pycom06g09760

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014151
Physical Location & Seq
Forward (+)
15076830 .. 15079260
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGGCTGACACTGTATTCGCCGAAATACCCAACAGGAAGCCAAGGGCCAGCCGAAGGGCACTCAAGGACAAAAACCCATCTGGAAATGCAGCCAATATCCTCTCAGGAAAGGTCTCGGACGCCGCTCCGAGCCCGATCCAAACACCATCGGACTCCAACCCAATGAAGGAGAACCACGAGAGCCTCTCTCAGACTCGCACATCCCCCAAGAAGTCGGGCAAAGCTGCGGCTTCTAAGAAACAGGCCAATCAGAAGAAGACCCAACCGTCGTCATTCGAGAAAGAACTCGAAGAAATGCAAGAGAAGCTGCAAGCGATGAAGCTCGAAAAGGAGAAAACCGAGGAGCTCCTGAAGGAGAAGGATGAGATCTTGAAGACTAAGGAGGAAGATCTTGCTATGAAGGGCCGAGAGCAAGACAAGCTTCAGATGGAGTTGAAGAAGCTGCAGAAGCTCAAGGAGTTCAAACCCACCATGGCATTCCCAATTGCTCAACCAATGCAAGACAAGAAAAAGAAGGGTTGCCCTGAGAAGAAAAGGCCAGCTCCTGCTTACATCTTATGGTGCAAAGATCAATGGGCTGAGATCAAGAAGGTGAACCCTGAAGCAGATTTTAAGGAAGTCTCGAACATTTTGGGGGCCAAGTGGAAGAACGTCAGTGCTGAAGAGAAGAAGCCTTACGAAGAGAGGTACCAGGCCGAGAAGGAAGCTTACCTGAAAGTGACTACGAAAGAGAAGCGCGAGGTGGAAGCAATGCATCTCTTGGAGGAGGAGAACAAGCAGAAGACAGCTATGGAGTTGCTTGAACAATACCTACAGTTCAAGCAAGAAGCTGAAATGGAGAACAAGAAAACCAAGAAGGAAAAGGATCCATTGAAACCCAAGCATCCAATGTCGGCATTTTTTCTGTTCACAAACGACAGGCGACCTGCTCTGGCTGCAGAGAACAAAACTGTCACTGAGGTTGCAAAGATCACGGGTGAAGAATGGAAAAACATGACGGAGGAACAAAAATTGCCTTATGAGGAGATGGCTAGGAAGAACAAGGAGAAGTATATGCAAGAGATGGAGGTTTACAAGCAGAATAAGGAAGAGGAAGCTTCCAATCTCAAAAAGGAAGAGGAAGAGCTGATGAAACTGCAAAAGCATGAAGCCCTGCAGCTTCTCAAGAAGAAGGAGAAGACTGAAAACATAATCAAGAAAACGAAGGAGGAGCAGAAGAAGAAGAAGAAGAAGGAAGAAATGAAGAATGTTGACCCCAACAAGCCCAAGAAGCCTGCATCCTCTTACCTCTTGTTCAGCAAGGAAGCAAGAAAGGCTCTGTTGGAGGAGAGACCAGGGACTAACAGCACCACCATTACTGCAATGATTTCACTGAAATGGAAGGAAATGAAGGAAGAAGAGAAAAAGGTTTGGAATGAGAAGGCAGCTGAAGCAATGGAAGCATACAAGAAGGAGGTAGAGGAATATAACAAAAGTGCCTCTGTTAATTGA

Protein Analysis

497

Amino Acids

57.81

Weight (kDa)

9.26

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 175 - 239 7.6e-13 HMG-box domain
HMG_box PF00505 178 - 239 6.3e-18 HMG (high mobility group) box
HMG_box_2 PF09011 290 - 358 2.3e-15 HMG-box domain
HMG_box PF00505 293 - 359 6.1e-19 HMG (high mobility group) box
HMG_box_2 PF09011 419 - 490 6.3e-11 HMG-box domain
HMG_box PF00505 422 - 490 1.2e-15 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11080 AT4G23800 AT4G23800
fragaria_vesca FvH4_5g04120 FvH4_5g04120
malus_domestica MD06G1103000.v1.1 MD14G1121900.v1.1
prunus_persica Prupe.5G115800_v2.0.a1
pyrus_communis pycom06g09760
rosa_chinensis RchiOBHm_Chr7g0195371
rosa_multiflora Rmu_sc0007366.1_g000005
rosa_roxburghii Rroxscaffold_3G00260530
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150100 Rh7BG151600 Rh7DG151200
rosa_wichuraiana Rw7G012810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 934
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccBSI CCGCTC 1 cut(s) 125
AccII CGCG 1 cut(s) 738
AciI CCGC 2 cut(s) 123, 227
AclWI GGATC 3 cut(s) 130, 860, 873
AcuI CTGAAG 5 cut(s) 371, 407, 621, 681, 1449
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 2 cut(s) 54, 166
AgsI TTSAA 6 cut(s) 373, 436, 463, 803, 820, 874
AjnI CCWGG 2 cut(s) 690, 1333
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 3 cut(s) 118, 625, 1324
AlwI GGATC 3 cut(s) 130, 860, 873
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 6 cut(s) 45, 243, 403, 536, 636, 693
ApeKI GCWGC 7 cut(s) 89, 224, 307, 442, 935, 1156, 1424
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 3 cut(s) 45, 403, 636
AsuHPI GGTGA 2 cut(s) 604, 989
BaeGI GKGCMC 1 cut(s) 61
BamHI GGATCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 134, 348
BarI GAAGNNNNNNTAC 4 cut(s) 659, 691, 692, 724
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 4 cut(s) 263, 380, 788, 1184
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 7 cut(s) 101, 211, 294, 429, 922, 1168, 1436
BccI CCATC 5 cut(s) 85, 154, 421, 1021, 1057
BciT130I CCWGG 2 cut(s) 692, 1335
BcoDI GTCTC 3 cut(s) 118, 625, 1324
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 4 cut(s) 443, 812, 936, 1154
BfuAI ACCTGC 1 cut(s) 934
BglII AGATCT 2 cut(s) 366, 388
BisI GCNGC 9 cut(s) 90, 123, 225, 228, 308, 443, 936, 1157, 1425
BlsI GCNGC 9 cut(s) 91, 124, 226, 229, 309, 444, 937, 1158, 1426
Bme1390I CCNGG 2 cut(s) 692, 1335
BmgT120I GGNCC 3 cut(s) 45, 403, 636
BmiI GGNNCC 3 cut(s) 637, 689, 867
BmrFI CCNGG 2 cut(s) 692, 1335
BmsI GCATC 3 cut(s) 763, 892, 1286
BpiI GAAGAC 4 cut(s) 263, 380, 788, 1184
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 172, 204
BpuEI CTTGAG 3 cut(s) 47, 437, 1148
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 118, 1324
BsaJI CCNNGG 4 cut(s) 41, 339, 471, 1334
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 166
Bse3DI GCAATG 3 cut(s) 756, 1368, 1440
BseBI CCWGG 2 cut(s) 692, 1335
BseDI CCNNGG 4 cut(s) 41, 339, 471, 1334
BseGI GGATG 4 cut(s) 200, 367, 883, 1277
BseLI CCNNNNNNNGG 2 cut(s) 54, 166
BseMI GCAATG 3 cut(s) 756, 1368, 1440
BseMII CTCAG 5 cut(s) 117, 203, 516, 570, 948
BseRI GAGGAG 6 cut(s) 356, 779, 782, 1037, 1223, 1340
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 7 cut(s) 101, 211, 294, 429, 922, 1168, 1436
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 6 cut(s) 47, 245, 405, 538, 638, 695
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 1351
BslI CCNNNNNNNGG 2 cut(s) 54, 166
BsmAI GTCTC 3 cut(s) 118, 625, 1324
BsmFI GGGAC 1 cut(s) 1351
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 6 cut(s) 47, 245, 405, 538, 638, 695
Bso31I GGTCTC 2 cut(s) 118, 1324
Bsp1286I GDGCHC 3 cut(s) 61, 134, 348
Bsp143I GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 2 cut(s) 123, 227
BspANI GGCC 6 cut(s) 47, 245, 405, 538, 638, 695
BspCNI CTCAG 5 cut(s) 116, 202, 517, 571, 949
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 637, 689, 867
BspMAI CTGCAG 3 cut(s) 447, 940, 1158
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 3 cut(s) 130, 860, 873
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 2 cut(s) 118, 1324
BsrBI CCGCTC 1 cut(s) 125
BsrDI GCAATG 3 cut(s) 756, 1368, 1440
BssECI CCNNGG 4 cut(s) 41, 339, 471, 1334
BssMI GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 41, 471
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 692, 1335
Bst4CI ACNGT 4 cut(s) 13, 267, 816, 952
Bst6I CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1392
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 49, 312, 540, 1275
BstDEI CTNAG 7 cut(s) 103, 189, 234, 378, 525, 579, 957
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 200, 367, 883, 1277
BstFNI CGCG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 7 cut(s) 138, 369, 391, 571, 585, 868, 972
BstMAI GTCTC 3 cut(s) 118, 625, 1324
BstMBI GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
BstMWI GCNNNNNNNGC 8 cut(s) 304, 418, 448, 935, 1270, 1313, 1430, 1439
BstNI CCWGG 2 cut(s) 692, 1335
BstSCI CCNGG 2 cut(s) 690, 1333
BstSFI CTRYAG 4 cut(s) 443, 812, 936, 1154
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 7 cut(s) 101, 211, 294, 429, 922, 1168, 1436
BstV2I GAAGAC 4 cut(s) 263, 380, 788, 1184
BstX2I RGATCY 3 cut(s) 366, 388, 865
BstYI RGATCY 3 cut(s) 366, 388, 865
BsuRI GGCC 6 cut(s) 47, 245, 405, 538, 638, 695
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 4 cut(s) 200, 367, 883, 1277
BtsIMutI CAGTG 4 cut(s) 9, 661, 954, 1370
BveI ACCTGC 1 cut(s) 934
Cac8I GCNNGC 4 cut(s) 49, 312, 540, 1275
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 45, 403, 636
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 472, 994, 1145
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 7 cut(s) 103, 189, 234, 378, 525, 579, 957
DpnI GATC 7 cut(s) 137, 368, 390, 570, 584, 867, 971
DpnII GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1392
EarI CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1392
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 41, 471
Eco24I GRGCYC 2 cut(s) 134, 348
Eco31I GGTCTC 2 cut(s) 118, 1324
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 5 cut(s) 371, 407, 621, 681, 1449
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 690, 1333
EcoT14I CCWWGG 2 cut(s) 41, 471
EcoT22I ATGCAT 1 cut(s) 756
EcoT38I GRGCYC 2 cut(s) 134, 348
ErhI CCWWGG 2 cut(s) 41, 471
FaeI CATG 3 cut(s) 475, 997, 1148
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 1351
FatI CATG 3 cut(s) 471, 993, 1144
Fnu4HI GCNGC 9 cut(s) 90, 123, 225, 228, 308, 443, 936, 1157, 1425
FokI GGATG 4 cut(s) 187, 374, 870, 1264
FriOI GRGCYC 2 cut(s) 134, 348
Fsp4HI GCNGC 9 cut(s) 90, 123, 225, 228, 308, 443, 936, 1157, 1425
FspBI CTAG 1 cut(s) 1032
GlaI GCGC 1 cut(s) 737
GluI GCNGC 9 cut(s) 90, 123, 225, 228, 308, 443, 936, 1157, 1425
HaeIII GGCC 6 cut(s) 47, 245, 405, 538, 638, 695
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 3 cut(s) 475, 997, 1148
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 3 cut(s) 419, 705, 1095
HinfI GANTC 2 cut(s) 152, 193
HphI GGTGA 2 cut(s) 604, 989
Hpy166II GTNNAC 4 cut(s) 595, 909, 1072, 1252
Hpy188I TCNGA 6 cut(s) 118, 129, 151, 192, 252, 426
Hpy188III TCNNGA 9 cut(s) 81, 105, 277, 349, 370, 586, 622, 1165, 1195
Hpy8I GTNNAC 4 cut(s) 595, 909, 1072, 1252
Hpy99I CGWCG 1 cut(s) 271
HpyCH4III ACNGT 4 cut(s) 13, 267, 816, 952
HpyCH4IV ACGT 1 cut(s) 651
HpyF10VI GCNNNNNNNGC 8 cut(s) 304, 418, 448, 935, 1270, 1313, 1430, 1439
HpyF3I CTNAG 7 cut(s) 103, 189, 234, 378, 525, 579, 957
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 3 cut(s) 475, 997, 1148
HspAI GCGC 1 cut(s) 736
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 5 cut(s) 130, 343, 351, 547, 1210
Lsp1109I GCAGC 7 cut(s) 101, 211, 294, 429, 922, 1168, 1436
LweI GCATC 3 cut(s) 763, 892, 1286
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 2 cut(s) 718, 952
MalI GATC 7 cut(s) 137, 368, 390, 570, 584, 867, 971
MbiI CCGCTC 1 cut(s) 125
MboI GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 3 cut(s) 366, 388, 865
MhlI GDGCHC 3 cut(s) 61, 134, 348
MluCI AATT 3 cut(s) 483, 1010, 1486
MlyI GAGTC 2 cut(s) 146, 187
MmeI TCCRAC 2 cut(s) 180, 1302
Mph1103I ATGCAT 1 cut(s) 756
MseI TTAA 2 cut(s) 612, 1485
MslI CAYNNNNRTG 1 cut(s) 1375
MspA1I CMGCKG 1 cut(s) 1427
MspR9I CCNGG 2 cut(s) 692, 1335
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 692, 1335
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 8 cut(s) 304, 418, 448, 935, 1270, 1313, 1430, 1439
NcoI CCATGG 1 cut(s) 471
NdeII GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
NlaIII CATG 3 cut(s) 475, 997, 1148
NlaIV GGNNCC 3 cut(s) 637, 689, 867
NmeAIII GCCGAG 2 cut(s) 431, 721
NmuCI GTSAC 2 cut(s) 718, 952
NsiI ATGCAT 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 1 cut(s) 476
PkrI GCNGC 9 cut(s) 91, 124, 226, 229, 309, 444, 937, 1158, 1426
PleI GAGTC 2 cut(s) 146, 187
PpsI GAGTC 2 cut(s) 146, 187
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 690, 1333
PspGI CCWGG 2 cut(s) 690, 1333
PspN4I GGNNCC 3 cut(s) 637, 689, 867
PspPI GGNCC 3 cut(s) 45, 403, 636
PsrI GAACNNNNNNTAC 2 cut(s) 795, 827
PstI CTGCAG 3 cut(s) 447, 940, 1158
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 366, 388, 865
PvuII CAGCTG 1 cut(s) 1427
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 1 cut(s) 1375
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 2 cut(s) 612, 1485
SatI GCNGC 9 cut(s) 90, 123, 225, 228, 308, 443, 936, 1157, 1425
Sau3AI GATC 7 cut(s) 135, 366, 388, 568, 582, 865, 969
Sau96I GGNCC 3 cut(s) 45, 403, 636
SchI GAGTC 2 cut(s) 146, 187
ScrFI CCNGG 2 cut(s) 692, 1335
SduI GDGCHC 3 cut(s) 61, 134, 348
SfaNI GCATC 3 cut(s) 763, 892, 1286
SfcI CTRYAG 4 cut(s) 443, 812, 936, 1154
SmiMI CAYNNNNRTG 1 cut(s) 1375
SmlI CTYRAG 3 cut(s) 62, 452, 1163
SmoI CTYRAG 3 cut(s) 62, 452, 1163
Sse9I AATT 3 cut(s) 483, 1010, 1486
SsiI CCGC 2 cut(s) 123, 227
SspMI CTAG 1 cut(s) 1032
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 690, 1333
StyI CCWWGG 2 cut(s) 41, 471
TaaI ACNGT 4 cut(s) 13, 267, 816, 952
TaiI ACGT 1 cut(s) 654
TaqI TCGA 4 cut(s) 276, 288, 324, 623
TasI AATT 3 cut(s) 483, 1010, 1486
TauI GCSGC 2 cut(s) 125, 230
Tru1I TTAA 2 cut(s) 612, 1485
Tru9I TTAA 2 cut(s) 612, 1485
TscAI CASTG 4 cut(s) 16, 661, 961, 1377
TseFI GTSAC 2 cut(s) 718, 952
TseI GCWGC 7 cut(s) 89, 224, 307, 442, 935, 1156, 1424
Tsp45I GTSAC 2 cut(s) 718, 952
TspDTI ATGAA 7 cut(s) 179, 332, 413, 1145, 1161, 1256, 1403
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 4 cut(s) 16, 661, 961, 1377
XspI CTAG 1 cut(s) 1032
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.