Rh7CG090600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003274
Physical Location & Seq
Reverse (-)
6811568 .. 6815871
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG090600.1

Sequence Viewer

Length: 1683 bp
ATGGGAAGAGAAACGCCATTCACTTCAAGTTCCACAGACCCAGTAGATGCTGGAATTTTCTCTTCTTCAGCAGTAAATTCTGTGGCGACTTCATATGAGTTTCCGATGTCAGTTATGTACTCTGCATCCATGCTTCAGAGTTATTCTCAACCTGAGCTAACGTATACTACACCAGCTGCAAGTTGGAACCGTAGTAATTTGACAATGACTTTTGGTGAGGTTAGTTTGACAAAATATGATCCTTGTGCGGATAATTCTACAGCTTCCCAGTCACCAAGATACGATGCTTTTCTGGATCTGGGGCTTGGTTCATCAGATACCAGAATAACTTTTTCTCCCTTGAATCCCATTTTGTCAAAAAATGCTGAGGTTACAGGCAGCTTTGCAGTGAAATGCAATGATAATTCTTCTAAATACAGTCCTCCTGACATAATGGATCTTCATCAGCTGCTGTATGGTGAAGGCAAAAAGACTGACCATGATAAAAGTCCGAGTGATAAAGGAAACGAACGGAAATGTGGAAAAACTGTATCTAGTGAGGGTTCAGACCCATTACTAACGGATAAGTCTGATCCACAAATCACTTTAGAGAAGCTTTATGATAAATGTAGTTCGGAACATCAGGATGCTGAGGCAGCTGTTTCTCTTTCAACAAAGTTAGATGGGAACGACTCTGATGTGGACTCACCTTGTTGGAGAGGAAGCCTGGCTTCTAGACAAACTCCACTTGGAGTTTCAAGGTCTTTGAGTTCACACTCTATTGAAAATGTACAAGAAGCAAGTTATAGTCTGAATCCGCTGGCACCTCATTTTTTTCCTCGGCCTTCTAAAGCAATTGTTAATTGCTATGCAAGTGAATGTGATGCGGATGATTTCTCATCTTTCAAAAAAAGTGAATCTGGAGCCATAGGGGCTGTTAGTTCATTCTCCAAGGAGAATACATCAGTTGATAAAGCAGGATCAAAGTCGTCATTATCGCTTAATGGAATGGGAACTCAAACTTCTAATGACATCCATGAACCAAAAATAGAATATGCCCTGCTTGATAAATCAGGAAGTTACTCTGCGCTCAGCGAGGGTATATCCAAGTTATTGTCTACAGATTCAAAAATAGATGTTTCAACAGTGCTAAATATGATGCATGATCTGTCAAGTTTTCTTGTACAAAATTGTTCAAATGACGTTTTATTGAATGATCATGACTTGATCCAGCATATAATCAATAACCTATGTATGTGCTTCCAACATAGGGCTGGAGGAAAGAGTCCAATGCCTGATTTCACTGTTTCAGGCACTCCATACTTTCCTAATAAATCAACGGAGATCATCGAGGCGGGGTGCTCGAACATGGGGTTTCAAGTAACAAAGACAGGGGCTCTTGCTGTTCCACATGAACTTGATCATCAGAATGTGGTTGGTTGTCTTGATATTACTGAGAGAATGTTGAATTCCTTTCCTTCATATAGCAACATAGTTACTGGGAAGAGCAAAGACATTATTCAGATGCAGGTCATGGGAAATGCTGTGAGAGACAGTTATTCAACCAAGGACGAGATAGACCCACAAGCTTTAGTATACAAAAAACTGTGGCTCGAGGCTGAAGCAACATTGCGTGCCATGAAGTATGAAAGATGTGTGATGCATGAAATTGGAAATGGGATGGCGCAATCTAAACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

560

Amino Acids

60.84

Weight (kDa)

5.1

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1498
AccB1I GGYRCC 1 cut(s) 802
AccI GTMKAC 3 cut(s) 164, 1097, 1575
AciI CCGC 4 cut(s) 248, 797, 866, 1334
AclWI GGATC 6 cut(s) 233, 303, 444, 566, 967, 1201
AcsI RAATTY 3 cut(s) 54, 76, 1447
AcuI CTGAAG 3 cut(s) 51, 119, 1620
AfaI GTAC 3 cut(s) 119, 771, 1164
AfiI CCNNNNNNNGG 1 cut(s) 1249
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 8 cut(s) 157, 176, 263, 381, 448, 595, 638, 1568
AluI AGCT 8 cut(s) 157, 176, 263, 381, 448, 595, 638, 1568
Alw21I GWGCWC 1 cut(s) 1343
Alw26I GTCTC 1 cut(s) 1524
AlwI GGATC 6 cut(s) 233, 303, 444, 566, 967, 1201
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 1592
AoxI GGCC 1 cut(s) 821
ApeKI GCWGC 4 cut(s) 176, 378, 448, 635
ApoI RAATTY 3 cut(s) 54, 76, 1447
AspLEI GCGC 2 cut(s) 1069, 1666
AsuHPI GGTGA 4 cut(s) 227, 264, 470, 678
AvaI CYCGRG 1 cut(s) 1592
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 1378
Bbv12I GWGCWC 1 cut(s) 1343
BbvCI CCTCAGC 2 cut(s) 366, 630
BbvI GCAGC 4 cut(s) 163, 390, 435, 647
BccI CCATC 2 cut(s) 656, 1654
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 2 cut(s) 1195, 1399
BcoDI GTCTC 1 cut(s) 1524
BfaI CTAG 2 cut(s) 534, 714
BfmI CTRYAG 2 cut(s) 258, 1098
BfuAI ACCTGC 1 cut(s) 1498
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 4 cut(s) 177, 379, 449, 636
BlpI GCTNAGC 1 cut(s) 1070
BlsI GCNGC 4 cut(s) 178, 380, 450, 637
Bme1390I CCNGG 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 1592
BmiI GGNNCC 3 cut(s) 188, 804, 904
BmrFI CCNGG 1 cut(s) 707
BmrI ACTGGG 3 cut(s) 35, 262, 1488
BmsI GCATC 8 cut(s) 37, 134, 274, 616, 853, 1128, 1494, 1629
BmuI ACTGGG 3 cut(s) 35, 262, 1488
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 2 cut(s) 921, 1275
Bpu10I CCTNAGC 3 cut(s) 153, 366, 630
Bpu1102I GCTNAGC 1 cut(s) 1070
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 818, 930, 1545
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 1249
Bse1I ACTGG 3 cut(s) 41, 268, 1483
Bse3DI GCAATG 2 cut(s) 403, 1607
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 3 cut(s) 818, 930, 1545
BseGI GGATG 5 cut(s) 125, 631, 874, 1011, 1665
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 1249
BseMI GCAATG 2 cut(s) 403, 1607
BseMII CTCAG 5 cut(s) 144, 357, 621, 1084, 1425
BseNI ACTGG 3 cut(s) 41, 268, 1483
BseXI GCAGC 4 cut(s) 163, 390, 435, 647
BshFI GGCC 1 cut(s) 823
BshNI GGYRCC 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 1343
BsiHKCI CYCGRG 1 cut(s) 1592
BslI CCNNNNNNNGG 1 cut(s) 1249
BsmAI GTCTC 1 cut(s) 1524
BsnI GGCC 1 cut(s) 823
BsoBI CYCGRG 1 cut(s) 1592
Bsp1286I GDGCHC 2 cut(s) 1343, 1378
Bsp1407I TGTACA 2 cut(s) 769, 1162
Bsp1720I GCTNAGC 1 cut(s) 1070
BspACI CCGC 4 cut(s) 248, 797, 866, 1334
BspANI GGCC 1 cut(s) 823
BspCNI CTCAG 5 cut(s) 145, 358, 622, 1083, 1426
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 188, 804, 904
BspMI ACCTGC 1 cut(s) 1498
BspPI GGATC 6 cut(s) 233, 303, 444, 566, 967, 1201
BspQI GCTCTTC 1 cut(s) 1478
BspT107I GGYRCC 1 cut(s) 802
BsrDI GCAATG 2 cut(s) 403, 1607
BsrGI TGTACA 2 cut(s) 769, 1162
BsrI ACTGG 3 cut(s) 41, 268, 1483
BssECI CCNNGG 3 cut(s) 818, 930, 1545
BssNAI GTATAC 2 cut(s) 165, 1576
BssT1I CCWWGG 2 cut(s) 930, 1545
Bst1107I GTATAC 2 cut(s) 165, 1576
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 7 cut(s) 191, 419, 529, 1126, 1285, 1535, 1587
Bst6I CTCTTC 2 cut(s) 67, 1478
BstAUI TGTACA 2 cut(s) 769, 1162
BstC8I GCNNGC 2 cut(s) 801, 1614
BstDEI CTNAG 5 cut(s) 153, 366, 630, 1070, 1434
BstF5I GGATG 5 cut(s) 125, 631, 874, 1011, 1665
BstHHI GCGC 2 cut(s) 1069, 1666
BstMAI GTCTC 1 cut(s) 1524
BstMWI GCNNNNNNNGC 2 cut(s) 635, 911
BstNI CCWGG 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 705
BstSFI CTRYAG 2 cut(s) 258, 1098
BstV1I GCAGC 4 cut(s) 163, 390, 435, 647
BstX2I RGATCY 2 cut(s) 295, 436
BstYI RGATCY 2 cut(s) 295, 436
BstZ17I GTATAC 2 cut(s) 165, 1576
BsuRI GGCC 1 cut(s) 823
BtsCI GGATG 5 cut(s) 125, 631, 874, 1011, 1665
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 393, 1131, 1281
BveI ACCTGC 1 cut(s) 1498
Cac8I GCNNGC 2 cut(s) 801, 1614
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 1198
CfoI GCGC 2 cut(s) 1069, 1666
Csp6I GTAC 3 cut(s) 118, 770, 1163
CviQI GTAC 3 cut(s) 118, 770, 1163
DdeI CTNAG 5 cut(s) 153, 366, 630, 1070, 1434
Eam1104I CTCTTC 2 cut(s) 67, 1478
EarI CTCTTC 2 cut(s) 67, 1478
Eco130I CCWWGG 2 cut(s) 930, 1545
Eco24I GRGCYC 1 cut(s) 1378
Eco57I CTGAAG 3 cut(s) 51, 119, 1620
Eco88I CYCGRG 1 cut(s) 1592
EcoRI GAATTC 1 cut(s) 1447
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 2 cut(s) 930, 1545
EcoT22I ATGCAT 2 cut(s) 1143, 1644
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 2 cut(s) 930, 1545
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FauI CCCGC 1 cut(s) 1327
FauNDI CATATG 1 cut(s) 94
FbaI TGATCA 2 cut(s) 1195, 1399
FblI GTMKAC 3 cut(s) 164, 1097, 1575
Fnu4HI GCNGC 4 cut(s) 177, 379, 449, 636
FokI GGATG 5 cut(s) 112, 638, 881, 998, 1672
FriOI GRGCYC 1 cut(s) 1378
Fsp4HI GCNGC 4 cut(s) 177, 379, 449, 636
FspBI CTAG 2 cut(s) 534, 714
GlaI GCGC 2 cut(s) 1068, 1665
GluI GCNGC 4 cut(s) 177, 379, 449, 636
GsuI CTGGAG 2 cut(s) 921, 1275
HaeIII GGCC 1 cut(s) 823
HhaI GCGC 2 cut(s) 1069, 1666
Hin6I GCGC 2 cut(s) 1067, 1664
HinP1I GCGC 2 cut(s) 1067, 1664
HindIII AAGCTT 2 cut(s) 593, 1566
HinfI GANTC 7 cut(s) 343, 671, 683, 793, 896, 1103, 1264
HphI GGTGA 4 cut(s) 227, 264, 470, 678
Hpy166II GTNNAC 5 cut(s) 165, 682, 752, 1098, 1576
Hpy188III TCNNGA 8 cut(s) 293, 425, 623, 714, 900, 1053, 1199, 1424
Hpy8I GTNNAC 5 cut(s) 165, 682, 752, 1098, 1576
HpyAV CCTTC 3 cut(s) 455, 834, 1467
HpyCH4III ACNGT 7 cut(s) 191, 419, 529, 1126, 1285, 1535, 1587
HpyCH4IV ACGT 2 cut(s) 161, 1182
HpyCH4V TGCA 8 cut(s) 125, 179, 386, 396, 851, 1141, 1507, 1642
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 911
HpyF3I CTNAG 5 cut(s) 153, 366, 630, 1070, 1434
HpySE526I ACGT 2 cut(s) 161, 1182
HspAI GCGC 2 cut(s) 1067, 1664
Ksp22I TGATCA 2 cut(s) 1195, 1399
LguI GCTCTTC 1 cut(s) 1478
LmnI GCTCC 1 cut(s) 902
Lsp1109I GCAGC 4 cut(s) 163, 390, 435, 647
LweI GCATC 8 cut(s) 37, 134, 274, 616, 853, 1128, 1494, 1629
MaeI CTAG 2 cut(s) 534, 714
MaeII ACGT 2 cut(s) 161, 1182
MaeIII GTNAC 5 cut(s) 270, 370, 1058, 1360, 1474
MboII GAAGA 6 cut(s) 18, 54, 57, 399, 431, 1495
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 2 cut(s) 295, 436
MhlI GDGCHC 2 cut(s) 1343, 1378
MlyI GAGTC 3 cut(s) 665, 677, 1273
MmeI TCCRAC 3 cut(s) 164, 674, 1267
Mph1103I ATGCAT 2 cut(s) 1143, 1644
MseI TTAA 2 cut(s) 840, 981
MslI CAYNNNNRTG 2 cut(s) 624, 1407
MspA1I CMGCKG 4 cut(s) 176, 448, 638, 799
MspR9I CCNGG 1 cut(s) 707
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 635, 911
NdeI CATATG 1 cut(s) 94
NlaIV GGNNCC 3 cut(s) 188, 804, 904
NmeAIII GCCGAG 1 cut(s) 799
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 1143, 1644
PaeR7I CTCGAG 1 cut(s) 1592
PagI TCATGA 1 cut(s) 1198
PciSI GCTCTTC 1 cut(s) 1478
PfeI GAWTC 4 cut(s) 343, 793, 896, 1103
PkrI GCNGC 4 cut(s) 178, 380, 450, 637
PleI GAGTC 3 cut(s) 665, 677, 1272
PpsI GAGTC 3 cut(s) 665, 677, 1272
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 188, 804, 904
PspXI VCTCGAGB 1 cut(s) 1592
PstNI CAGNNNCTG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 295, 436
PvuII CAGCTG 3 cut(s) 176, 448, 638
RsaI GTAC 3 cut(s) 119, 771, 1164
RsaNI GTAC 3 cut(s) 118, 770, 1163
RseI CAYNNNNRTG 2 cut(s) 624, 1407
SapI GCTCTTC 1 cut(s) 1478
SaqAI TTAA 2 cut(s) 840, 981
SatI GCNGC 4 cut(s) 177, 379, 449, 636
SchI GAGTC 3 cut(s) 665, 677, 1273
ScrFI CCNGG 1 cut(s) 707
SduI GDGCHC 2 cut(s) 1343, 1378
SfaNI GCATC 8 cut(s) 37, 134, 274, 616, 853, 1128, 1494, 1629
SfcI CTRYAG 2 cut(s) 258, 1098
Sfr274I CTCGAG 1 cut(s) 1592
SlaI CTCGAG 1 cut(s) 1592
SmiMI CAYNNNNRTG 2 cut(s) 624, 1407
SmlI CTYRAG 1 cut(s) 1592
SmoI CTYRAG 1 cut(s) 1592
SsiI CCGC 4 cut(s) 248, 797, 866, 1334
SspMI CTAG 2 cut(s) 534, 714
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 2 cut(s) 930, 1545
TaaI ACNGT 7 cut(s) 191, 419, 529, 1126, 1285, 1535, 1587
TaiI ACGT 2 cut(s) 164, 1185
TaqI TCGA 3 cut(s) 1329, 1343, 1593
TatI WGTACW 3 cut(s) 117, 769, 1162
TfiI GAWTC 4 cut(s) 343, 793, 896, 1103
Tru1I TTAA 2 cut(s) 840, 981
Tru9I TTAA 2 cut(s) 840, 981
TscAI CASTG 3 cut(s) 393, 1131, 1288
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 4 cut(s) 176, 378, 448, 635
Tsp45I GTSAC 1 cut(s) 270
TspGWI ACGGA 3 cut(s) 526, 575, 1334
TspRI CASTG 3 cut(s) 393, 1131, 1288
XapI RAATTY 3 cut(s) 54, 76, 1447
XbaI TCTAGA 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 2 cut(s) 180, 1250
XhoI CTCGAG 1 cut(s) 1592
XmiI GTMKAC 3 cut(s) 164, 1097, 1575
XspI CTAG 2 cut(s) 534, 714
Zsp2I ATGCAT 2 cut(s) 1143, 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.