pycom06g09320

Arm repeat protein interacting with

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
14579924 .. 14581137
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGATGAGGTTGAAAAAGCCGGGATGTGCCATTTGCTTCCAGTACATTCTTCCAACCCAGTTCCAGTTCTCTCTCGCCAGTTTCCAAGAAGCACAGCGTAGATGGTATGCTCACAGAACTTGCCTGCTTGCTTCTTCAGATACCTTCCGTGCAATGTTTGATGGTGATCAGTATTTTTTGTCTTCTGGGTTTTGGCTAGCATCATGGAGTTTGTCTACGATGTCGCAGCGGATGAAGGCGATGGTCGAGTGA

Protein Analysis

84

Amino Acids

9.74

Weight (kDa)

9.3

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 96, 155, 235
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 209
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 165
Bse1I ACTGG 4 cut(s) 40, 58, 64, 78
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 165
BseGI GGATG 2 cut(s) 29, 237
BseJI GATNNNNATC 1 cut(s) 165
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 4 cut(s) 40, 58, 64, 78
BseXI GCAGC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 4 cut(s) 40, 58, 64, 78
BssMI GATC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 125, 129, 198
BstF5I GGATG 2 cut(s) 29, 237
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 29, 237
Cac8I GCNNGC 3 cut(s) 125, 129, 198
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 204
CviJI RGCY 2 cut(s) 19, 196
CviKI_1 RGCY 2 cut(s) 19, 196
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 1 cut(s) 207
FaiI YATR 2 cut(s) 108, 205
FatI CATG 1 cut(s) 203
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 36, 244
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 227
HapII CCGG 1 cut(s) 20
Hin1II CATG 1 cut(s) 207
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 154, 229
HpyCH4V TGCA 1 cut(s) 152
Hsp92II CATG 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 33, 53, 71, 77, 91, 137, 171
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 197
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 41, 126, 174
MmeI TCCRAC 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 166
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 228
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 21
SetI ASST 2 cut(s) 11, 146
SfaNI GCATC 1 cut(s) 209
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 246
TatI WGTACW 1 cut(s) 42
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.