Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003274

Physical Location & Seq

Genomic Coordinates Forward (+)

60160394 .. 60164554

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGATCCTTGTGCGGCTAATTCTACAGCTTCCCCAGTCACCAAGATATGATGCTTTTCCGGATCTGGGGCTTGGTTCATCAGATACCAGAATAACTTTTTCTCCTTCGAATCCCATTTTGTCAAAAAATGCTGAGGTTACAGGCAGCTTTGCAGTGAAATGCAATGATAATTCTTCTAAATACAGTCCTCCTGACATAATGGATCTTCATCAGCTGCTGTATGGTGAAGGCAAAAAGACTGACCATGATAAAAGTCCGAGTGATAAAGGAAACGAACGGAAATGTGGGAAACCTGTATCTAGTGAGGGTTCAGACCCGTTACTAACAGATAAGTCTGATCCACTAATCACTTTAGAGAAGCTTTATGATAAATCTAGTTCGGAACATCAGGATGCTGAGGCAGCTGTTTCTCTTTCAACAAAGTTAGATGGGAATGACTCTGATGTGGACTCACCTTGTTGGAGAGGAAGCCTGGCTTCTAGACAAACTCCAGTTGGAGTTCCAAGGTCTTTGAGTTCACACTCTATTGAAAATGTACAAGAAGCAAGTTATAGTCTGAATCCGCTGGCGCCTCATTTTTTTCCTCGGCCTTCTAAAGCAATTGTTAATTGCTATGCAAATGAATATGATGCGGATGATTTCTCATCTTTCAAAAAAAGTGAATCTGGATCCGTATGGGCTGTTAGTTCATTCTCCAAGGAGAATACATCTGTTGATAAAGCAGGATCAAAGTCGTCATTATCGCTTAATGGAATGGGAACTCAAACTTCTAATGACATCCATGAACCAAAAAGAGAATATGCCCTGCTTGATAAATCAGGAAGTTACTCTGCGCTCAGCGAGGGTATATCCAAGTTATTGTCTACAGATTCAAAAATAGATGTTTCAACAGTGCTAAATATGATGCATGATCTGTCAAGTTTTCTTGTACAAAATTGTTCAAATGACGTTTTATTGAATGATCATGACTTGATCCAGCATATAATCAATAACCTATGTATGTGCTTCCAACATAGGGCTGGAGGAAAGGCTCCAATGCCTGATTTTACTGTTTCAGGCACTCCATACTTTCCTAATAAGTCAACAGAGATCATCGAGGCGGGGTGCTCGAACATGGGGTTTCAAGTAACAAAGACAAGGGCTCTTGCTGTTCCACATGAACTTGATCATCAGAATGTGGTTGGTTGTCTTGATATAACTGAGAGAATGTTGAATTCCTTTCCTTCATATAGCAACATAGTTACTGGGAAGAGCAAAGACATTATTCAGATGCAGGTCATTGGAAATGCTGTGAGAGACAGTTATTCAACCAAGGACGAGATAGACCCACAAGCTTTAGTATACAAAAAACTGTGGCTCGAGGCTGAAGCAACATTGCGTGCCATGAAGTATGAAAGATGTGTGATGCATGAAATTGGAAGTGGGATGGCGCAATCTAAACAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

482

Amino Acids

52.8

Weight (kDa)

5.58

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390 FvH4_5g10390
malus_domestica	MD06G1124500.v1.1
prunus_persica	Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1 Prupe.5G135100_v2.0.a1
pyrus_communis	pycom06g11490 pycom14g11660
rosa_chinensis	RchiOBHm_Chr7g0187831
rosa_laevigata	RLG00000004753
rosa_multiflora	Rmu_sc0004483.1_g000042
rosa_roxburghii	Rroxscaffold_3G00267020
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7AG089900 Rh7BG091500 Rh7CG090600 Rh7DG092300
rosa_wichuraiana	Rw7G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1264
AccB1I	GGYRCC	1 cut(s)	568
AccI	GTMKAC	2 cut(s)	863, 1341
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	4 cut(s)	13, 563, 632, 1100
AclWI	GGATC	7 cut(s)	69, 210, 332, 663, 676, 733, 967
AcsI	RAATTY	1 cut(s)	1213
AcuI	CTGAAG	1 cut(s)	1386
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	537, 930
AfiI	CCNNNNNNNGG	2 cut(s)	65, 1015
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	6 cut(s)	28, 147, 214, 361, 404, 1334
AluI	AGCT	6 cut(s)	28, 147, 214, 361, 404, 1334
Alw21I	GWGCWC	1 cut(s)	1109
Alw26I	GTCTC	1 cut(s)	1290
AlwI	GGATC	7 cut(s)	69, 210, 332, 663, 676, 733, 967
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	1358
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	3 cut(s)	144, 214, 401
ApoI	RAATTY	1 cut(s)	1213
AspLEI	GCGC	3 cut(s)	571, 835, 1432
AsuHPI	GGTGA	3 cut(s)	30, 236, 444
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	1358
BamHI	GGATCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	1144
Bbv12I	GWGCWC	1 cut(s)	1109
BbvCI	CCTCAGC	2 cut(s)	132, 396
BbvI	GCAGC	3 cut(s)	156, 201, 413
BccI	CCATC	2 cut(s)	422, 1420
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	2 cut(s)	961, 1165
BcoDI	GTCTC	1 cut(s)	1290
BfaI	CTAG	3 cut(s)	300, 375, 480
BfmI	CTRYAG	2 cut(s)	23, 864
BfoI	RGCGCY	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	1264
BisI	GCNGC	4 cut(s)	14, 145, 215, 402
BlpI	GCTNAGC	1 cut(s)	836
BlsI	GCNGC	4 cut(s)	15, 146, 216, 403
Bme1390I	CCNGG	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	1358
BmiI	GGNNCC	3 cut(s)	570, 670, 1032
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	2 cut(s)	28, 1254
BmsI	GCATC	6 cut(s)	40, 382, 619, 894, 1260, 1395
BmuI	ACTGGG	2 cut(s)	28, 1254
BpmI	CTGGAG	2 cut(s)	474, 1041
Bpu10I	CCTNAGC	2 cut(s)	132, 396
Bpu1102I	GCTNAGC	1 cut(s)	836
Bpu14I	TTCGAA	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	503, 584, 696, 1311
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 1015
Bse1I	ACTGG	3 cut(s)	34, 491, 1249
Bse3DI	GCAATG	2 cut(s)	169, 1373
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	4 cut(s)	503, 584, 696, 1311
BseGI	GGATG	4 cut(s)	397, 640, 777, 1431
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	65, 1015
BseMI	GCAATG	2 cut(s)	169, 1373
BseMII	CTCAG	4 cut(s)	123, 387, 850, 1191
BseNI	ACTGG	3 cut(s)	34, 491, 1249
BseXI	GCAGC	3 cut(s)	156, 201, 413
BshFI	GGCC	1 cut(s)	589
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	1109
BsiHKCI	CYCGRG	1 cut(s)	1358
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	65, 1015
BsmAI	GTCTC	1 cut(s)	1290
BsnI	GGCC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	1358
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	1109, 1144
Bsp13I	TCCGGA	1 cut(s)	58
Bsp1407I	TGTACA	2 cut(s)	535, 928
Bsp1720I	GCTNAGC	1 cut(s)	836
BspACI	CCGC	4 cut(s)	13, 563, 632, 1100
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	4 cut(s)	124, 388, 849, 1192
BspEI	TCCGGA	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	3 cut(s)	570, 670, 1032
BspMI	ACCTGC	1 cut(s)	1264
BspPI	GGATC	7 cut(s)	69, 210, 332, 663, 676, 733, 967
BspQI	GCTCTTC	1 cut(s)	1244
BspT104I	TTCGAA	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	169, 1373
BsrGI	TGTACA	2 cut(s)	535, 928
BsrI	ACTGG	3 cut(s)	34, 491, 1249
BssECI	CCNNGG	4 cut(s)	503, 584, 696, 1311
BssNAI	GTATAC	1 cut(s)	1342
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	3 cut(s)	503, 696, 1311
Bst1107I	GTATAC	1 cut(s)	1342
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	5 cut(s)	185, 892, 1051, 1301, 1353
Bst6I	CTCTTC	1 cut(s)	1244
BstACI	GRCGYC	1 cut(s)	569
BstAUI	TGTACA	2 cut(s)	535, 928
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	567, 1380
BstDEI	CTNAG	4 cut(s)	132, 396, 836, 1200
BstF5I	GGATG	4 cut(s)	397, 640, 777, 1431
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	3 cut(s)	571, 835, 1432
BstMAI	GTCTC	1 cut(s)	1290
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstSFI	CTRYAG	2 cut(s)	23, 864
BstV1I	GCAGC	3 cut(s)	156, 201, 413
BstX2I	RGATCY	3 cut(s)	61, 202, 668
BstYI	RGATCY	3 cut(s)	61, 202, 668
BstZ17I	GTATAC	1 cut(s)	1342
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	397, 640, 777, 1431
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 897
BveI	ACCTGC	1 cut(s)	1264
Cac8I	GCNNGC	2 cut(s)	567, 1380
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	3 cut(s)	571, 835, 1432
Csp6I	GTAC	2 cut(s)	536, 929
CviAII	CATG	8 cut(s)	245, 782, 908, 965, 1114, 1157, 1384, 1409
CviQI	GTAC	2 cut(s)	536, 929
DdeI	CTNAG	4 cut(s)	132, 396, 836, 1200
DinI	GGCGCC	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	1244
EarI	CTCTTC	1 cut(s)	1244
Eco130I	CCWWGG	3 cut(s)	503, 696, 1311
Eco24I	GRGCYC	1 cut(s)	1144
Eco57I	CTGAAG	1 cut(s)	1386
Eco88I	CYCGRG	1 cut(s)	1358
EcoRI	GAATTC	1 cut(s)	1213
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	3 cut(s)	503, 696, 1311
EcoT22I	ATGCAT	2 cut(s)	909, 1410
EcoT38I	GRGCYC	1 cut(s)	1144
EgeI	GGCGCC	1 cut(s)	570
EheI	GGCGCC	1 cut(s)	570
ErhI	CCWWGG	3 cut(s)	503, 696, 1311
FaeI	CATG	8 cut(s)	248, 785, 911, 968, 1117, 1160, 1387, 1412
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FatI	CATG	8 cut(s)	244, 781, 907, 964, 1113, 1156, 1383, 1408
FauI	CCCGC	1 cut(s)	1093
FbaI	TGATCA	2 cut(s)	961, 1165
FblI	GTMKAC	2 cut(s)	863, 1341
Fnu4HI	GCNGC	4 cut(s)	14, 145, 215, 402
FokI	GGATG	4 cut(s)	404, 647, 764, 1438
FriOI	GRGCYC	1 cut(s)	1144
Fsp4HI	GCNGC	4 cut(s)	14, 145, 215, 402
FspBI	CTAG	3 cut(s)	300, 375, 480
GlaI	GCGC	3 cut(s)	570, 834, 1431
GluI	GCNGC	4 cut(s)	14, 145, 215, 402
GsuI	CTGGAG	2 cut(s)	474, 1041
HaeII	RGCGCY	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	3 cut(s)	571, 835, 1432
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	8 cut(s)	248, 785, 911, 968, 1117, 1160, 1387, 1412
Hin6I	GCGC	3 cut(s)	569, 833, 1430
HinP1I	GCGC	3 cut(s)	569, 833, 1430
HincII	GTYRAC	1 cut(s)	1083
HindII	GTYRAC	1 cut(s)	1083
HindIII	AAGCTT	2 cut(s)	359, 1332
HinfI	GANTC	6 cut(s)	109, 437, 449, 559, 662, 869
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	3 cut(s)	30, 236, 444
Hpy166II	GTNNAC	5 cut(s)	448, 518, 864, 1083, 1342
Hpy188I	TCNGA	9 cut(s)	82, 258, 313, 337, 382, 442, 558, 1173, 1269
Hpy188III	TCNNGA	8 cut(s)	59, 191, 389, 480, 666, 819, 965, 1190
Hpy8I	GTNNAC	5 cut(s)	448, 518, 864, 1083, 1342
HpyAV	CCTTC	4 cut(s)	114, 221, 600, 1233
HpyCH4III	ACNGT	5 cut(s)	185, 892, 1051, 1301, 1353
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	6 cut(s)	152, 162, 617, 907, 1273, 1408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	132, 396, 836, 1200
HpySE526I	ACGT	1 cut(s)	948
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	8 cut(s)	248, 785, 911, 968, 1117, 1160, 1387, 1412
HspAI	GCGC	3 cut(s)	569, 833, 1430
KasI	GGCGCC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	58
Ksp22I	TGATCA	2 cut(s)	961, 1165
LguI	GCTCTTC	1 cut(s)	1244
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	3 cut(s)	156, 201, 413
LweI	GCATC	6 cut(s)	40, 382, 619, 894, 1260, 1395
MaeI	CTAG	3 cut(s)	300, 375, 480
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	6 cut(s)	36, 136, 318, 824, 1126, 1240
MboII	GAAGA	3 cut(s)	165, 197, 1261
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	3 cut(s)	61, 202, 668
MhlI	GDGCHC	2 cut(s)	1109, 1144
MluCI	AATT	7 cut(s)	18, 169, 600, 607, 934, 1213, 1413
Mly113I	GGCGCC	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	431, 443
MmeI	TCCRAC	3 cut(s)	440, 475, 1033
Mph1103I	ATGCAT	2 cut(s)	909, 1410
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	2 cut(s)	606, 747
MslI	CAYNNNNRTG	2 cut(s)	390, 1173
MspA1I	CMGCKG	3 cut(s)	214, 404, 565
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	473
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	401
NarI	GGCGCC	1 cut(s)	569
NlaIII	CATG	8 cut(s)	248, 785, 911, 968, 1117, 1160, 1387, 1412
NlaIV	GGNNCC	3 cut(s)	570, 670, 1032
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	36
NsiI	ATGCAT	2 cut(s)	909, 1410
NspV	TTCGAA	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	1358
PagI	TCATGA	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	1244
PfeI	GAWTC	4 cut(s)	109, 559, 662, 869
PkrI	GCNGC	4 cut(s)	15, 146, 216, 403
PleI	GAGTC	2 cut(s)	431, 443
PluTI	GGCGCC	1 cut(s)	572
PpsI	GAGTC	2 cut(s)	431, 443
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	3 cut(s)	570, 670, 1032
PspXI	VCTCGAGB	1 cut(s)	1358
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	61, 202, 668
PvuII	CAGCTG	2 cut(s)	214, 404
RsaI	GTAC	2 cut(s)	537, 930
RsaNI	GTAC	2 cut(s)	536, 929
RseI	CAYNNNNRTG	2 cut(s)	390, 1173
SapI	GCTCTTC	1 cut(s)	1244
SaqAI	TTAA	2 cut(s)	606, 747
SatI	GCNGC	4 cut(s)	14, 145, 215, 402
SchI	GAGTC	2 cut(s)	431, 443
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	1109, 1144
SfaNI	GCATC	6 cut(s)	40, 382, 619, 894, 1260, 1395
SfcI	CTRYAG	2 cut(s)	23, 864
SfoI	GGCGCC	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	1358
SfuI	TTCGAA	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	1358
SmiMI	CAYNNNNRTG	2 cut(s)	390, 1173
SmlI	CTYRAG	1 cut(s)	1358
SmoI	CTYRAG	1 cut(s)	1358
Sse9I	AATT	7 cut(s)	18, 169, 600, 607, 934, 1213, 1413
SsiI	CCGC	4 cut(s)	13, 563, 632, 1100
SspDI	GGCGCC	1 cut(s)	568
SspMI	CTAG	3 cut(s)	300, 375, 480
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	3 cut(s)	503, 696, 1311
TaaI	ACNGT	5 cut(s)	185, 892, 1051, 1301, 1353
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	4 cut(s)	107, 1095, 1109, 1359
TasI	AATT	7 cut(s)	18, 169, 600, 607, 934, 1213, 1413
TatI	WGTACW	2 cut(s)	535, 928
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	4 cut(s)	109, 559, 662, 869
Tru1I	TTAA	2 cut(s)	606, 747
Tru9I	TTAA	2 cut(s)	606, 747
TscAI	CASTG	2 cut(s)	159, 897
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	3 cut(s)	144, 214, 401
Tsp45I	GTSAC	1 cut(s)	36
TspGWI	ACGGA	2 cut(s)	292, 661
TspRI	CASTG	2 cut(s)	159, 897
XapI	RAATTY	1 cut(s)	1213
XbaI	TCTAGA	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XhoI	CTCGAG	1 cut(s)	1358
XmiI	GTMKAC	2 cut(s)	863, 1341
XspI	CTAG	3 cut(s)	300, 375, 480
Zsp2I	ATGCAT	2 cut(s)	909, 1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.