Rorug06G0484700

Heavy metal-associated isoprenylated plant protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
60461157 .. 60461882
726 bp
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UTR
Exon/CDS
Intron
Rorug06G0484700.1

Sequence Viewer

Length: 234 bp
ATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTTATGAGGTGGTGCCACCCCAAGATTCCGAAAAACGTAACACCTGCTCCGACCAGTCTGCTTTTGTAGAGGGTCTTTCTAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTTTCAGAGGCCAAGGGGTTCGCAGTGTGTGA

Protein Analysis

77

Amino Acids

8.47

Weight (kDa)

4.89

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 156
AjnI CCWGG 1 cut(s) 192
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 2 cut(s) 126, 211
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 57, 191
BmrFI CCNGG 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 152, 193, 214
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 152, 193, 214
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 97
BshFI GGCC 2 cut(s) 128, 213
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 2 cut(s) 128, 213
Bsp1286I GDGCHC 1 cut(s) 178
BspANI GGCC 2 cut(s) 128, 213
BspLI GGNNCC 2 cut(s) 57, 191
BspMI ACCTGC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 152, 193, 214
BssT1I CCWWGG 2 cut(s) 152, 214
Bst2UI CCWGG 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 123
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 128, 213
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 95
CviJI RGCY 2 cut(s) 128, 213
CviKI_1 RGCY 2 cut(s) 128, 213
DdeI CTNAG 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 152, 214
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 152, 214
ErhI CCWWGG 2 cut(s) 152, 214
FaiI YATR 4 cut(s) 6, 30, 48, 201
FaqI GGGAC 1 cut(s) 178
HaeIII GGCC 2 cut(s) 128, 213
HinfI GANTC 5 cut(s) 23, 35, 68, 146, 166
Hpy188I TCNGA 3 cut(s) 73, 94, 209
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 79
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 5 cut(s) 100, 110, 128, 179, 206
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 29, 160
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 43, 106, 148, 150, 203
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 57, 191
PaqCI CACCTGC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 23, 68, 146
PleI GAGTC 2 cut(s) 29, 160
PpsI GAGTC 2 cut(s) 29, 160
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 57, 191
SchI GAGTC 2 cut(s) 29, 160
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 54, 82, 89, 195
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 2 cut(s) 152, 214
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 178
TfiI GAWTC 3 cut(s) 23, 68, 146
TscAI CASTG 1 cut(s) 232
TspRI CASTG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.