII	GGWCC	2 cut(s)	429, 609
AxyI	CCTNAGG	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	73, 76, 472
BccI	CCATC	2 cut(s)	224, 305
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	3 cut(s)	310, 311, 592
BcoDI	GTCTC	1 cut(s)	256
BfoI	RGCGCY	2 cut(s)	321, 403
BfuAI	ACCTGC	2 cut(s)	57, 274
BglI	GCCNNNNNGGC	1 cut(s)	408
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	4 cut(s)	62, 65, 461, 588
BlsI	GCNGC	4 cut(s)	63, 66, 462, 589
Bme1390I	CCNGG	4 cut(s)	310, 311, 474, 592
Bme18I	GGWCC	2 cut(s)	429, 609
BmeT110I	CYCGRG	2 cut(s)	255, 309
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	3 cut(s)	252, 429, 609
BmiI	GGNNCC	5 cut(s)	254, 274, 401, 430, 478
BmrFI	CCNGG	4 cut(s)	310, 311, 474, 592
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	61, 76
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	310, 311, 592
BsaHI	GRCGYC	2 cut(s)	400, 411
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	4 cut(s)	256, 309, 472, 617
BsaWI	WCCGGW	2 cut(s)	221, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 576, 618
Bse118I	RCCGGY	2 cut(s)	431, 583
Bse1I	ACTGG	3 cut(s)	522, 565, 580
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	256, 309, 472, 617
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	343, 576, 618
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	86, 469
BseNI	ACTGG	3 cut(s)	522, 565, 580
BseX3I	CGGCCG	1 cut(s)	585
BseXI	GCAGC	3 cut(s)	73, 76, 472
Bsh1285I	CGRYCG	2 cut(s)	499, 588
BshFI	GGCC	3 cut(s)	126, 253, 587
BshNI	GGYRCC	1 cut(s)	399
BsiEI	CGRYCG	2 cut(s)	499, 588
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	255, 309
BsiSI	CCGG	7 cut(s)	222, 270, 310, 432, 584, 592, 607
BslFI	GGGAC	2 cut(s)	326, 442
BslI	CCNNNNNNNGG	3 cut(s)	343, 576, 618
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	326, 442
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	126, 253, 587
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	255, 309
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	233, 272, 507, 524, 621
BspACI	CCGC	8 cut(s)	151, 174, 331, 426, 465, 521, 548, 588
BspANI	GGCC	3 cut(s)	126, 253, 587
BspCNI	CTCAG	2 cut(s)	85, 468
BspLI	GGNNCC	5 cut(s)	254, 274, 401, 430, 478
BspMI	ACCTGC	2 cut(s)	57, 274
BspPI	GGATC	5 cut(s)	241, 267, 280, 532, 629
BspT107I	GGYRCC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	3 cut(s)	151, 333, 426
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	2 cut(s)	431, 583
BsrI	ACTGG	3 cut(s)	522, 565, 580
BssAI	RCCGGY	2 cut(s)	431, 583
BssECI	CCNNGG	4 cut(s)	256, 309, 472, 617
BssMI	GATC	5 cut(s)	233, 272, 507, 524, 621
BssNI	GRCGYC	2 cut(s)	400, 411
BssT1I	CCWWGG	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	439, 497
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	2 cut(s)	400, 411
BstC8I	GCNNGC	4 cut(s)	394, 398, 465, 552
BstDEI	CTNAG	3 cut(s)	72, 288, 455
BstF5I	GGATG	1 cut(s)	67
BstH2I	RGCGCY	2 cut(s)	321, 403
BstHHI	GCGC	3 cut(s)	320, 328, 402
BstKTI	GATC	5 cut(s)	236, 275, 510, 527, 624
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	5 cut(s)	233, 272, 507, 524, 621
BstMCI	CGRYCG	2 cut(s)	499, 588
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 186, 195, 389, 408, 423, 432, 551
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	4 cut(s)	308, 309, 472, 590
BstV1I	GCAGC	3 cut(s)	73, 76, 472
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	272, 507
BstYI	RGATCY	2 cut(s)	272, 507
BstZI	CGGCCG	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	126, 253, 587
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 515
BveI	ACCTGC	2 cut(s)	57, 274
Cac8I	GCNNGC	4 cut(s)	394, 398, 465, 552
CfoI	GCGC	3 cut(s)	320, 328, 402
Cfr10I	RCCGGY	2 cut(s)	431, 583
Cfr13I	GGNCC	3 cut(s)	252, 429, 609
Cfr9I	CCCGGG	1 cut(s)	309
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	3 cut(s)	217, 343, 664
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	72, 288, 455
DinI	GGCGCC	1 cut(s)	401
DpnI	GATC	5 cut(s)	235, 274, 509, 526, 623
DpnII	GATC	5 cut(s)	233, 272, 507, 524, 621
EaeI	YGGCCR	1 cut(s)	585
EagI	CGGCCG	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	429, 609
Eco52I	CGGCCG	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	455
Eco88I	CYCGRG	2 cut(s)	255, 309
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	401
EheI	GGCGCC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	3 cut(s)	220, 346, 667
FaiI	YATR	9 cut(s)	158, 218, 344, 368, 422, 482, 665, 670, 695
FaqI	GGGAC	2 cut(s)	326, 442
FatI	CATG	3 cut(s)	216, 342, 663
FauI	CCCGC	5 cut(s)	144, 419, 472, 514, 555
Fnu4HI	GCNGC	4 cut(s)	62, 65, 461, 588
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	62, 65, 461, 588
GlaI	GCGC	3 cut(s)	319, 327, 401
GluI	GCNGC	4 cut(s)	62, 65, 461, 588
HaeII	RGCGCY	2 cut(s)	321, 403
HaeIII	GGCC	3 cut(s)	126, 253, 587
HapII	CCGG	7 cut(s)	222, 270, 310, 432, 584, 592, 607
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	3 cut(s)	320, 328, 402
Hin1I	GRCGYC	2 cut(s)	400, 411
Hin1II	CATG	3 cut(s)	220, 346, 667
Hin6I	GCGC	3 cut(s)	318, 326, 400
HinP1I	GCGC	3 cut(s)	318, 326, 400
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	7 cut(s)	222, 270, 310, 432, 584, 592, 607
HphI	GGTGA	6 cut(s)	47, 205, 239, 298, 647, 678
Hpy188I	TCNGA	2 cut(s)	100, 238
Hpy188III	TCNNGA	3 cut(s)	36, 442, 505
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	26, 243
HpyCH4III	ACNGT	2 cut(s)	439, 497
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	52, 417, 493
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 186, 195, 389, 408, 423, 432, 551
HpyF3I	CTNAG	3 cut(s)	72, 288, 455
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	400, 411
Hsp92II	CATG	3 cut(s)	220, 346, 667
HspAI	GCGC	3 cut(s)	318, 326, 400
KasI	GGCGCC	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	233, 272, 507, 524, 621
LmnI	GCTCC	3 cut(s)	333, 338, 482
Lsp1109I	GCAGC	3 cut(s)	73, 76, 472
LweI	GCATC	2 cut(s)	61, 76
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	6 cut(s)	211, 362, 439, 448, 484, 513
MalI	GATC	5 cut(s)	235, 274, 509, 526, 623
MbiI	CCGCTC	3 cut(s)	151, 333, 426
MboI	GATC	5 cut(s)	233, 272, 507, 524, 621
MboII	GAAGA	3 cut(s)	113, 154, 524
MflI	RGATCY	2 cut(s)	272, 507
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	94, 191
Mly113I	GGCGCC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	33, 81, 89, 179, 251, 401, 464, 478
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	7 cut(s)	222, 270, 310, 432, 584, 592, 607
MspR9I	CCNGG	4 cut(s)	310, 311, 474, 592
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	8 cut(s)	58, 186, 195, 389, 408, 423, 432, 551
NarI	GGCGCC	1 cut(s)	400
NciI	CCSGG	3 cut(s)	310, 311, 592
NdeII	GATC	5 cut(s)	233, 272, 507, 524, 621
NlaIII	CATG	3 cut(s)	220, 346, 667
NlaIV	GGNNCC	5 cut(s)	254, 274, 401, 430, 478
NmuCI	GTSAC	6 cut(s)	211, 362, 439, 448, 484, 513
NspI	RCATGY	1 cut(s)	667
OliI	CACNNNNGTG	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	501
PflMI	CCANNNNNTGG	2 cut(s)	343, 618
PkrI	GCNGC	4 cut(s)	63, 66, 462, 589
PluTI	GGCGCC	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	5 cut(s)	254, 274, 401, 430, 478
PspPI	GGNCC	3 cut(s)	252, 429, 609
PsuI	RGATCY	2 cut(s)	272, 507
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	62, 65, 461, 588
Sau3AI	GATC	5 cut(s)	233, 272, 507, 524, 621
Sau96I	GGNCC	3 cut(s)	252, 429, 609
ScrFI	CCNGG	4 cut(s)	310, 311, 474, 592
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	7 cut(s)	51, 207, 268, 342, 389, 491, 660
SfaNI	GCATC	2 cut(s)	61, 76
SfoI	GGCGCC	1 cut(s)	401
SinI	GGWCC	2 cut(s)	429, 609
SmaI	CCCGGG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	94, 191
SsiI	CCGC	8 cut(s)	151, 174, 331, 426, 465, 521, 548, 588
SspDI	GGCGCC	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	4 cut(s)	308, 309, 472, 590
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	2 cut(s)	439, 497
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	35, 499, 504
TasI	AATT	2 cut(s)	94, 191
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	127, 522
TseFI	GTSAC	6 cut(s)	211, 362, 439, 448, 484, 513
TseI	GCWGC	3 cut(s)	61, 64, 460
Tsp45I	GTSAC	6 cut(s)	211, 362, 439, 448, 484, 513
TspDTI	ATGAA	2 cut(s)	17, 626
TspMI	CCCGGG	1 cut(s)	309
TspRI	CASTG	2 cut(s)	127, 522
Van91I	CCANNNNNTGG	2 cut(s)	343, 618
VpaK11BI	GGWCC	2 cut(s)	429, 609
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	667
XmaI	CCCGGG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.