pycom06g10520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016845
Physical Location & Seq
Reverse (-)
15820572 .. 15821329
758 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGTGGTTCAATATCATATATAGTGAATATAGTGCCACAAAGAGGCCACATGCAAAAATAGGTGCAGAAGATTTGAACTCGAAAAAAATATTATTCAAGAAGCTTTTGTGTAAGAGTCATTATGACTCTACCTCTCTTTTGGTTCCATTTCCTCCCACTTACAATTATAAAAAGCAAGACTTCTGCACTTCTCCTCCAAGCACTGAACTAGGGAAAGAAAATACAAACCCTAAGATGCTTCCTCAAGTCAAGATTTGCATCGTACTCCTCTTGCTCTTCAACTTTTCGATTTCGGGCACAGCTGACAGCTTCAAGGATGGAATGGAGCTCACTTACTCAAGTGGTCCTGAGCTTGAGGTGGTTAATCCGCAGATGATAAAAGCTGGGAGAAAGCTGCTCATTTCACTCGATGCAATGTTAGATTACCATGAGCCAGGGCCAAATCCAGGCCACGAACCACATAAAGGAGGGAGTGCTGGTGGTAGAGGTGGGAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.34

Weight (kDa)

8.68

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016845)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11540
malus_domestica MD06G1112200.v1.1 MD14G1133600.v1.1 MD14G1133700.v1.1
prunus_persica Prupe.5G125500_v2.0.a1
pyrus_communis pycom06g10520
rosa_chinensis RchiOBHm_Chr7g0186221
rosa_roxburghii Rroxscaffold_3G00268310
rosa_rugosa Rorug06G0472700
rosa_samantha Rh7AG068600 Rh7BG084300 Rh7CG079500 Rh7DG080000
rosa_wichuraiana Rw7G006650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AciI CCGC 1 cut(s) 368
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 3 cut(s) 42, 446, 464
AgsI TTSAA 5 cut(s) 10, 76, 97, 280, 313
AjnI CCWGG 2 cut(s) 433, 445
AluBI AGCT 7 cut(s) 103, 302, 309, 328, 352, 383, 394
AluI AGCT 7 cut(s) 103, 302, 309, 328, 352, 383, 394
Alw21I GWGCWC 1 cut(s) 330
AoxI GGCC 3 cut(s) 44, 437, 448
ApeKI GCWGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 344, 437
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 381
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 435, 447
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 2 cut(s) 435, 447
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 344, 437
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 435, 447
BmsI GCATC 3 cut(s) 225, 267, 400
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 3 cut(s) 228, 322, 374
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 434
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 446, 464
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 2 cut(s) 435, 447
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 3 cut(s) 42, 446, 464
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 183, 257
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 381
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 2 cut(s) 84, 169
BshFI GGCC 3 cut(s) 46, 439, 450
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 42, 446, 464
BsnI GGCC 3 cut(s) 46, 439, 450
Bsp1286I GDGCHC 2 cut(s) 299, 330
BspACI CCGC 1 cut(s) 368
BspANI GGCC 3 cut(s) 46, 439, 450
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 435, 447
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 231, 348
BstF5I GGATG 1 cut(s) 322
BstNI CCWGG 2 cut(s) 435, 447
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 433, 445
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 381
BsuRI GGCC 3 cut(s) 46, 439, 450
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 344, 437
Csp6I GTAC 1 cut(s) 263
CviAII CATG 2 cut(s) 50, 428
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 231, 348
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 433, 445
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 2 cut(s) 53, 431
FaiI YATR 9 cut(s) 17, 19, 21, 30, 51, 123, 168, 429, 462
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 2 cut(s) 49, 427
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 395
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 46, 439, 450
Hin1II CATG 2 cut(s) 53, 431
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 115, 125, 493
Hpy188III TCNNGA 3 cut(s) 97, 250, 347
HpyCH4V TGCA 5 cut(s) 53, 65, 186, 258, 413
HpyF3I CTNAG 2 cut(s) 231, 348
Hsp92II CATG 2 cut(s) 53, 431
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 360, 369, 420, 432, 447, 459, 462
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 3 cut(s) 225, 267, 400
MaeI CTAG 1 cut(s) 209
MboII GAAGA 2 cut(s) 80, 268
MhlI GDGCHC 2 cut(s) 299, 330
MluCI AATT 1 cut(s) 163
MlyI GAGTC 2 cut(s) 119, 124
MnlI CCTC 9 cut(s) 36, 142, 162, 204, 252, 278, 349, 461, 479
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 435, 447
MvaI CCWGG 2 cut(s) 435, 447
NlaIII CATG 2 cut(s) 53, 431
NlaIV GGNNCC 1 cut(s) 144
NspI RCATGY 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 2 cut(s) 119, 123
PpsI GAGTC 2 cut(s) 119, 123
PsiI TTATAA 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 433, 445
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 433, 445
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 344, 437
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 395
Sau96I GGNCC 2 cut(s) 344, 437
SchI GAGTC 2 cut(s) 119, 124
ScrFI CCNGG 2 cut(s) 435, 447
SduI GDGCHC 2 cut(s) 299, 330
SfaNI GCATC 3 cut(s) 225, 267, 400
SinI GGWCC 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 243, 337, 353
SmoI CTYRAG 3 cut(s) 243, 337, 353
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 368
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 433, 445
TaqI TCGA 3 cut(s) 80, 287, 408
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 394
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 344
XceI RCATGY 1 cut(s) 53
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.