Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004643

Physical Location & Seq

Genomic Coordinates Forward (+)

15751684 .. 15752591

Gene Structure 908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGATATCCTTCCCAATCAAACTCCTTGATATGTTGAATCAAAACAAACGATGGGTCATGGGCCTCCTTGATGTGGCTTTCTCTAAATACAGTCCAATTACATTTGGCAAGCAAGATATGGGCCTTTTGAAGGGCCTTGCTTATGCTCACTCTGGGTTTTGGCCCATTTGGTCAATTCCAATCACTATATATGTTTTAGAGCCAAGTTTTTTCTTATATGCATATCTTTTCCATGGAGCCTACGGTCAAGACTTGCTAGACTTTGTTTTAGCAGGAGGAAAACATTCCAAAGGTGGTGGAATGACCAAAGGATGTGGATCATTAGGATGTGGACCATTAGGGGACTCTCAAGCTACTTGTTTGGATCCACTTGAGTTCTTGCTCAAGTCCTTCGGCGTTTCCACACATGGGTTCAATCTGGCTAGCAAAATCTTCGACGACGATCAAAGCGAAAGGTACGAACAGGGAATCATGGATTTTGAAGTCCCATCGTCCATGTTTGCGCCCTTAACAATGGCTGCCGTTGTGAACTTGGCTGCCTCCAATTGGGGGCTTGTGAGATTTTCAGAGGAAGCAATAATCTGGAGTGGCTGTTTGTGCAGATGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

205

Amino Acids

22.37

Weight (kDa)

5.48

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	4 - 75	1e-09	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23990 AT4G23990 AT4G24000 AT4G24000 AT4G24010
fragaria_vesca	FvH4_5g11680
malus_domestica	MD14G1132000.v1.1 MD14G1132200.v1.1 MD14G1132300.v1.1
prunus_persica	Prupe.5G123500_v2.0.a1 Prupe.5G123600_v2.0.a1 Prupe.5G123700_v2.0.a1 Prupe.5G123800_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1
pyrus_communis	pycom06g10420
rosa_chinensis	RchiOBHm_Chr7g0186101
rosa_laevigata	RLG00000004864
rosa_multiflora	Rmu_co8339917.1_g000001 Rmu_sc0000194.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268430
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069600 Rh7BG085500 Rh7CG078600 Rh7DG078600
rosa_wichuraiana	Rw7G006540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	328, 362, 375
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	5 cut(s)	76, 133, 411, 549, 552
AgsI	TTSAA	4 cut(s)	40, 133, 418, 485
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	3 cut(s)	328, 362, 375
AoxI	GGCC	4 cut(s)	64, 124, 136, 164
ApeKI	GCWGC	2 cut(s)	521, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	5 cut(s)	64, 124, 136, 165, 335
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	508, 526
BccI	CCATC	2 cut(s)	48, 499
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BfaI	CTAG	2 cut(s)	260, 426
BisI	GCNGC	2 cut(s)	522, 540
BlsI	GCNGC	2 cut(s)	523, 541
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	5 cut(s)	64, 124, 136, 165, 335
BmiI	GGNNCC	2 cut(s)	241, 369
BmtI	GCTAGC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	607
BpuEI	CTTGAG	3 cut(s)	336, 371, 395
BsaBI	GATNNNNATC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 133, 411, 549, 552
Bse8I	GATNNNNATC	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	320, 335
BseJI	GATNNNNATC	1 cut(s)	319
BseLI	CCNNNNNNNGG	5 cut(s)	76, 133, 411, 549, 552
BseXI	GCAGC	2 cut(s)	508, 526
BshFI	GGCC	4 cut(s)	66, 126, 138, 166
BslFI	GGGAC	2 cut(s)	359, 473
BslI	CCNNNNNNNGG	5 cut(s)	76, 133, 411, 549, 552
BsmFI	GGGAC	2 cut(s)	359, 473
BsnI	GGCC	4 cut(s)	66, 126, 138, 166
Bsp143I	GATC	3 cut(s)	320, 367, 445
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	4 cut(s)	66, 126, 138, 166
BspLI	GGNNCC	2 cut(s)	241, 369
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	3 cut(s)	328, 362, 375
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	320, 367, 445
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	95, 248
BstC8I	GCNNGC	2 cut(s)	113, 427
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	320, 335
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	323, 370, 448
BstMBI	GATC	3 cut(s)	320, 367, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	508, 526
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	4 cut(s)	66, 126, 138, 166
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	320, 335
Cac8I	GCNNGC	2 cut(s)	113, 427
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	5 cut(s)	64, 124, 136, 165, 335
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	4 cut(s)	280, 298, 315, 333
CviAII	CATG	5 cut(s)	61, 236, 410, 475, 499
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	3 cut(s)	322, 369, 447
DpnII	GATC	3 cut(s)	320, 367, 445
Eco130I	CCWWGG	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	5 cut(s)	64, 239, 413, 478, 502
FaqI	GGGAC	2 cut(s)	359, 473
FatI	CATG	5 cut(s)	60, 235, 409, 474, 498
Fnu4HI	GCNGC	2 cut(s)	522, 540
FokI	GGATG	2 cut(s)	327, 342
Fsp4HI	GCNGC	2 cut(s)	522, 540
FspBI	CTAG	2 cut(s)	260, 426
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	2 cut(s)	522, 540
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	4 cut(s)	66, 126, 138, 166
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	5 cut(s)	64, 239, 413, 478, 502
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	3 cut(s)	40, 347, 471
Hpy166II	GTNNAC	2 cut(s)	335, 532
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	2 cut(s)	251, 586
Hpy8I	GTNNAC	2 cut(s)	335, 532
Hpy99I	CGWCG	2 cut(s)	443, 446
HpyAV	CCTTC	3 cut(s)	22, 127, 403
HpyCH4III	ACNGT	2 cut(s)	95, 248
HpyCH4V	TGCA	2 cut(s)	224, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	64, 239, 413, 478, 502
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	3 cut(s)	320, 367, 445
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	141, 261, 407, 452, 571
Lsp1109I	GCAGC	2 cut(s)	508, 526
MaeI	CTAG	2 cut(s)	260, 426
MalI	GATC	3 cut(s)	322, 369, 447
MboI	GATC	3 cut(s)	320, 367, 445
MboII	GAAGA	1 cut(s)	427
MfeI	CAATTG	1 cut(s)	547
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	3 cut(s)	99, 177, 547
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	77, 272, 553, 565
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	3 cut(s)	320, 367, 445
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	5 cut(s)	64, 239, 413, 478, 502
NlaIV	GGNNCC	2 cut(s)	241, 369
NsiI	ATGCAT	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	40, 471
PkrI	GCNGC	2 cut(s)	523, 541
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	241, 369
PspPI	GGNCC	5 cut(s)	64, 124, 136, 165, 335
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	2 cut(s)	522, 540
Sau3AI	GATC	3 cut(s)	320, 367, 445
Sau96I	GGNCC	5 cut(s)	64, 124, 136, 165, 335
SchI	GAGTC	1 cut(s)	341
SetI	ASST	3 cut(s)	298, 358, 461
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	3 cut(s)	351, 374, 386
SmoI	CTYRAG	3 cut(s)	351, 374, 386
Sse9I	AATT	3 cut(s)	99, 177, 547
SspMI	CTAG	2 cut(s)	260, 426
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	95, 248
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	99, 177, 547
TfiI	GAWTC	2 cut(s)	40, 471
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TseI	GCWGC	2 cut(s)	521, 539
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	2 cut(s)	260, 426
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.