pycom06g07560

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007441
Physical Location & Seq
Reverse (-)
12315820 .. 12319013
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGGAATGGGAACAAGCACATTTATCATCAGATGGGTCAACTTTCTCACCATGCTCTTAGCAATTGTTGTCGTAGTTTTCGGGGTGTGGATGAGTACTCATCACGATGGCTGTCGGAGATCCCTCACGCTCCCCGTTATAGGCATTGGTGCAGTCATCTTTTTAATATCAATAATCGGCTTCTTGGGTGCAATGAAAAATAGCTCCATACTCTTGTGGATTTATCTGATTCTGTTGTGCTTCATACTGATGGGAATCCTGGTGTTCACGGTATTAGCGTTCATTGTCACAAATAATGGCTCTGGTCATAGCGTGGTTGGCTTGAGGTACAAGGAGTATCAACTCCATGATTACAGTCCGTGGTTTCTAAAACAATTGAACAATACGCAAAACTGGAAGCACTTAAAGAGTTGTCTTGTGAAATCTAATGACTGCAACGACCTACCAAAAAAGTATAAGACTCTGAAGCAATACAAATTGGCAAAGCTAACCCCTATGGAGGCTGGTTGTTGTCGACCACCATCTGAATGCGGTTATCCTGCTGTTAATGCGTCATACTATGACATGAGCTTCCATCCAGTTAGTTCAAACAAGGACTGCAAACTTTACAAAAATGCCCGGGACACCAAGTGTTACAATTGTGATTCCTGCAAGGCTGGAGTTGCACAATACATGAAAACTGAGTGGCGACTGGTTGCGATCTTTAATGTTGCTCTGTTTGTTGTTTTGTCTATGATATATTTCGTGGGATGCTGTGCAAGACGAAATGCTGCAAGAGTCCGTTCCAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

265

Amino Acids

29.88

Weight (kDa)

9.47

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 253 9e-35 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 514
AciI CCGC 1 cut(s) 531
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 2 cut(s) 97, 329
AfiI CCNNNNNNNGG 2 cut(s) 140, 499
AgsI TTSAA 2 cut(s) 379, 588
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 204, 487, 570
AluI AGCT 3 cut(s) 204, 487, 570
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 770
AsuC2I CCSGG 2 cut(s) 619, 620
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 618
BbvI GCAGC 1 cut(s) 757
BccI CCATC 5 cut(s) 27, 101, 244, 529, 582
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 2 cut(s) 619, 620
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 3 cut(s) 260, 619, 620
BmeT110I CYCGRG 1 cut(s) 618
BmrFI CCNGG 3 cut(s) 260, 619, 620
BmsI GCATC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 343
BpuMI CCSGG 2 cut(s) 619, 620
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 359, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 499
Bse1I ACTGG 3 cut(s) 398, 578, 696
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 359, 618
BseGI GGATG 3 cut(s) 96, 574, 755
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 140, 499
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 398, 578, 696
BseXI GCAGC 1 cut(s) 757
BsgI GTGCAG 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 1 cut(s) 619
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 140, 499
BsmFI GGGAC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 618
Bsp143I GATC 2 cut(s) 119, 699
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 3 cut(s) 398, 578, 696
BssECI CCNNGG 2 cut(s) 359, 618
BssMI GATC 2 cut(s) 119, 699
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 271, 356
BstDEI CTNAG 2 cut(s) 58, 681
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 3 cut(s) 96, 574, 755
BstKTI GATC 2 cut(s) 122, 702
BstMBI GATC 2 cut(s) 119, 699
BstMWI GCNNNNNNNGC 3 cut(s) 318, 548, 662
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 258, 617, 618
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 3 cut(s) 96, 574, 755
Cfr9I CCCGGG 1 cut(s) 618
CseI GACGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 96, 328
CviAII CATG 4 cut(s) 52, 347, 565, 673
CviJI RGCY 9 cut(s) 111, 180, 204, 300, 321, 487, 503, 570, 656
CviKI_1 RGCY 9 cut(s) 111, 180, 204, 300, 321, 487, 503, 570, 656
CviQI GTAC 2 cut(s) 96, 328
DdeI CTNAG 2 cut(s) 58, 681
DpnI GATC 2 cut(s) 121, 701
DpnII GATC 2 cut(s) 119, 699
DraIII CACNNNGTG 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 55, 350, 568, 676
FaqI GGGAC 1 cut(s) 635
FatI CATG 4 cut(s) 51, 346, 564, 672
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 3 cut(s) 103, 561, 762
Fsp4HI GCNGC 1 cut(s) 771
GluI GCNGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 678
HapII CCGG 1 cut(s) 619
HgaI GACGC 1 cut(s) 540
Hin1II CATG 4 cut(s) 55, 350, 568, 676
HincII GTYRAC 2 cut(s) 40, 515
HindII GTYRAC 2 cut(s) 40, 515
HinfI GANTC 5 cut(s) 229, 255, 460, 644, 777
HpaII CCGG 1 cut(s) 619
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 40, 267, 515
Hpy188I TCNGA 5 cut(s) 32, 117, 228, 465, 526
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 3 cut(s) 40, 267, 515
HpyCH4III ACNGT 2 cut(s) 271, 356
HpyCH4V TGCA 8 cut(s) 152, 191, 435, 600, 651, 665, 758, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 548, 662
HpyF3I CTNAG 2 cut(s) 58, 681
Hsp92II CATG 4 cut(s) 55, 350, 568, 676
Kzo9I GATC 2 cut(s) 119, 699
LmnI GCTCC 2 cut(s) 135, 209
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 740
MaeIII GTNAC 2 cut(s) 286, 632
MalI GATC 2 cut(s) 121, 701
MboI GATC 2 cut(s) 119, 699
MfeI CAATTG 3 cut(s) 63, 374, 637
MflI RGATCY 1 cut(s) 119
MluCI AATT 5 cut(s) 63, 374, 476, 637, 790
MlyI GAGTC 2 cut(s) 454, 786
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 134, 318, 493
MseI TTAA 5 cut(s) 164, 404, 546, 705, 793
MslI CAYNNNNRTG 3 cut(s) 105, 248, 526
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 3 cut(s) 260, 619, 620
MunI CAATTG 3 cut(s) 63, 374, 637
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 318, 548, 662
NciI CCSGG 2 cut(s) 619, 620
NdeII GATC 2 cut(s) 119, 699
NlaIII CATG 4 cut(s) 55, 350, 568, 676
NmuCI GTSAC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 229, 255, 644
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 2 cut(s) 454, 785
PpsI GAGTC 2 cut(s) 454, 785
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 97, 329
RsaNI GTAC 2 cut(s) 96, 328
RseI CAYNNNNRTG 3 cut(s) 105, 248, 526
SalI GTCGAC 1 cut(s) 513
SaqAI TTAA 5 cut(s) 164, 404, 546, 705, 793
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 2 cut(s) 119, 699
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 2 cut(s) 454, 786
ScrFI CCNGG 3 cut(s) 260, 619, 620
SetI ASST 5 cut(s) 206, 329, 444, 489, 572
SfaNI GCATC 1 cut(s) 740
SmaI CCCGGG 1 cut(s) 620
SmiMI CAYNNNNRTG 3 cut(s) 105, 248, 526
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 5 cut(s) 63, 374, 476, 637, 790
SsiI CCGC 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 258, 617, 618
TaaI ACNGT 2 cut(s) 271, 356
TaqI TCGA 1 cut(s) 514
TasI AATT 5 cut(s) 63, 374, 476, 637, 790
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 3 cut(s) 229, 255, 644
Tru1I TTAA 5 cut(s) 164, 404, 546, 705, 793
Tru9I TTAA 5 cut(s) 164, 404, 546, 705, 793
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 209, 232, 271, 689
TspGWI ACGGA 2 cut(s) 348, 770
TspMI CCCGGG 1 cut(s) 618
XmaI CCCGGG 1 cut(s) 618
XmiI GTMKAC 1 cut(s) 514
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.