Rw7G007750

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
7108498 .. 7112741
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007750.1

Sequence Viewer

Length: 2058 bp
ATGGAGGAGGATGGTCATGGAAAGAGAGTCTCATCTTCTGCAGTGTCCTCTCGTTTGTCAGCTAAAGCTCAGCCCTTTAGATTGAACCGCTTTACTGCCCAACCCACTTGGACTTCTTCATTGACTTCAGTAGACCCTTGTGATTCCTTGATCAAATCCTTGTCTGATGTCAACTTGGAAGAAGATCCATTACCATCTGCATTGAATTTCGGGTTGGATTCATTACAGGGTTCATGGTTTGGCCAGCACAGTGACAGTTTGGCCTGCACCAATTATGCTTATGAGACCTTGCTTGAACAAGGAAAGCCTGTAAAAAAATCGAAACTCTATGATGAAAACTCTGAAAGTGTTCATGAGAAATGCAGTTATTTAACCATGGGAAGAGAAACGCCATTCACTTCAAGTTCCACAGACCCAGTAGATGCTGGAATTTTCTCTTCTTCAGCAGTAAATTCTGTGGCGACTTCATATGAGTTTCCGATGTCAGTTATGTACTCTGCATCCATGCTTCAGAGTTATTCTCAACCTGAGCTAACGTATACTACACCAGCTGCAAGTTGGAACCGTAGTAATTTGACAATGACTTTTGGTGAGGTTGGTTTGACAAAATATGATCCTTGTGCGGCTAATTCTACAGCTTCCCAGTCACCAAGATACGATGCTTTTCTGGATCTGGGGCTTGGTTCATCAGATACCAGAATAACTTTTTATCCCTTGAATCCCATTTTGTCAAAAAATGCTGAGGTTACAGGCAGCTTTGCAGTGAAATGCAATGATAATTCTTCTAAATGCAGTCCTCCTGACATAATGGATCTTCATCAGCTGCTGTATGGTGAAGGCAAAAAGACTGACCATGATAAAAGTCCGAGTGATAAAGGAAACGAACGGAAATGTGGAAAAACTGTATCTAGTGAGGGTTCAGACCCGTTACTAACAGATAAGTCTGATCCACAAATCACTTTAGAGAAGCTTTATGATAAATCTAGTTCGGAACATCAGGATGCTGAGGCAGCTGTTTCTCTTTCAACCAAGTTAGATGGGAACGACTCTGATGTGGACTCACCTTGTTGGAGAGGAAGCCAGGCTTCTAGACAAACTCCACTTGGAGTTTCAAGGTCTTTGAGTTCACACTCTATTGAAAATGTACAAGAAGCAAGTTATAGTCTGAATCCGTTGGCGCCTCATTTTTTTCCTCGGCCTTCTAAAGCAATTGTTAATTGCTATGCAAATGAATGTGATGCGGATGATTTCTCATCTTTCAAAAAAAGTGAATCTGAAGCTGTCGGGGCTGTTAGTTCATTCTCCAAGGAGAATACATCAGTTGATAAAGCAGGATCAAAGTCGTCATTATCGCTTAATGGAATGGGAACTCAAACTTCTAATGACATCCATGAACCAAAAAGAGAATATGCCCTGCTTGATAAATCAGGAAGTTACTCTGCGCTCAGCGAGGCTATATCCAAGTTATTGTGTACAGATTCAAAAATAGATGTTTCAACAGTGCTAAATATGATGCATGATCTGTCAAGTTTTCTTGTACAAAATTGTTCAAATGACGTTTTATTGAATGATCATGACTTGATCCAGCATATAATCAATAACCTATGTATGTGCTTCCAACATAGGGCTGGAGGAAAGACTCCAATGCCTGATTTTACTGTTTCAGGCACTCCATACTTTCCTAATAAGTCAACGGAGATCATCGAGGCGGGGTGCTCGAACATGGGGTTTCAAGTAACAAAGACAGGGGCTCTTGCTGTTCCACATGAATTTGATCATCAGAATGTGGTTGGTTGTCTTGATATTACTGAGCGAATGTTGAATTCCTTTCCTTCATATAGCAACGTAGTTACTGGGAAGAGCAAAGACATTATTCAGATGCAGGTCATGGGAAATGCTGTGAGAGACAGTTATTCAACCAAGGACGAGATAGACCCACAAGCTTTAGTATACAAAAAACTGTGGCTCGAGGCTGAAGCAACATTGTGTGCCATGAAGTATGAAAGATGTGTGATGCATGAAATTGGAAATGGGATGGCGCAATCTAAACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

685

Amino Acids

74.69

Weight (kDa)

5.1

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1873
AccB1I GGYRCC 1 cut(s) 1177
AccI GTMKAC 3 cut(s) 132, 539, 1950
AciI CCGC 4 cut(s) 88, 623, 1241, 1709
AclWI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 5 cut(s) 205, 429, 451, 1769, 1822
AcuI CTGAAG 5 cut(s) 111, 426, 494, 1296, 1995
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 4 cut(s) 494, 1146, 1474, 1539
AfiI CCNNNNNNNGG 1 cut(s) 1624
AjnI CCWGG 1 cut(s) 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
Alw21I GWGCWC 1 cut(s) 1718
Alw26I GTCTC 3 cut(s) 34, 278, 1899
AlwI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
AlwNI CAGNNNCTG 1 cut(s) 826
Ama87I CYCGRG 1 cut(s) 1967
AoxI GGCC 3 cut(s) 241, 261, 1196
ApeKI GCWGC 4 cut(s) 551, 753, 823, 1010
ApoI RAATTY 5 cut(s) 205, 429, 451, 1769, 1822
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 3 cut(s) 1180, 1444, 2041
AsuHPI GGTGA 4 cut(s) 602, 639, 845, 1053
AvaI CYCGRG 1 cut(s) 1967
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 1177
BanII GRGCYC 1 cut(s) 1753
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
Bbv12I GWGCWC 1 cut(s) 1718
BbvCI CCTCAGC 2 cut(s) 741, 1005
BbvI GCAGC 4 cut(s) 538, 765, 810, 1022
BccI CCATC 4 cut(s) 5, 202, 1031, 2029
BciT130I CCWGG 1 cut(s) 1082
BclI TGATCA 3 cut(s) 150, 1570, 1774
BcoDI GTCTC 3 cut(s) 34, 278, 1899
BfaI CTAG 3 cut(s) 909, 984, 1089
BfmI CTRYAG 2 cut(s) 39, 633
BfoI RGCGCY 1 cut(s) 1181
BfuAI ACCTGC 1 cut(s) 1873
BisI GCNGC 5 cut(s) 552, 624, 754, 824, 1011
BlpI GCTNAGC 2 cut(s) 69, 1445
BlsI GCNGC 5 cut(s) 553, 625, 755, 825, 1012
Bme1390I CCNGG 1 cut(s) 1082
BmeT110I CYCGRG 1 cut(s) 1967
BmiI GGNNCC 2 cut(s) 563, 1179
BmrFI CCNGG 1 cut(s) 1082
BmrI ACTGGG 3 cut(s) 410, 637, 1863
BmsI GCATC 8 cut(s) 412, 509, 649, 991, 1228, 1503, 1869, 2004
BmuI ACTGGG 3 cut(s) 410, 637, 1863
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpmI CTGGAG 1 cut(s) 1650
Bpu10I CCTNAGC 3 cut(s) 528, 741, 1005
Bpu1102I GCTNAGC 2 cut(s) 69, 1445
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 1178
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 375, 1193, 1305, 1920
Bsc4I CCNNNNNNNGG 1 cut(s) 1624
Bse1I ACTGG 3 cut(s) 416, 643, 1858
Bse3DI GCAATG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 4 cut(s) 375, 1193, 1305, 1920
BseGI GGATG 6 cut(s) 16, 500, 1006, 1249, 1386, 2040
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 1624
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 6 cut(s) 83, 519, 732, 996, 1459, 1800
BseNI ACTGG 3 cut(s) 416, 643, 1858
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 538, 765, 810, 1022
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 3 cut(s) 243, 263, 1198
BshNI GGYRCC 1 cut(s) 1177
BsiHKAI GWGCWC 1 cut(s) 1718
BsiHKCI CYCGRG 1 cut(s) 1967
BslI CCNNNNNNNGG 1 cut(s) 1624
BsmAI GTCTC 3 cut(s) 34, 278, 1899
BsnI GGCC 3 cut(s) 243, 263, 1198
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 1967
Bsp1286I GDGCHC 2 cut(s) 1718, 1753
Bsp1407I TGTACA 3 cut(s) 1144, 1472, 1537
Bsp1720I GCTNAGC 2 cut(s) 69, 1445
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 4 cut(s) 88, 623, 1241, 1709
BspANI GGCC 3 cut(s) 243, 263, 1198
BspCNI CTCAG 6 cut(s) 82, 520, 733, 997, 1458, 1801
BspHI TCATGA 2 cut(s) 352, 1573
BspLI GGNNCC 2 cut(s) 563, 1179
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 1873
BspPI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
BspQI GCTCTTC 1 cut(s) 1853
BspT107I GGYRCC 1 cut(s) 1177
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 778
BsrGI TGTACA 3 cut(s) 1144, 1472, 1537
BsrI ACTGG 3 cut(s) 416, 643, 1858
BssECI CCNNGG 4 cut(s) 375, 1193, 1305, 1920
BssNAI GTATAC 2 cut(s) 540, 1951
BssNI GRCGYC 1 cut(s) 1178
BssT1I CCWWGG 3 cut(s) 375, 1305, 1920
Bst1107I GTATAC 2 cut(s) 540, 1951
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 8 cut(s) 251, 257, 566, 904, 1501, 1660, 1910, 1962
Bst6I CTCTTC 3 cut(s) 376, 442, 1853
BstACI GRCGYC 1 cut(s) 1178
BstAUI TGTACA 3 cut(s) 1144, 1472, 1537
BstC8I GCNNGC 2 cut(s) 245, 265
BstDEI CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1809
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 6 cut(s) 16, 500, 1006, 1249, 1386, 2040
BstH2I RGCGCY 1 cut(s) 1181
BstHHI GCGC 3 cut(s) 1180, 1444, 2041
BstMAI GTCTC 3 cut(s) 34, 278, 1899
BstMWI GCNNNNNNNGC 2 cut(s) 1010, 1286
BstNI CCWGG 1 cut(s) 1082
BstSCI CCNGG 1 cut(s) 1080
BstSFI CTRYAG 2 cut(s) 39, 633
BstV1I GCAGC 4 cut(s) 538, 765, 810, 1022
BstX2I RGATCY 3 cut(s) 184, 670, 811
BstYI RGATCY 3 cut(s) 184, 670, 811
BstZ17I GTATAC 2 cut(s) 540, 1951
BsuRI GGCC 3 cut(s) 243, 263, 1198
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 6 cut(s) 16, 500, 1006, 1249, 1386, 2040
BtsI GCAGTG 2 cut(s) 48, 768
BtsIMutI CAGTG 4 cut(s) 48, 256, 768, 1506
BveI ACCTGC 1 cut(s) 1873
Cac8I GCNNGC 2 cut(s) 245, 265
CaiI CAGNNNCTG 1 cut(s) 826
CciI TCATGA 2 cut(s) 352, 1573
CfoI GCGC 3 cut(s) 1180, 1444, 2041
Csp6I GTAC 4 cut(s) 493, 1145, 1473, 1538
CviQI GTAC 4 cut(s) 493, 1145, 1473, 1538
DdeI CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1809
DinI GGCGCC 1 cut(s) 1179
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 376, 442, 1853
EarI CTCTTC 3 cut(s) 376, 442, 1853
Eco130I CCWWGG 3 cut(s) 375, 1305, 1920
Eco24I GRGCYC 1 cut(s) 1753
Eco31I GGTCTC 1 cut(s) 278
Eco57I CTGAAG 5 cut(s) 111, 426, 494, 1296, 1995
Eco88I CYCGRG 1 cut(s) 1967
EcoRI GAATTC 1 cut(s) 1822
EcoRII CCWGG 1 cut(s) 1080
EcoT14I CCWWGG 3 cut(s) 375, 1305, 1920
EcoT22I ATGCAT 2 cut(s) 1518, 2019
EcoT38I GRGCYC 1 cut(s) 1753
EgeI GGCGCC 1 cut(s) 1179
EheI GGCGCC 1 cut(s) 1179
ErhI CCWWGG 3 cut(s) 375, 1305, 1920
FalI AAGNNNNNCTT 2 cut(s) 1069, 1101
FauI CCCGC 1 cut(s) 1702
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 3 cut(s) 150, 1570, 1774
FblI GTMKAC 3 cut(s) 132, 539, 1950
Fnu4HI GCNGC 5 cut(s) 552, 624, 754, 824, 1011
FokI GGATG 6 cut(s) 23, 487, 1013, 1256, 1373, 2047
FriOI GRGCYC 1 cut(s) 1753
Fsp4HI GCNGC 5 cut(s) 552, 624, 754, 824, 1011
FspBI CTAG 3 cut(s) 909, 984, 1089
GlaI GCGC 3 cut(s) 1179, 1443, 2040
GluI GCNGC 5 cut(s) 552, 624, 754, 824, 1011
GsuI CTGGAG 1 cut(s) 1650
HaeII RGCGCY 1 cut(s) 1181
HaeIII GGCC 3 cut(s) 243, 263, 1198
HhaI GCGC 3 cut(s) 1180, 1444, 2041
Hin1I GRCGYC 1 cut(s) 1178
Hin6I GCGC 3 cut(s) 1178, 1442, 2039
HinP1I GCGC 3 cut(s) 1178, 1442, 2039
HincII GTYRAC 2 cut(s) 172, 1692
HindII GTYRAC 2 cut(s) 172, 1692
HindIII AAGCTT 2 cut(s) 968, 1941
HphI GGTGA 4 cut(s) 602, 639, 845, 1053
Hpy166II GTNNAC 8 cut(s) 133, 172, 540, 1057, 1127, 1473, 1692, 1951
Hpy188III TCNNGA 8 cut(s) 353, 668, 800, 998, 1089, 1428, 1574, 1799
Hpy8I GTNNAC 8 cut(s) 133, 172, 540, 1057, 1127, 1473, 1692, 1951
HpyAV CCTTC 3 cut(s) 830, 1209, 1842
HpyCH4III ACNGT 8 cut(s) 251, 257, 566, 904, 1501, 1660, 1910, 1962
HpyCH4IV ACGT 3 cut(s) 536, 1557, 1845
HpyF10VI GCNNNNNNNGC 2 cut(s) 1010, 1286
HpyF3I CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1809
HpySE526I ACGT 3 cut(s) 536, 1557, 1845
Hsp92I GRCGYC 1 cut(s) 1178
HspAI GCGC 3 cut(s) 1178, 1442, 2039
KasI GGCGCC 1 cut(s) 1177
Ksp22I TGATCA 3 cut(s) 150, 1570, 1774
LguI GCTCTTC 1 cut(s) 1853
Lsp1109I GCAGC 4 cut(s) 538, 765, 810, 1022
LweI GCATC 8 cut(s) 412, 509, 649, 991, 1228, 1503, 1869, 2004
MaeI CTAG 3 cut(s) 909, 984, 1089
MaeII ACGT 3 cut(s) 536, 1557, 1845
MaeIII GTNAC 7 cut(s) 251, 645, 745, 927, 1433, 1735, 1849
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 3 cut(s) 184, 670, 811
MhlI GDGCHC 2 cut(s) 1718, 1753
MlsI TGGCCA 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 1178
MlyI GAGTC 4 cut(s) 36, 1040, 1052, 1633
MmeI TCCRAC 4 cut(s) 195, 539, 1049, 1642
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 1518, 2019
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 371, 1215, 1356
MslI CAYNNNNRTG 2 cut(s) 999, 1782
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 3 cut(s) 551, 823, 1013
MspR9I CCNGG 1 cut(s) 1082
MunI CAATTG 1 cut(s) 1209
MvaI CCWGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 2 cut(s) 1010, 1286
NarI GGCGCC 1 cut(s) 1178
NcoI CCATGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 563, 1179
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 2 cut(s) 251, 645
NsiI ATGCAT 2 cut(s) 1518, 2019
PaeR7I CTCGAG 1 cut(s) 1967
PagI TCATGA 2 cut(s) 352, 1573
PciSI GCTCTTC 1 cut(s) 1853
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 6 cut(s) 143, 218, 718, 1168, 1271, 1478
PkrI GCNGC 5 cut(s) 553, 625, 755, 825, 1012
PleI GAGTC 4 cut(s) 35, 1040, 1052, 1633
PluTI GGCGCC 1 cut(s) 1181
PpsI GAGTC 4 cut(s) 35, 1040, 1052, 1633
Psp6I CCWGG 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 2 cut(s) 563, 1179
PspXI VCTCGAGB 1 cut(s) 1967
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 826
PsuI RGATCY 3 cut(s) 184, 670, 811
PvuII CAGCTG 3 cut(s) 551, 823, 1013
RsaI GTAC 4 cut(s) 494, 1146, 1474, 1539
RsaNI GTAC 4 cut(s) 493, 1145, 1473, 1538
RseI CAYNNNNRTG 2 cut(s) 999, 1782
SapI GCTCTTC 1 cut(s) 1853
SaqAI TTAA 3 cut(s) 371, 1215, 1356
SatI GCNGC 5 cut(s) 552, 624, 754, 824, 1011
SchI GAGTC 4 cut(s) 36, 1040, 1052, 1633
ScrFI CCNGG 1 cut(s) 1082
SduI GDGCHC 2 cut(s) 1718, 1753
SfaNI GCATC 8 cut(s) 412, 509, 649, 991, 1228, 1503, 1869, 2004
SfcI CTRYAG 2 cut(s) 39, 633
SfoI GGCGCC 1 cut(s) 1179
Sfr274I CTCGAG 1 cut(s) 1967
SlaI CTCGAG 1 cut(s) 1967
SmiMI CAYNNNNRTG 2 cut(s) 999, 1782
SmlI CTYRAG 1 cut(s) 1967
SmoI CTYRAG 1 cut(s) 1967
SsiI CCGC 4 cut(s) 88, 623, 1241, 1709
SspDI GGCGCC 1 cut(s) 1177
SspMI CTAG 3 cut(s) 909, 984, 1089
StyD4I CCNGG 1 cut(s) 1080
StyI CCWWGG 3 cut(s) 375, 1305, 1920
TaaI ACNGT 8 cut(s) 251, 257, 566, 904, 1501, 1660, 1910, 1962
TaiI ACGT 3 cut(s) 539, 1560, 1848
TaqI TCGA 4 cut(s) 320, 1704, 1718, 1968
TatI WGTACW 4 cut(s) 492, 1144, 1472, 1537
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 6 cut(s) 143, 218, 718, 1168, 1271, 1478
Tru1I TTAA 3 cut(s) 371, 1215, 1356
Tru9I TTAA 3 cut(s) 371, 1215, 1356
TscAI CASTG 4 cut(s) 48, 256, 768, 1506
TseFI GTSAC 2 cut(s) 251, 645
TseI GCWGC 4 cut(s) 551, 753, 823, 1010
Tsp45I GTSAC 2 cut(s) 251, 645
TspGWI ACGGA 3 cut(s) 901, 1161, 1709
TspRI CASTG 4 cut(s) 48, 256, 768, 1506
XapI RAATTY 5 cut(s) 205, 429, 451, 1769, 1822
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 2 cut(s) 555, 1625
XhoI CTCGAG 1 cut(s) 1967
XmiI GTMKAC 3 cut(s) 132, 539, 1950
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 3 cut(s) 909, 984, 1089
Zsp2I ATGCAT 2 cut(s) 1518, 2019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.