Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010810

Physical Location & Seq

Genomic Coordinates Forward (+)

15072216 .. 15075033

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAAGCTGAAATGGATGCACTGGTTTAATCACAAGCACAAGCATTTGGTGGTGAAGTTTGGAGTTGCAATCCTTCTGATGGGTCTAGCTTTTCGTCTCTTTCTCTCCACCTCCAATGAGTTTTCGCCTAAAACAGATGCCCCTTTTCCTGAGGAAACTGAGGATTTAGAACAGCCAATTTCTGTGGAATTTCCACAAAACGAAGATCAGGATGAGATGCCTTTTCCCAGAAAAGAAGCCCAGAAAGAAACCCATTTTCCCGAGAATACTGTGGATTCAGAGCAGCCAATTTCGAGGCAAGTTCCAGGAGATGGAGATCAGGACCAGATACCTCCACCAAATGGAAAGTGCGATCTTTTCTCTGGGGATTGGATTCCGAGTACTTCGGGTTCAGCTTACAATGAGAGCTGCCCCACAATTGAAAATCCTCAGAATTGCATAAGAAATGGGCGGCCTGATACAGGGTTTCTATACTGGAAGTGGAAGCCACGATATTGTGAAATCCCAAAATTTGATCCAGGGAGATTTCTTGAAATGATGAGGAACAAAGCATGGGCGTTGATTGGTGATTCGATATCTCGCAACCATGTCCAGTCGCTGCTGTGCATGCTCTCCAAGGTTGAACGAGCCGTTCAAGTGTACCATGACAAGGATTACAGGTCCAGAAGATGGCACTTCCCCTCTTACAATTTTAGTGTCTCAGTTATTTGGTCCCCATTCCTTGTCCAAGCTGCTATTTTTGAAGACTTTGATGGTGTGGCATCATCTGAAGTTGAGCTGCATCTTGACAAGCTTGATAAGAAGTGGGTGGATCAGTACCACGGTTGGGACTACATGATAATTTCAACAGGGAAATGGTTTCTCAAAAGTGCTATCTACTACGAGGGCAATGAAGTTCTGGGATGCCATTACTGTCCTAAAAGGAACCTGACAGAGTTGGGATTTGATTTCTCTTATCGCAAAGCCCTGAGATTTGTGATGAACTTTATAGTAAAGTCAGATTACAAGGGCACGATATTTTTCAGAACATCCACTCCTGATCATTTTGAGGGCGGGGAGTGGAATACTGGGGGAAACTGCAAGAAAACGGCCCCAGCTAAAGAAGGTGAGGTTGAAGTGAAGGAGGTAAATAAGATTCTGCGTGGCATTGAACTAGAAGAATTTCCGAAGGCAGCTGCAGAAGCTTCTAAACATGGGGTGAATCTCAAACTCCTTGACCTATTCCAACTTTCTTTGTTGAGACCTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

418

Amino Acids

48.24

Weight (kDa)

5.95

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	116 - 167	1.7e-18	PMR5 N terminal Domain
PC-Esterase	PF13839	168 - 417	1.2e-69	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11090 AT4G23790
fragaria_vesca	FvH4_5g04110 FvH4_5g04110
malus_domestica	MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica	Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis	pycom06g09750
rosa_chinensis	RchiOBHm_Chr7g0195391
rosa_laevigata	RLG00000004124
rosa_multiflora	Rmu_sc0007366.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260520
rosa_rugosa	Rorug07G0023000.1
rosa_samantha	Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana	Rw7G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	311, 341, 669
AciI	CCGC	2 cut(s)	451, 1053
AclWI	GGATC	2 cut(s)	509, 819
AcsI	RAATTY	3 cut(s)	188, 509, 1160
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	3 cut(s)	382, 641, 818
AfiI	CCNNNNNNNGG	7 cut(s)	79, 311, 341, 461, 649, 669, 826
AgsI	TTSAA	8 cut(s)	422, 533, 623, 635, 743, 846, 1115, 1151
AjnI	CCWGG	2 cut(s)	304, 517
AloI	GAACNNNNNNTCC	2 cut(s)	1018, 1050
Alw26I	GTCTC	3 cut(s)	101, 703, 1234
AlwI	GGATC	2 cut(s)	509, 819
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	452, 1089
ApeKI	GCWGC	7 cut(s)	283, 408, 598, 731, 778, 1172, 1175
ApoI	RAATTY	3 cut(s)	188, 509, 1160
Asp700I	GAANNNNTTC	1 cut(s)	1161
AspS9I	GGNCC	4 cut(s)	322, 660, 711, 1090
AsuHPI	GGTGA	4 cut(s)	64, 578, 1118, 1210
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	322, 660, 711
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	1013
BbsI	GAAGAC	1 cut(s)	750
BbvI	GCAGC	7 cut(s)	295, 395, 585, 718, 765, 1162, 1184
BccI	CCATC	4 cut(s)	73, 305, 663, 746
BceAI	ACGGC	2 cut(s)	614, 1104
BciT130I	CCWGG	2 cut(s)	306, 519
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	3 cut(s)	101, 703, 1234
BfaI	CTAG	2 cut(s)	86, 1154
BfmI	CTRYAG	1 cut(s)	1176
BisI	GCNGC	8 cut(s)	284, 409, 452, 599, 732, 779, 1173, 1176
BlsI	GCNGC	8 cut(s)	285, 410, 453, 600, 733, 780, 1174, 1177
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	306, 519
Bme18I	GGWCC	3 cut(s)	322, 660, 711
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	322, 660, 711, 1090
BmiI	GGNNCC	3 cut(s)	713, 926, 1092
BmrFI	CCNGG	2 cut(s)	306, 519
BmrI	ACTGGG	1 cut(s)	1077
BmsI	GCATC	7 cut(s)	6, 127, 207, 770, 790, 893, 1237
BmuI	ACTGGG	1 cut(s)	1077
BpiI	GAAGAC	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	1234
BsaJI	CCNNGG	3 cut(s)	518, 615, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	7 cut(s)	79, 311, 341, 461, 649, 669, 826
Bse1I	ACTGG	4 cut(s)	26, 479, 592, 1072
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	895
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	306, 519
BseDI	CCNNGG	3 cut(s)	518, 615, 820
BseGI	GGATG	4 cut(s)	21, 217, 908, 1028
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	7 cut(s)	79, 311, 341, 461, 649, 669, 826
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	5 cut(s)	141, 150, 443, 714, 959
BseNI	ACTGG	4 cut(s)	26, 479, 592, 1072
BseSI	GKGCMC	1 cut(s)	1013
BseXI	GCAGC	7 cut(s)	295, 395, 585, 718, 765, 1162, 1184
BseYI	CCCAGC	1 cut(s)	1093
BshFI	GGCC	2 cut(s)	454, 1091
BsiHKCI	CYCGRG	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	697, 842
BslI	CCNNNNNNNGG	7 cut(s)	79, 311, 341, 461, 649, 669, 826
BsmAI	GTCTC	3 cut(s)	101, 703, 1234
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	697, 842
BsnI	GGCC	2 cut(s)	454, 1091
Bso31I	GGTCTC	1 cut(s)	1234
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	1013
Bsp143I	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
BspACI	CCGC	2 cut(s)	451, 1053
BspANI	GGCC	2 cut(s)	454, 1091
BspCNI	CTCAG	5 cut(s)	142, 151, 442, 713, 960
BspLI	GGNNCC	3 cut(s)	713, 926, 1092
BspMAI	CTGCAG	1 cut(s)	1180
BspPI	GGATC	2 cut(s)	509, 819
BspTNI	GGTCTC	1 cut(s)	1234
BsrDI	GCAATG	1 cut(s)	895
BsrI	ACTGG	4 cut(s)	26, 479, 592, 1072
BssECI	CCNNGG	3 cut(s)	518, 615, 820
BssMI	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	306, 519
Bst4CI	ACNGT	3 cut(s)	271, 824, 914
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	5 cut(s)	150, 159, 429, 700, 968
BstDSI	CCRYGG	1 cut(s)	820
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	21, 217, 908, 1028
BstKTI	GATC	6 cut(s)	208, 319, 355, 517, 814, 1042
BstMAI	GTCTC	3 cut(s)	101, 703, 1234
BstMBI	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 1181
BstNI	CCWGG	2 cut(s)	306, 519
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	304, 517
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	1 cut(s)	1013
BstV1I	GCAGC	7 cut(s)	295, 395, 585, 718, 765, 1162, 1184
BstV2I	GAAGAC	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	454, 1091
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	4 cut(s)	21, 217, 908, 1028
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	608
CaiI	CAGNNNCTG	1 cut(s)	598
Cfr13I	GGNCC	4 cut(s)	322, 660, 711, 1090
Csp6I	GTAC	3 cut(s)	381, 640, 817
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	6 cut(s)	552, 587, 607, 644, 835, 1193
CviQI	GTAC	3 cut(s)	381, 640, 817
DdeI	CTNAG	5 cut(s)	150, 159, 429, 700, 968
DpnI	GATC	6 cut(s)	207, 318, 354, 516, 813, 1041
DpnII	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
Eco130I	CCWWGG	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	1234
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	3 cut(s)	322, 660, 711
Eco57I	CTGAAG	1 cut(s)	789
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	304, 517
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	6 cut(s)	555, 590, 610, 647, 838, 1196
FaiI	YATR	9 cut(s)	440, 472, 553, 588, 608, 645, 836, 989, 1194
FaqI	GGGAC	2 cut(s)	697, 842
FatI	CATG	6 cut(s)	551, 586, 606, 643, 834, 1192
FauI	CCCGC	1 cut(s)	1046
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	8 cut(s)	284, 409, 452, 599, 732, 779, 1173, 1176
FokI	GGATG	4 cut(s)	28, 224, 915, 1015
Fsp4HI	GCNGC	8 cut(s)	284, 409, 452, 599, 732, 779, 1173, 1176
FspBI	CTAG	2 cut(s)	86, 1154
GluI	GCNGC	8 cut(s)	284, 409, 452, 599, 732, 779, 1173, 1176
GsaI	CCCAGC	1 cut(s)	1097
HaeIII	GGCC	2 cut(s)	454, 1091
Hin1II	CATG	6 cut(s)	555, 590, 610, 647, 838, 1196
HindIII	AAGCTT	2 cut(s)	791, 1182
HinfI	GANTC	5 cut(s)	275, 373, 569, 1135, 1201
HphI	GGTGA	4 cut(s)	64, 578, 1118, 1210
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	8 cut(s)	78, 280, 378, 432, 769, 1000, 1025, 1167
Hpy188III	TCNNGA	8 cut(s)	149, 209, 260, 320, 530, 663, 785, 1037
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	4 cut(s)	83, 1097, 1114, 1162
HpyCH4III	ACNGT	3 cut(s)	271, 824, 914
HpyCH4V	TGCA	7 cut(s)	19, 68, 438, 606, 781, 1080, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 1181
HpyF3I	CTNAG	5 cut(s)	150, 159, 429, 700, 968
Hsp92II	CATG	6 cut(s)	555, 590, 610, 647, 838, 1196
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
Lsp1109I	GCAGC	7 cut(s)	295, 395, 585, 718, 765, 1162, 1184
LweI	GCATC	7 cut(s)	6, 127, 207, 770, 790, 893, 1237
MaeI	CTAG	2 cut(s)	86, 1154
MalI	GATC	6 cut(s)	207, 318, 354, 516, 813, 1041
MboI	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
MboII	GAAGA	4 cut(s)	215, 678, 755, 1169
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	1013
MluCI	AATT	9 cut(s)	177, 188, 288, 417, 433, 509, 688, 840, 1160
MmeI	TCCRAC	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	1161
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	1175
MspR9I	CCNGG	2 cut(s)	306, 519
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	306, 519
MwoI	GCNNNNNNNGC	2 cut(s)	607, 1181
NdeII	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
NlaIII	CATG	6 cut(s)	555, 590, 610, 647, 838, 1196
NlaIV	GGNNCC	3 cut(s)	713, 926, 1092
NspI	RCATGY	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	1161
PfeI	GAWTC	5 cut(s)	275, 373, 569, 1135, 1201
PflMI	CCANNNNNTGG	3 cut(s)	311, 341, 669
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	8 cut(s)	285, 410, 453, 600, 733, 780, 1174, 1177
Psp6I	CCWGG	2 cut(s)	304, 517
PspFI	CCCAGC	1 cut(s)	1093
PspGI	CCWGG	2 cut(s)	304, 517
PspN4I	GGNNCC	3 cut(s)	713, 926, 1092
PspPI	GGNCC	4 cut(s)	322, 660, 711, 1090
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PstI	CTGCAG	1 cut(s)	1180
PstNI	CAGNNNCTG	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	3 cut(s)	382, 641, 818
RsaNI	GTAC	3 cut(s)	381, 640, 817
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	8 cut(s)	284, 409, 452, 599, 732, 779, 1173, 1176
Sau3AI	GATC	6 cut(s)	205, 316, 352, 514, 811, 1039
Sau96I	GGNCC	4 cut(s)	322, 660, 711, 1090
ScaI	AGTACT	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	306, 519
SduI	GDGCHC	1 cut(s)	1013
SfaNI	GCATC	7 cut(s)	6, 127, 207, 770, 790, 893, 1237
SfcI	CTRYAG	1 cut(s)	1176
SinI	GGWCC	3 cut(s)	322, 660, 711
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	9 cut(s)	177, 188, 288, 417, 433, 509, 688, 840, 1160
SsiI	CCGC	2 cut(s)	451, 1053
SspMI	CTAG	2 cut(s)	86, 1154
StyD4I	CCNGG	2 cut(s)	304, 517
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	271, 824, 914
TaqI	TCGA	2 cut(s)	293, 572
TasI	AATT	9 cut(s)	177, 188, 288, 417, 433, 509, 688, 840, 1160
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	5 cut(s)	275, 373, 569, 1135, 1201
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	7 cut(s)	283, 408, 598, 731, 778, 1172, 1175
TspDTI	ATGAA	3 cut(s)	17, 906, 995
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	3 cut(s)	311, 341, 669
VpaK11BI	GGWCC	3 cut(s)	322, 660, 711
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	3 cut(s)	188, 509, 1160
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	1161
XspI	CTAG	2 cut(s)	86, 1154
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.