Rh7BG091500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003274
Physical Location & Seq
Reverse (-)
6758446 .. 6762547
4102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG091500.1

Sequence Viewer

Length: 1764 bp
ATGGAGGAGGATGGTCATGGAAAGAGAGTCTCATCTTCTGCAGTGTCCTCTCGTTTGTCAGCTAAAGCTCAGCCCTTTAGATTGAACCGCTTTACTGCCCAACCCACTTGGACCTCTTCATTGACTTCAGTAGACCCTTGTGATTCCTTGATCAAATCCTTGTCTAATGTCAACTTGGAAGAAGATCCATTACCATCTGCATCGAATTTCGGGTTGGATTCATTACAGGGTTCATGGTTTGGCCAGCACAGTGACAGTTTGGCCTACACCAACTATGCTTACGAGACCTTGCTTGAACAAGGAAAGCCTGTAAAAAAATCGAAACTCTATGATGAAAACTCTGAAAGTGTTCATGAGAAATGCAGTTATTTAACCATGGGAAGAGAAACGCCATTCACTTCAAGTTCCACAGACCCAGTAGATGCTGGAATTTTCTCTTCTTCAGCAGTAAATTCTGTGGCGACTTCATATGAGTTTCCGATGTCAGTTATATACTCTGCATCCATGCTTCAGAGTTATTCTCAACCTGAGCTAACATATACTACAGCAGCTGCAAGTTGGAACCGTAGTAATTCGACAATGACCTTTGGTGAGGTTGGTTTGACAAAATATGATCCTTGTGCGGCTAATTCTACAGCTTCCCAGTCACCAAGATACGATGCTTTTCCGGATCTGGGGCTTGGTTCATCAGATACCAGAATAACTTTATCTCCCATGAATCCCATTTTGTCAAAAAATGCTGAGGTTACAGGCAGCTTTGCAGTGAAATGCAATGATAATTCTTCTAAATACAGTCCTCCTGACATAATGGATCTTCATCAGCTGCTGTATGGTGAAGGCAAAAAGACTGACCATGATAAAAGTCCGAGTGATAAAGGAAACGAACGGAAATGTGGAAAACCTGTATCTAGTGAGGGTTCAGACCCGTTACTAACAGATAAGTCTGATCCACAAATCACTTTAGAGAAGTTTTATGATAAATCTAGTTCGGAACATCAGGATGCTGAGGCAGCTGTTTCTCTTTCAACAAAGTTAGATGGGAACGACTCTGATGTGGACTCACCTTGTTGGAGAGGAAGCCTGGCTTCTAGACAAACTCCACTTGGAGTTTCAAGGTCTTTGAGTTCACACTCTATTGAAAATGTACAAGAAGCAAGTTATAGTCTGAATCCGCTGGCGCCTCATTTTTTTCCTCGGCCTTCTAAAGCAATTGTTAATTGCTATGCAAATGAATATGATGCGGATGATTTCTCATCTTTCAAAAAAAGTGAATCTGGAGCCGTAGGGGCTGTTAGTTCATTCTCCAAGGAGAATACATCTGTTGATAAAGCAGGATCAAAGTTGTCATTATCACTTAATGGAATGGGAACTCAAACTTCTAATGACATCCATGAACCAAAAAGAGAATATGCCCTGCTTGATAAATCAGGAAGTTACTCTGCGCTCAGCGAGGGTATATCCAAGTTATTGTCTACAGATTCAAAAATAGATGTTTCAACAGTGCTAAATATGATGCATGATCTGTCAAGTTTTCTTGTACAAAATTGTTCAAATGACGTTTTATTGAATGATCATGACTTGATCCAGCATATAATCAATAACCTATGTATGTGCTTCCAACATAGGGCTGGAGGAAAGACTCCAATGCCTGATTTTACTGTTTCAGGCACTCCATACTTTCCTAATAAGTCAACGGAGATCATCGAGGCGGGGGTATGTGTGTCTTTTGTCCCTCTTTTGTTTTCTTCTATGCTGAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

587

Amino Acids

63.67

Weight (kDa)

5.07

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1177
AccI GTMKAC 2 cut(s) 132, 1472
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 5 cut(s) 88, 623, 1172, 1241, 1709
AclWI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 4 cut(s) 205, 429, 451, 1758
AcuI CTGAAG 3 cut(s) 111, 426, 494
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 2 cut(s) 1146, 1539
AfiI CCNNNNNNNGG 2 cut(s) 674, 1624
AjnI CCWGG 1 cut(s) 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 8 cut(s) 62, 68, 532, 551, 638, 756, 823, 1013
AluI AGCT 8 cut(s) 62, 68, 532, 551, 638, 756, 823, 1013
Alw26I GTCTC 2 cut(s) 34, 278
AlwI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
AlwNI CAGNNNCTG 2 cut(s) 551, 826
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 3 cut(s) 241, 261, 1196
ApeKI GCWGC 5 cut(s) 548, 551, 753, 823, 1010
ApoI RAATTY 4 cut(s) 205, 429, 451, 1758
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 2 cut(s) 1180, 1444
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 4 cut(s) 602, 639, 845, 1053
AvaII GGWCC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 1177
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbvCI CCTCAGC 2 cut(s) 741, 1005
BbvI GCAGC 5 cut(s) 538, 560, 765, 810, 1022
BccI CCATC 3 cut(s) 5, 202, 1031
BceAI ACGGC 1 cut(s) 1265
BciT130I CCWGG 1 cut(s) 1082
BclI TGATCA 2 cut(s) 150, 1570
BcoDI GTCTC 2 cut(s) 34, 278
BfaI CTAG 3 cut(s) 909, 984, 1089
BfmI CTRYAG 4 cut(s) 39, 543, 633, 1473
BfoI RGCGCY 1 cut(s) 1181
BglI GCCNNNNNGGC 1 cut(s) 1286
BisI GCNGC 6 cut(s) 549, 552, 624, 754, 824, 1011
BlpI GCTNAGC 2 cut(s) 69, 1445
BlsI GCNGC 6 cut(s) 550, 553, 625, 755, 825, 1012
Bme1390I CCNGG 1 cut(s) 1082
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 563, 1179, 1279
BmrFI CCNGG 1 cut(s) 1082
BmrI ACTGGG 2 cut(s) 410, 637
BmsI GCATC 7 cut(s) 209, 412, 509, 649, 991, 1228, 1503
BmuI ACTGGG 2 cut(s) 410, 637
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpmI CTGGAG 2 cut(s) 1296, 1650
Bpu10I CCTNAGC 3 cut(s) 528, 741, 1005
Bpu1102I GCTNAGC 2 cut(s) 69, 1445
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 1178
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 375, 1193, 1305
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 674, 1624
Bse1I ACTGG 2 cut(s) 416, 643
Bse3DI GCAATG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 816
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 3 cut(s) 375, 1193, 1305
BseGI GGATG 5 cut(s) 16, 500, 1006, 1249, 1386
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 674, 1624
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 6 cut(s) 83, 519, 732, 996, 1459, 1745
BseNI ACTGG 2 cut(s) 416, 643
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 5 cut(s) 538, 560, 765, 810, 1022
BshFI GGCC 3 cut(s) 243, 263, 1198
BshNI GGYRCC 1 cut(s) 1177
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 1 cut(s) 1715
BslI CCNNNNNNNGG 2 cut(s) 674, 1624
BsmAI GTCTC 2 cut(s) 34, 278
BsmFI GGGAC 1 cut(s) 1715
BsnI GGCC 3 cut(s) 243, 263, 1198
Bso31I GGTCTC 1 cut(s) 278
Bsp13I TCCGGA 1 cut(s) 667
Bsp1407I TGTACA 2 cut(s) 1144, 1537
Bsp1720I GCTNAGC 2 cut(s) 69, 1445
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 5 cut(s) 88, 623, 1172, 1241, 1709
BspANI GGCC 3 cut(s) 243, 263, 1198
BspCNI CTCAG 6 cut(s) 82, 520, 733, 997, 1458, 1746
BspEI TCCGGA 1 cut(s) 667
BspHI TCATGA 2 cut(s) 352, 1573
BspLI GGNNCC 3 cut(s) 563, 1179, 1279
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 7 cut(s) 179, 608, 678, 819, 941, 1342, 1576
BspT107I GGYRCC 1 cut(s) 1177
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 778
BsrGI TGTACA 2 cut(s) 1144, 1537
BsrI ACTGG 2 cut(s) 416, 643
BssECI CCNNGG 3 cut(s) 375, 1193, 1305
BssNI GRCGYC 1 cut(s) 1178
BssT1I CCWWGG 2 cut(s) 375, 1305
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 6 cut(s) 251, 257, 566, 794, 1501, 1660
Bst6I CTCTTC 3 cut(s) 121, 376, 442
BstACI GRCGYC 1 cut(s) 1178
BstAUI TGTACA 2 cut(s) 1144, 1537
BstC8I GCNNGC 2 cut(s) 245, 1176
BstDEI CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1754
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 5 cut(s) 16, 500, 1006, 1249, 1386
BstH2I RGCGCY 1 cut(s) 1181
BstHHI GCGC 2 cut(s) 1180, 1444
BstMAI GTCTC 2 cut(s) 34, 278
BstMWI GCNNNNNNNGC 2 cut(s) 1010, 1286
BstNI CCWGG 1 cut(s) 1082
BstSCI CCNGG 1 cut(s) 1080
BstSFI CTRYAG 4 cut(s) 39, 543, 633, 1473
BstV1I GCAGC 5 cut(s) 538, 560, 765, 810, 1022
BstX2I RGATCY 3 cut(s) 184, 670, 811
BstYI RGATCY 3 cut(s) 184, 670, 811
BsuRI GGCC 3 cut(s) 243, 263, 1198
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 5 cut(s) 16, 500, 1006, 1249, 1386
BtsI GCAGTG 2 cut(s) 48, 768
BtsIMutI CAGTG 4 cut(s) 48, 256, 768, 1506
Cac8I GCNNGC 2 cut(s) 245, 1176
CaiI CAGNNNCTG 2 cut(s) 551, 826
CciI TCATGA 2 cut(s) 352, 1573
CfoI GCGC 2 cut(s) 1180, 1444
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 1145, 1538
CviQI GTAC 2 cut(s) 1145, 1538
DdeI CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1754
DinI GGCGCC 1 cut(s) 1179
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 121, 376, 442
EarI CTCTTC 3 cut(s) 121, 376, 442
Eco130I CCWWGG 2 cut(s) 375, 1305
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 3 cut(s) 111, 426, 494
EcoRII CCWGG 1 cut(s) 1080
EcoT14I CCWWGG 2 cut(s) 375, 1305
EcoT22I ATGCAT 1 cut(s) 1518
EgeI GGCGCC 1 cut(s) 1179
EheI GGCGCC 1 cut(s) 1179
ErhI CCWWGG 2 cut(s) 375, 1305
FalI AAGNNNNNCTT 2 cut(s) 1069, 1101
FaqI GGGAC 1 cut(s) 1715
FauI CCCGC 1 cut(s) 1702
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 2 cut(s) 150, 1570
FblI GTMKAC 2 cut(s) 132, 1472
Fnu4HI GCNGC 6 cut(s) 549, 552, 624, 754, 824, 1011
FokI GGATG 5 cut(s) 23, 487, 1013, 1256, 1373
Fsp4HI GCNGC 6 cut(s) 549, 552, 624, 754, 824, 1011
FspBI CTAG 3 cut(s) 909, 984, 1089
GlaI GCGC 2 cut(s) 1179, 1443
GluI GCNGC 6 cut(s) 549, 552, 624, 754, 824, 1011
GsuI CTGGAG 2 cut(s) 1296, 1650
HaeII RGCGCY 1 cut(s) 1181
HaeIII GGCC 3 cut(s) 243, 263, 1198
HapII CCGG 1 cut(s) 668
HhaI GCGC 2 cut(s) 1180, 1444
Hin1I GRCGYC 1 cut(s) 1178
Hin6I GCGC 2 cut(s) 1178, 1442
HinP1I GCGC 2 cut(s) 1178, 1442
HincII GTYRAC 2 cut(s) 172, 1692
HindII GTYRAC 2 cut(s) 172, 1692
HpaII CCGG 1 cut(s) 668
HphI GGTGA 4 cut(s) 602, 639, 845, 1053
Hpy166II GTNNAC 6 cut(s) 133, 172, 1057, 1127, 1473, 1692
Hpy188III TCNNGA 8 cut(s) 353, 668, 800, 998, 1089, 1275, 1428, 1574
Hpy8I GTNNAC 6 cut(s) 133, 172, 1057, 1127, 1473, 1692
HpyAV CCTTC 2 cut(s) 830, 1209
HpyCH4III ACNGT 6 cut(s) 251, 257, 566, 794, 1501, 1660
HpyCH4IV ACGT 1 cut(s) 1557
HpyCH4V TGCA 9 cut(s) 41, 200, 363, 500, 554, 761, 771, 1226, 1516
HpyF10VI GCNNNNNNNGC 2 cut(s) 1010, 1286
HpyF3I CTNAG 6 cut(s) 69, 528, 741, 1005, 1445, 1754
HpySE526I ACGT 1 cut(s) 1557
Hsp92I GRCGYC 1 cut(s) 1178
HspAI GCGC 2 cut(s) 1178, 1442
KasI GGCGCC 1 cut(s) 1177
Kpn2I TCCGGA 1 cut(s) 667
Ksp22I TGATCA 2 cut(s) 150, 1570
LmnI GCTCC 1 cut(s) 1277
Lsp1109I GCAGC 5 cut(s) 538, 560, 765, 810, 1022
LweI GCATC 7 cut(s) 209, 412, 509, 649, 991, 1228, 1503
MaeI CTAG 3 cut(s) 909, 984, 1089
MaeII ACGT 1 cut(s) 1557
MaeIII GTNAC 5 cut(s) 251, 645, 745, 927, 1433
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 3 cut(s) 184, 670, 811
MlsI TGGCCA 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 1178
MlyI GAGTC 4 cut(s) 36, 1040, 1052, 1633
MmeI TCCRAC 4 cut(s) 195, 539, 1049, 1642
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 1518
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 371, 1215, 1356
MslI CAYNNNNRTG 1 cut(s) 999
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 4 cut(s) 551, 823, 1013, 1174
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 1082
MunI CAATTG 1 cut(s) 1209
MvaI CCWGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 2 cut(s) 1010, 1286
NarI GGCGCC 1 cut(s) 1178
NcoI CCATGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 469
NlaIV GGNNCC 3 cut(s) 563, 1179, 1279
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 2 cut(s) 251, 645
NsiI ATGCAT 1 cut(s) 1518
PagI TCATGA 2 cut(s) 352, 1573
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 6 cut(s) 143, 218, 718, 1168, 1271, 1478
PkrI GCNGC 6 cut(s) 550, 553, 625, 755, 825, 1012
PleI GAGTC 4 cut(s) 35, 1040, 1052, 1633
PluTI GGCGCC 1 cut(s) 1181
PpsI GAGTC 4 cut(s) 35, 1040, 1052, 1633
Psp6I CCWGG 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 3 cut(s) 563, 1179, 1279
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 2 cut(s) 551, 826
PsuI RGATCY 3 cut(s) 184, 670, 811
PvuII CAGCTG 3 cut(s) 551, 823, 1013
RsaI GTAC 2 cut(s) 1146, 1539
RsaNI GTAC 2 cut(s) 1145, 1538
RseI CAYNNNNRTG 1 cut(s) 999
SaqAI TTAA 3 cut(s) 371, 1215, 1356
SatI GCNGC 6 cut(s) 549, 552, 624, 754, 824, 1011
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 4 cut(s) 36, 1040, 1052, 1633
ScrFI CCNGG 1 cut(s) 1082
SfaNI GCATC 7 cut(s) 209, 412, 509, 649, 991, 1228, 1503
SfcI CTRYAG 4 cut(s) 39, 543, 633, 1473
SfoI GGCGCC 1 cut(s) 1179
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 999
SsiI CCGC 5 cut(s) 88, 623, 1172, 1241, 1709
SspDI GGCGCC 1 cut(s) 1177
SspMI CTAG 3 cut(s) 909, 984, 1089
StyD4I CCNGG 1 cut(s) 1080
StyI CCWWGG 2 cut(s) 375, 1305
TaaI ACNGT 6 cut(s) 251, 257, 566, 794, 1501, 1660
TaiI ACGT 1 cut(s) 1560
TaqI TCGA 4 cut(s) 203, 320, 575, 1704
TatI WGTACW 2 cut(s) 1144, 1537
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 6 cut(s) 143, 218, 718, 1168, 1271, 1478
Tru1I TTAA 3 cut(s) 371, 1215, 1356
Tru9I TTAA 3 cut(s) 371, 1215, 1356
TscAI CASTG 4 cut(s) 48, 256, 768, 1506
TseFI GTSAC 2 cut(s) 251, 645
TseI GCWGC 5 cut(s) 548, 551, 753, 823, 1010
Tsp45I GTSAC 2 cut(s) 251, 645
TspGWI ACGGA 2 cut(s) 901, 1709
TspRI CASTG 4 cut(s) 48, 256, 768, 1506
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 4 cut(s) 205, 429, 451, 1758
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 1625
XmiI GTMKAC 2 cut(s) 132, 1472
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 3 cut(s) 909, 984, 1089
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.