pycom06g11820

Fringe-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
17017235 .. 17018745
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11820.1

Sequence Viewer

Length: 1101 bp
ATGACGACGACGCCAACAACAAACCCCAACAACGGCAATCCCAGATCACCAAAAAACCGCCGTTACCGTCAGAGCCACGTGGCCACCGCCGTCATCGCCGTCGCGGCCCTCTTGATCTCCACCACCGCCTGGCTCTCCCTTGTTTTCTCCGCCACTTCGCACTCCCTCCCCGCTCCCCAGTCCTTCACCCGCTCCCAAAGCCGTACTGTTTCCCGACACAGCGGACACTCCGAGGAGCTCACTGTAAACGACATCGTTTTCGGCATTGCAGGGTCGGCCCAACTCTGGAAGCAGCGGAAAGAGTACGTCCGGCTCTGGTGGCGCCAGGACGACATGCGCGGCCACGTCTGGCTGGAAGAGAAGCTACCTGAAAACGACGTCGATCGGTCCTTGCCGCCGATGATGGTATCCGAGGACACCTCGCGGTTTCGGTACACCAACCCGACAGGTCACCCATCGGGGCTACGAATCGCCCGAATAGTCTCCGAGTGCTTCCGCCTCGGCCTCCCCAATGTCCGGTGGTTTGTTCTCGCCGACGATGACACCATCATCAACGTCGATAACCTCGTCGCCGTGCTGGGTAAGTACGACTCGTCGGAGATGGTTTATGTGGGAAGCCCGTCGGAGAGTCATTCTGCCAACACTTATTTCAGCCACTCCATGGCGTTTGGTGGCGGCGGCATTGCAATTAGCCACCCTCTGGCGGAAGCCCTGTCCGAAATGCAGGACCAGTGTCTCGAGAGGTACCCGAAGCTCTACGGGAGTGATGATCGCCTCCATGCCTGCATTACTGAACTTGGGATTCCATTAACCAGAGAACCTGGCTTCCATCAGTGTGACATTAGGGGTAATGCGCACGGTCTTTTATCTTCGCATCCTATAGCACCATTTGTGTCCATTCACCATGTTGAAGCTGTTGACCCTTTTTATCCCGGCTCTACCTCTCTGCAAAGTTTGAAGCTTTTCACACAGGCAATGAGACTCCAACCTACCAGCTTTTTGCAGCGGTCCATTTGCTATGATCGATCGACGCCGTCTCACATTTTCAGTCTCACTGGGGTATGTGGTTCAAGTATTCCCAAACATTGTGCTTCCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

40.62

Weight (kDa)

7.29

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 170 - 278 1e-18 Fringe-like
DUF604 PF04646 214 - 344 5.4e-66 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011882)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
Acc16I TGCGCA 1 cut(s) 855
Acc65I GGTACC 1 cut(s) 744
AccB1I GGYRCC 2 cut(s) 321, 744
AccB7I CCANNNNNTGG 3 cut(s) 129, 661, 700
AccBSI CCGCTC 2 cut(s) 173, 192
AccII CGCG 3 cut(s) 104, 339, 424
AcoI YGGCCR 2 cut(s) 81, 340
AcvI CACGTG 1 cut(s) 79
AcyI GRCGYC 4 cut(s) 11, 322, 378, 1031
AfaI GTAC 5 cut(s) 205, 305, 434, 587, 746
AfiI CCNNNNNNNGG 7 cut(s) 32, 129, 285, 516, 661, 700, 703
AgsI TTSAA 3 cut(s) 911, 958, 1071
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 3 cut(s) 128, 324, 820
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AloI GAACNNNNNNTCC 2 cut(s) 810, 842
AluBI AGCT 6 cut(s) 238, 364, 754, 914, 961, 996
AluI AGCT 6 cut(s) 238, 364, 754, 914, 961, 996
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 5 cut(s) 487, 740, 973, 1041, 1055
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 5 cut(s) 81, 105, 276, 340, 502
ApeKI GCWGC 2 cut(s) 292, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 962
Asp718I GGTACC 1 cut(s) 744
AspLEI GCGC 3 cut(s) 324, 339, 856
AspS9I GGNCC 5 cut(s) 106, 277, 387, 727, 1008
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 4 cut(s) 39, 178, 443, 893
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 3 cut(s) 387, 727, 1008
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 321, 744
BanII GRGCYC 1 cut(s) 240
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbrPI CACGTG 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 304, 1015
BccI CCATC 5 cut(s) 397, 463, 554, 595, 837
BceAI ACGGC 7 cut(s) 45, 49, 74, 83, 186, 557, 1018
BciT130I CCWGG 3 cut(s) 130, 326, 822
BciVI GTATCC 1 cut(s) 418
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 5 cut(s) 487, 740, 973, 1041, 1055
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 104
BisI GCNGC 7 cut(s) 105, 293, 340, 395, 676, 679, 1004
BlsI GCNGC 7 cut(s) 106, 294, 341, 396, 677, 680, 1005
Bme1390I CCNGG 4 cut(s) 130, 326, 822, 933
Bme18I GGWCC 3 cut(s) 387, 727, 1008
BmeT110I CYCGRG 1 cut(s) 737
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 5 cut(s) 106, 277, 387, 727, 1008
BmiI GGNNCC 2 cut(s) 323, 746
BmrFI CCNGG 4 cut(s) 130, 326, 822, 933
BmrI ACTGGG 2 cut(s) 172, 1065
BmsI GCATC 1 cut(s) 883
BmuI ACTGGG 2 cut(s) 172, 1065
BoxI GACNNNNGTC 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuMI CCSGG 1 cut(s) 933
Bsa29I ATCGAT 1 cut(s) 1024
BsaAI YACGTR 1 cut(s) 79
BsaHI GRCGYC 4 cut(s) 11, 322, 378, 1031
BsaJI CCNNGG 4 cut(s) 231, 411, 499, 660
BsaWI WCCGGW 1 cut(s) 516
Bsc4I CCNNNNNNNGG 7 cut(s) 32, 129, 285, 516, 661, 700, 703
Bse1I ACTGG 3 cut(s) 178, 730, 1060
Bse3DI GCAATG 3 cut(s) 264, 681, 981
BseBI CCWGG 3 cut(s) 130, 326, 822
BseCI ATCGAT 1 cut(s) 1024
BseDI CCNNGG 4 cut(s) 231, 411, 499, 660
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 7 cut(s) 32, 129, 285, 516, 661, 700, 703
BseMI GCAATG 3 cut(s) 264, 681, 981
BseNI ACTGG 3 cut(s) 178, 730, 1060
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 304, 1015
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 3 cut(s) 104, 339, 424
Bsh1285I CGRYCG 2 cut(s) 385, 1028
BshFI GGCC 5 cut(s) 83, 107, 278, 342, 504
BshNI GGYRCC 2 cut(s) 321, 744
BshVI ATCGAT 1 cut(s) 1024
BsiEI CGRYCG 2 cut(s) 385, 1028
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 3 cut(s) 310, 517, 933
BslI CCNNNNNNNGG 7 cut(s) 32, 129, 285, 516, 661, 700, 703
BsmAI GTCTC 5 cut(s) 487, 740, 973, 1041, 1055
BsmBI CGTCTC 1 cut(s) 1041
BsnI GGCC 5 cut(s) 83, 107, 278, 342, 504
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
Bsp19I CCATGG 1 cut(s) 660
BspANI GGCC 5 cut(s) 83, 107, 278, 342, 504
BspDI ATCGAT 1 cut(s) 1024
BspFNI CGCG 3 cut(s) 104, 339, 424
BspLI GGNNCC 2 cut(s) 323, 746
BspT107I GGYRCC 2 cut(s) 321, 744
BsrBI CCGCTC 2 cut(s) 173, 192
BsrDI GCAATG 3 cut(s) 264, 681, 981
BsrI ACTGG 3 cut(s) 178, 730, 1060
BssECI CCNNGG 4 cut(s) 231, 411, 499, 660
BssMI GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
BssNI GRCGYC 4 cut(s) 11, 322, 378, 1031
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 3 cut(s) 130, 326, 822
Bst4CI ACNGT 4 cut(s) 68, 208, 244, 860
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 4 cut(s) 11, 322, 378, 1031
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 784
BstDSI CCRYGG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 1 cut(s) 874
BstFNI CGCG 3 cut(s) 104, 339, 424
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 3 cut(s) 324, 339, 856
BstKTI GATC 6 cut(s) 47, 117, 385, 772, 1024, 1028
BstMAI GTCTC 5 cut(s) 487, 740, 973, 1041, 1055
BstMBI GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
BstMCI CGRYCG 2 cut(s) 385, 1028
BstMWI GCNNNNNNNGC 5 cut(s) 95, 104, 198, 275, 319
BstNI CCWGG 3 cut(s) 130, 326, 822
BstNSI RCATGY 1 cut(s) 337
BstPAI GACNNNNGTC 1 cut(s) 732
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 128, 324, 820, 931
BstSFI CTRYAG 1 cut(s) 879
BstUI CGCG 3 cut(s) 104, 339, 424
BstV1I GCAGC 2 cut(s) 304, 1015
Bsu15I ATCGAT 1 cut(s) 1024
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 5 cut(s) 83, 107, 278, 342, 504
BsuTUI ATCGAT 1 cut(s) 1024
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 79
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 874
BtsIMutI CAGTG 4 cut(s) 240, 737, 839, 1053
Cac8I GCNNGC 1 cut(s) 784
CfoI GCGC 3 cut(s) 324, 339, 856
Cfr13I GGNCC 5 cut(s) 106, 277, 387, 727, 1008
ClaI ATCGAT 1 cut(s) 1024
CseI GACGC 2 cut(s) 19, 1039
Csp6I GTAC 5 cut(s) 204, 304, 433, 586, 745
CviAII CATG 4 cut(s) 334, 661, 779, 905
CviQI GTAC 5 cut(s) 204, 304, 433, 586, 745
DinI GGCGCC 1 cut(s) 323
DpnI GATC 6 cut(s) 46, 116, 384, 771, 1023, 1027
DpnII GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
EaeI YGGCCR 2 cut(s) 81, 340
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 3 cut(s) 139, 485, 719
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 3 cut(s) 387, 727, 1008
Eco53kI GAGCTC 1 cut(s) 238
Eco72I CACGTG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 128, 324, 820
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 1041
FaeI CATG 4 cut(s) 337, 664, 782, 908
FaiI YATR 8 cut(s) 335, 609, 662, 780, 881, 906, 1020, 1063
FatI CATG 4 cut(s) 333, 660, 778, 904
FauI CCCGC 2 cut(s) 178, 197
Fnu4HI GCNGC 7 cut(s) 105, 293, 340, 395, 676, 679, 1004
FokI GGATG 1 cut(s) 861
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 7 cut(s) 105, 293, 340, 395, 676, 679, 1004
FspAI RTGCGCAY 1 cut(s) 855
FspI TGCGCA 1 cut(s) 855
GlaI GCGC 3 cut(s) 323, 338, 855
GluI GCNGC 7 cut(s) 105, 293, 340, 395, 676, 679, 1004
GsaI CCCAGC 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 5 cut(s) 83, 107, 278, 342, 504
HapII CCGG 3 cut(s) 310, 517, 933
HgaI GACGC 2 cut(s) 19, 1039
HhaI GCGC 3 cut(s) 324, 339, 856
Hin1I GRCGYC 4 cut(s) 11, 322, 378, 1031
Hin1II CATG 4 cut(s) 337, 664, 782, 908
Hin6I GCGC 3 cut(s) 322, 337, 854
HinP1I GCGC 3 cut(s) 322, 337, 854
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 5 cut(s) 468, 590, 628, 802, 981
HpaII CCGG 3 cut(s) 310, 517, 933
HphI GGTGA 4 cut(s) 39, 178, 443, 893
Hpy166II GTNNAC 3 cut(s) 247, 435, 919
Hpy188I TCNGA 7 cut(s) 72, 232, 412, 487, 598, 625, 718
Hpy188III TCNNGA 5 cut(s) 112, 213, 286, 737, 739
Hpy8I GTNNAC 3 cut(s) 247, 435, 919
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 4 cut(s) 68, 208, 244, 860
HpyCH4IV ACGT 5 cut(s) 78, 306, 345, 378, 555
HpyCH4V TGCA 6 cut(s) 269, 686, 724, 786, 949, 1003
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 104, 198, 275, 319
HpySE526I ACGT 5 cut(s) 78, 306, 345, 378, 555
Hsp92I GRCGYC 4 cut(s) 11, 322, 378, 1031
Hsp92II CATG 4 cut(s) 337, 664, 782, 908
HspAI GCGC 3 cut(s) 322, 337, 854
KasI GGCGCC 1 cut(s) 321
KpnI GGTACC 1 cut(s) 748
Kzo9I GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
LmnI GCTCC 3 cut(s) 178, 197, 235
Lsp1109I GCAGC 2 cut(s) 304, 1015
LweI GCATC 1 cut(s) 883
MaeII ACGT 5 cut(s) 78, 306, 345, 378, 555
MaeIII GTNAC 3 cut(s) 62, 449, 836
MalI GATC 6 cut(s) 46, 116, 384, 771, 1023, 1027
MbiI CCGCTC 2 cut(s) 173, 192
MboI GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
MboII GAAGA 2 cut(s) 368, 861
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 687
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 3 cut(s) 584, 637, 975
MmeI TCCRAC 3 cut(s) 576, 603, 1009
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 962
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 809
MslI CAYNNNNRTG 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 3 cut(s) 222, 295, 1006
MspI CCGG 3 cut(s) 310, 517, 933
MspR9I CCNGG 4 cut(s) 130, 326, 822, 933
MvaI CCWGG 3 cut(s) 130, 326, 822
MvnI CGCG 3 cut(s) 104, 339, 424
MwoI GCNNNNNNNGC 5 cut(s) 95, 104, 198, 275, 319
NarI GGCGCC 1 cut(s) 322
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 1 cut(s) 660
NdeII GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
NlaIII CATG 4 cut(s) 337, 664, 782, 908
NlaIV GGNNCC 2 cut(s) 323, 746
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 2 cut(s) 449, 836
NsbI TGCGCA 1 cut(s) 855
NspI RCATGY 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 737
PcsI WCGNNNNNNNCGW 2 cut(s) 472, 564
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 2 cut(s) 468, 802
PflFI GACNNNGTC 1 cut(s) 1033
PflMI CCANNNNNTGG 3 cut(s) 129, 661, 700
PkrI GCNGC 7 cut(s) 106, 294, 341, 396, 677, 680, 1005
Ple19I CGATCG 2 cut(s) 385, 1028
PleI GAGTC 3 cut(s) 584, 636, 975
PluTI GGCGCC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
PpsI GAGTC 3 cut(s) 584, 636, 975
Ppu21I YACGTR 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 128, 324, 820
PspCI CACGTG 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 3 cut(s) 128, 324, 820
PspN4I GGNNCC 2 cut(s) 323, 746
PspPI GGNCC 5 cut(s) 106, 277, 387, 727, 1008
PsyI GACNNNGTC 1 cut(s) 1033
PvuI CGATCG 2 cut(s) 385, 1028
RsaI GTAC 5 cut(s) 205, 305, 434, 587, 746
RsaNI GTAC 5 cut(s) 204, 304, 433, 586, 745
RseI CAYNNNNRTG 1 cut(s) 834
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 809
SatI GCNGC 7 cut(s) 105, 293, 340, 395, 676, 679, 1004
Sau3AI GATC 6 cut(s) 44, 114, 382, 769, 1021, 1025
Sau96I GGNCC 5 cut(s) 106, 277, 387, 727, 1008
SchI GAGTC 3 cut(s) 584, 637, 975
ScrFI CCNGG 4 cut(s) 130, 326, 822, 933
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 1 cut(s) 879
SfoI GGCGCC 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 3 cut(s) 387, 727, 1008
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 1 cut(s) 687
SspDI GGCGCC 1 cut(s) 321
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 4 cut(s) 128, 324, 820, 931
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 68, 208, 244, 860
TaiI ACGT 5 cut(s) 81, 309, 348, 381, 558
TaqI TCGA 5 cut(s) 381, 558, 738, 1024, 1028
TaqII GACCGA 1 cut(s) 375
TasI AATT 1 cut(s) 687
TauI GCSGC 5 cut(s) 107, 342, 397, 678, 681
TfiI GAWTC 2 cut(s) 468, 802
Tru1I TTAA 1 cut(s) 809
Tru9I TTAA 1 cut(s) 809
TscAI CASTG 4 cut(s) 247, 737, 839, 1060
TseFI GTSAC 2 cut(s) 449, 836
TseI GCWGC 2 cut(s) 292, 1003
Tsp45I GTSAC 2 cut(s) 449, 836
TspRI CASTG 4 cut(s) 247, 737, 839, 1060
Tth111I GACNNNGTC 1 cut(s) 1033
Van91I CCANNNNNTGG 3 cut(s) 129, 661, 700
VpaK11BI GGWCC 3 cut(s) 387, 727, 1008
XceI RCATGY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 962
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.