Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003274

Physical Location & Seq

Genomic Coordinates Reverse (-)

16788731 .. 16790617

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGATCTTCATCACCTACTCTCTGGTGAAGGCAAAGGGATCCACCGTGATGAAAGTCCCATAGATAAAGGAAACGAAGGGAGGGCTGGCAAAGCTCTTTCTAGTGAGGGTATTGGTTCATTACTATTGGAAAAATCTGATCCACTAATTACTTTGATCAATACTTCTGATGATTTCAGCTCGGAACATCTCGGAGTCAAAGAAGATGTTTCTCTTGTGAGAAAATTAGACGAGAATGACTCTGATTTGGACTCACCTTGTTGGAAAGGAACCTTGGCTTCTTGGCAATCTCCATTTGGAGTTTCAAGTTTGAGTTCAGACTCTGTTGAAAATGAACAAGAAACGCGTAATAGTTTGAATCCACTGGCACCGCATTTTTTTCCTCGTCATGCTAAAACAGTAGTAAATTATCATGTAAGTGAGTGCGTAGAAGATGATTTCTCATCTTTCCAAAAGAGTGAATCTTCAGCTGTTGTTTCATTCTCCAAAGGGCATGAACCAGTTGATGAATCAGGATCAAAGTCTTCCATATCGGTTTATGGAATTGCTGATCAGCCTTCCAATGACAACCATCAAGTGGAAAGCGCTTATGCCCTGCCTAACTCAGAATGTGGCTCTGTGCTTAATGCACCTGTGGGACCATCCAAGTTGCTGTCTACTCGTCCAAAAATAGATGTCCCAACAATACTTAATGTCATGCATGAAATGTCAGAAATGCTTGTACAAAATTGTGCAAATGATTTAGATTCACTGAACGAATATACGCCTGATGTGATCCAGCATATAATCAATAATCTTTCCATGATCCAACCGAGGGCCGGAGGAAAGACTCCAATCTCTGATATAACTCTTATGAGCACTCCGTACTGTCCTAATAAATCAACAGAGCTTCAACAGTGCTCAAACACGGGGTTTCAATTAACAAGGACAAATGCTTTGGCTGCTCTGCATGAGCTTGATTACCAGAAGTGCTACAAGGGGCGCAAGGTTAATTCTCATGTTTTTACTGAGAGAACGTTGGATTCCTGTCCTTCACGTAGTGGCATTGACACTGAGAAGAGCAATGACATCATTCAGGTTATGGGCAACACGTTGAGAGGCAATCATCTGAACAGTGAAGAGTTAGATCCAGAAGCTCTAGTATATAAAAAATTATGGCTCGAGGCTGAAGCAGAATTACGTTCCCTGAAGTATGAAACTTGTGTCTTATACACGCAAGTGGAAATGGGCGGCCGCAAATTAGACAAATATAAGGTGTCAGGCAAGCTATTAGCAAGAGACATACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.27

Weight (kDa)

5.13

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390
malus_domestica	MD06G1124500.v1.1
prunus_persica	Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1
pyrus_communis	pycom06g11490 pycom14g11660
rosa_chinensis	RchiOBHm_Chr7g0187831
rosa_laevigata	RLG00000004753
rosa_multiflora	Rmu_sc0004483.1_g000042
rosa_roxburghii	Rroxscaffold_3G00267020
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7AG089900 Rh7BG091500 Rh7CG090600 Rh7DG092300
rosa_wichuraiana	Rw7G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	656
AccII	CGCG	1 cut(s)	346
AciI	CCGC	3 cut(s)	371, 1230, 1234
AclI	AACGTT	1 cut(s)	1016
AclWI	GGATC	8 cut(s)	12, 34, 47, 134, 523, 769, 799, 1121
AcoI	YGGCCR	1 cut(s)	1231
AcuI	CTGAAG	3 cut(s)	450, 1188, 1208
AdeI	CACNNNGTG	1 cut(s)	1040
AfaI	GTAC	2 cut(s)	723, 866
AfeI	AGCGCT	1 cut(s)	586
AfiI	CCNNNNNNNGG	3 cut(s)	577, 814, 818
AflIII	ACRYGT	2 cut(s)	344, 1089
AgsI	TTSAA	5 cut(s)	306, 329, 358, 893, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AleI	CACNNNNGTG	1 cut(s)	1217
AluBI	AGCT	7 cut(s)	95, 180, 470, 889, 955, 1136, 1267
AluI	AGCT	7 cut(s)	95, 180, 470, 889, 955, 1136, 1267
Alw21I	GWGCWC	2 cut(s)	860, 902
Alw26I	GTCTC	1 cut(s)	1272
AlwI	GGATC	8 cut(s)	12, 34, 47, 134, 523, 769, 799, 1121
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	1160
Aor51HI	AGCGCT	1 cut(s)	586
AoxI	GGCC	2 cut(s)	816, 1231
ApeKI	GCWGC	1 cut(s)	941
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
AspLEI	GCGC	2 cut(s)	587, 984
AspS9I	GGNCC	2 cut(s)	638, 816
AsuHPI	GGTGA	3 cut(s)	5, 38, 246
AvaI	CYCGRG	1 cut(s)	1160
AvaII	GGWCC	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	860, 902
BbvI	GCAGC	1 cut(s)	928
BccI	CCATC	2 cut(s)	579, 649
BclI	TGATCA	2 cut(s)	156, 550
BcoDI	GTCTC	1 cut(s)	1272
BfaI	CTAG	3 cut(s)	102, 1139, 1288
BfoI	RGCGCY	1 cut(s)	588
BisI	GCNGC	3 cut(s)	942, 1231, 1234
BlsI	GCNGC	3 cut(s)	943, 1232, 1235
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	1160
BmgT120I	GGNCC	2 cut(s)	638, 816
BmiI	GGNNCC	4 cut(s)	41, 271, 369, 639
BpiI	GAAGAC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BsaAI	YACGTR	1 cut(s)	1037
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	273, 812
Bsc4I	CCNNNNNNNGG	3 cut(s)	577, 814, 818
Bse1I	ACTGG	2 cut(s)	369, 500
Bse3DI	GCAATG	1 cut(s)	1069
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	273, 812
BseGI	GGATG	1 cut(s)	641
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	577, 814, 818
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	3 cut(s)	618, 999, 1044
BseNI	ACTGG	2 cut(s)	369, 500
BseX3I	CGGCCG	1 cut(s)	1231
BseXI	GCAGC	1 cut(s)	928
Bsh1236I	CGCG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	1234
BshFI	GGCC	2 cut(s)	818, 1233
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	1234
BsiHKAI	GWGCWC	2 cut(s)	860, 902
BsiHKCI	CYCGRG	1 cut(s)	1160
BsiSI	CCGG	1 cut(s)	819
BslFI	GGGAC	3 cut(s)	42, 651, 662
BslI	CCNNNNNNNGG	3 cut(s)	577, 814, 818
BsmAI	GTCTC	1 cut(s)	1272
BsmFI	GGGAC	3 cut(s)	42, 651, 662
BsnI	GGCC	2 cut(s)	818, 1233
BsoBI	CYCGRG	1 cut(s)	1160
Bsp1286I	GDGCHC	2 cut(s)	860, 902
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
BspACI	CCGC	3 cut(s)	371, 1230, 1234
BspANI	GGCC	2 cut(s)	818, 1233
BspCNI	CTCAG	3 cut(s)	617, 1000, 1045
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	41, 271, 369, 639
BspPI	GGATC	8 cut(s)	12, 34, 47, 134, 523, 769, 799, 1121
BspQI	GCTCTTC	1 cut(s)	1052
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	1069
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	369, 500
BssECI	CCNNGG	2 cut(s)	273, 812
BssMI	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	5 cut(s)	47, 400, 869, 897, 1115
Bst6I	CTCTTC	2 cut(s)	1052, 1113
BstAUI	TGTACA	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	2 cut(s)	88, 1265
BstDEI	CTNAG	3 cut(s)	604, 1008, 1053
BstF5I	GGATG	1 cut(s)	641
BstFNI	CGCG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	587, 984
BstKTI	GATC	9 cut(s)	7, 42, 142, 159, 518, 553, 777, 807, 1129
BstMAI	GTCTC	1 cut(s)	1272
BstMBI	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
BstMCI	CGRYCG	1 cut(s)	1234
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 941
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	928
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	3 cut(s)	4, 39, 1126
BstYI	RGATCY	3 cut(s)	4, 39, 1126
BstZI	CGGCCG	1 cut(s)	1231
BsuRI	GGCC	2 cut(s)	818, 1233
BtsCI	GGATG	1 cut(s)	641
BtsIMutI	CAGTG	5 cut(s)	362, 749, 902, 1050, 1120
Cac8I	GCNNGC	2 cut(s)	88, 1265
CaiI	CAGNNNCTG	1 cut(s)	323
CciNI	GCGGCCGC	1 cut(s)	1231
CfoI	GCGC	2 cut(s)	587, 984
Cfr13I	GGNCC	2 cut(s)	638, 816
Csp6I	GTAC	2 cut(s)	722, 865
CviAII	CATG	8 cut(s)	389, 413, 494, 697, 701, 802, 950, 998
CviQI	GTAC	2 cut(s)	722, 865
DdeI	CTNAG	3 cut(s)	604, 1008, 1053
DpnI	GATC	9 cut(s)	6, 41, 141, 158, 517, 552, 776, 806, 1128
DpnII	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
DraIII	CACNNNGTG	1 cut(s)	1040
EaeI	YGGCCR	1 cut(s)	1231
EagI	CGGCCG	1 cut(s)	1231
Eam1104I	CTCTTC	2 cut(s)	1052, 1113
EarI	CTCTTC	2 cut(s)	1052, 1113
EclXI	CGGCCG	1 cut(s)	1231
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	638
Eco47III	AGCGCT	1 cut(s)	586
Eco52I	CGGCCG	1 cut(s)	1231
Eco57I	CTGAAG	3 cut(s)	450, 1188, 1208
Eco88I	CYCGRG	1 cut(s)	1160
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	8 cut(s)	392, 416, 497, 700, 704, 805, 953, 1001
FaqI	GGGAC	3 cut(s)	42, 651, 662
FatI	CATG	8 cut(s)	388, 412, 493, 696, 700, 801, 949, 997
FbaI	TGATCA	2 cut(s)	156, 550
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	3 cut(s)	942, 1231, 1234
FokI	GGATG	1 cut(s)	628
Fsp4HI	GCNGC	3 cut(s)	942, 1231, 1234
FspBI	CTAG	3 cut(s)	102, 1139, 1288
GlaI	GCGC	2 cut(s)	586, 983
GluI	GCNGC	3 cut(s)	942, 1231, 1234
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	818, 1233
HapII	CCGG	1 cut(s)	819
HhaI	GCGC	2 cut(s)	587, 984
Hin1II	CATG	8 cut(s)	392, 416, 497, 700, 704, 805, 953, 1001
Hin6I	GCGC	2 cut(s)	585, 982
HinP1I	GCGC	2 cut(s)	585, 982
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	3 cut(s)	5, 38, 246
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188III	TCNNGA	2 cut(s)	513, 1130
Hpy8I	GTNNAC	1 cut(s)	657
HpyAV	CCTTC	4 cut(s)	23, 71, 567, 1041
HpyCH4III	ACNGT	5 cut(s)	47, 400, 869, 897, 1115
HpyCH4IV	ACGT	4 cut(s)	1016, 1036, 1091, 1180
HpyCH4V	TGCA	4 cut(s)	629, 700, 734, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 941
HpyF3I	CTNAG	3 cut(s)	604, 1008, 1053
HpySE526I	ACGT	4 cut(s)	1016, 1036, 1091, 1180
Hsp92II	CATG	8 cut(s)	392, 416, 497, 700, 704, 805, 953, 1001
HspAI	GCGC	2 cut(s)	585, 982
Ksp22I	TGATCA	2 cut(s)	156, 550
Kzo9I	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
LguI	GCTCTTC	1 cut(s)	1052
Lsp1109I	GCAGC	1 cut(s)	928
MaeI	CTAG	3 cut(s)	102, 1139, 1288
MaeII	ACGT	4 cut(s)	1016, 1036, 1091, 1180
MalI	GATC	9 cut(s)	6, 41, 141, 158, 517, 552, 776, 806, 1128
MboI	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
MboII	GAAGA	6 cut(s)	215, 443, 456, 516, 1069, 1130
MflI	RGATCY	3 cut(s)	4, 39, 1126
MhlI	GDGCHC	2 cut(s)	860, 902
MluI	ACGCGT	1 cut(s)	344
MlyI	GAGTC	5 cut(s)	204, 233, 245, 314, 823
MmeI	TCCRAC	3 cut(s)	242, 832, 999
MnlI	CCTC	7 cut(s)	75, 100, 393, 807, 815, 1091, 1156
Mph1103I	ATGCAT	1 cut(s)	702
MseI	TTAA	4 cut(s)	624, 690, 920, 990
MslI	CAYNNNNRTG	3 cut(s)	48, 417, 1217
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	819
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	92, 941
NdeII	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
NlaIII	CATG	8 cut(s)	392, 416, 497, 700, 704, 805, 953, 1001
NlaIV	GGNNCC	4 cut(s)	41, 271, 369, 639
NotI	GCGGCCGC	1 cut(s)	1231
NsiI	ATGCAT	1 cut(s)	702
OliI	CACNNNNGTG	1 cut(s)	1217
PaeR7I	CTCGAG	1 cut(s)	1160
PciSI	GCTCTTC	1 cut(s)	1052
PfeI	GAWTC	5 cut(s)	358, 461, 509, 746, 1022
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	943, 1232, 1235
PleI	GAGTC	5 cut(s)	203, 233, 245, 314, 823
PpsI	GAGTC	5 cut(s)	203, 233, 245, 314, 823
Ppu21I	YACGTR	1 cut(s)	1037
Psp1406I	AACGTT	1 cut(s)	1016
PspN4I	GGNNCC	4 cut(s)	41, 271, 369, 639
PspPI	GGNCC	2 cut(s)	638, 816
PspXI	VCTCGAGB	1 cut(s)	1160
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	4, 39, 1126
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	723, 866
RsaNI	GTAC	2 cut(s)	722, 865
RseI	CAYNNNNRTG	3 cut(s)	48, 417, 1217
SapI	GCTCTTC	1 cut(s)	1052
SaqAI	TTAA	4 cut(s)	624, 690, 920, 990
SatI	GCNGC	3 cut(s)	942, 1231, 1234
Sau3AI	GATC	9 cut(s)	4, 39, 139, 156, 515, 550, 774, 804, 1126
Sau96I	GGNCC	2 cut(s)	638, 816
SchI	GAGTC	5 cut(s)	204, 233, 245, 314, 823
SduI	GDGCHC	2 cut(s)	860, 902
Sfr274I	CTCGAG	1 cut(s)	1160
SinI	GGWCC	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	1160
SmiMI	CAYNNNNRTG	3 cut(s)	48, 417, 1217
SmlI	CTYRAG	1 cut(s)	1160
SmoI	CTYRAG	1 cut(s)	1160
SsiI	CCGC	3 cut(s)	371, 1230, 1234
SspMI	CTAG	3 cut(s)	102, 1139, 1288
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	5 cut(s)	47, 400, 869, 897, 1115
TaiI	ACGT	4 cut(s)	1019, 1039, 1094, 1183
TaqI	TCGA	1 cut(s)	1161
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	2 cut(s)	1233, 1236
TfiI	GAWTC	5 cut(s)	358, 461, 509, 746, 1022
Tru1I	TTAA	4 cut(s)	624, 690, 920, 990
Tru9I	TTAA	4 cut(s)	624, 690, 920, 990
TscAI	CASTG	5 cut(s)	369, 756, 902, 1057, 1120
TseI	GCWGC	1 cut(s)	941
TspDTI	ATGAA	8 cut(s)	66, 108, 348, 468, 510, 522, 717, 1209
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	5 cut(s)	369, 756, 902, 1057, 1120
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	638
XhoI	CTCGAG	1 cut(s)	1160
XmiI	GTMKAC	1 cut(s)	656
XspI	CTAG	3 cut(s)	102, 1139, 1288
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.