Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Forward (+)

20631643 .. 20633843

Gene Structure 2201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCTGGTAGGTTGGTGGTGGCGCTGATGACCAAGTGGTGCACATTACCAACCCCACCAGCCGCAGCACCTATCCCCCTCCACCTCTCCGGCCCTGCCCTCCTGCGCCCACCACCTCTATACGCACCACCGCGCGCCACCCGGACAATCGCAATGAACACCACCAATCAAGACCAAGACTCCCTCGACGCTCTATTCAAGCAGAAAAGAATCCTCCGCTCAAATGTCCGCAAAGCCCTCAAATCCATGGATCCGACACTCAGATCCCATGAAGAATATGCAATTCAGAATATTGTATTGGAAGCTCCATGGTTTAAATCTTGTCAAAGACTATGTGCGTATATAAGCTGCAGTGCTTTGAGGGAAGTTGATACTTCAAGGTTACTGTCTGAAATTCTTCAGAGTCCACTTAAAGAGGGTGATGTGCAGCTGAGGAAAAAGCTCTATGTTCCGCGTGTCGAGGACAAGAACAGTCACATGAGAATGCTGAACATTTCGTGTATTGATGATCTTGTGGCGAATTCGATGAATATTTTGGAGCCTGCTCCGGTGGATTCTGGTGGAAATGAACGCGAAGATGTAATGCAGGCAAGTGACCCAGTTGATTTGCTTCTCTTACCGGGACTAGCGTTTGACAGATCTGGGAGACGCTTGGGTCGTGGTGGAGGTTATTATGATACCTTCCTGACAAGGTACCAAGAGCTTGCAAAGGTACACAATTGGAAGCAACCACTCCTTGTTGCACTGTCCTATTCTGCACAGATATTGGATGAAGGAGTTATTCCAATCACTCCACATGATGTACTGGTGGATGCGCTTGTGTCCCCAGCGGGTGTGATCGATCCCATCAGCCCAACCGCTTTAGACAGAATGAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

294

Amino Acids

32.53

Weight (kDa)

8.23

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	69 - 276	9.7e-32	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	4 cut(s)	133, 135, 454, 573
AciI	CCGC	7 cut(s)	63, 131, 217, 229, 452, 830, 858
AclWI	GGATC	4 cut(s)	245, 258, 258, 836
AcsI	RAATTY	2 cut(s)	393, 520
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	3 cut(s)	695, 714, 804
AgsI	TTSAA	2 cut(s)	199, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	305, 348, 430, 442, 703, 877
AluI	AGCT	6 cut(s)	305, 348, 430, 442, 703, 877
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	640
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	4 cut(s)	245, 258, 258, 836
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	65, 348, 427
ApoI	RAATTY	2 cut(s)	393, 520
Asp700I	GAANNNNTTC	1 cut(s)	396
Asp718I	GGTACC	1 cut(s)	693
AspLEI	GCGC	5 cut(s)	25, 108, 135, 137, 817
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	2 cut(s)	142, 621
AsuHPI	GGTGA	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	77, 335, 439
BccI	CCATC	1 cut(s)	854
BcnI	CCSGG	2 cut(s)	142, 621
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	26
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	4 cut(s)	63, 66, 349, 428
BlsI	GCNGC	4 cut(s)	64, 67, 350, 429
Bme1390I	CCNGG	2 cut(s)	142, 621
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	252, 540, 695
BmrFI	CCNGG	2 cut(s)	142, 621
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	142, 621
Bsa29I	ATCGAT	1 cut(s)	840
BsaJI	CCNNGG	2 cut(s)	246, 308
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	2 cut(s)	599, 810
Bse3DI	GCAATG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	246, 308
BseGI	GGATG	2 cut(s)	775, 817
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	274, 422
BseNI	ACTGG	2 cut(s)	599, 810
BsePI	GCGCGC	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	77, 335, 439
BseYI	CCCAGC	1 cut(s)	826
BsgI	GTGCAG	2 cut(s)	446, 741
Bsh1236I	CGCG	4 cut(s)	133, 135, 454, 573
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	693
BshVI	ATCGAT	1 cut(s)	840
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	90, 142, 548, 620
BslFI	GGGAC	2 cut(s)	636, 808
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	2 cut(s)	636, 808
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
Bsp19I	CCATGG	2 cut(s)	246, 308
BspACI	CCGC	7 cut(s)	63, 131, 217, 229, 452, 830, 858
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	273, 423
BspDI	ATCGAT	1 cut(s)	840
BspFNI	CGCG	4 cut(s)	133, 135, 454, 573
BspLI	GGNNCC	3 cut(s)	252, 540, 695
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	4 cut(s)	245, 258, 258, 836
BspT107I	GGYRCC	1 cut(s)	693
BsrBI	CCGCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	599, 810
BssECI	CCNNGG	2 cut(s)	246, 308
BssHII	GCGCGC	1 cut(s)	133
BssMI	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
BssT1I	CCWWGG	2 cut(s)	246, 308
Bst4CI	ACNGT	3 cut(s)	387, 473, 747
BstC8I	GCNNGC	4 cut(s)	135, 543, 588, 705
BstDEI	CTNAG	2 cut(s)	260, 431
BstDSI	CCRYGG	2 cut(s)	246, 308
BstF5I	GGATG	2 cut(s)	775, 817
BstFNI	CGCG	4 cut(s)	133, 135, 454, 573
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	5 cut(s)	25, 108, 135, 137, 817
BstKTI	GATC	6 cut(s)	253, 266, 511, 641, 840, 844
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
BstSCI	CCNGG	2 cut(s)	140, 619
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	4 cut(s)	133, 135, 454, 573
BstV1I	GCAGC	3 cut(s)	77, 335, 439
BstX2I	RGATCY	3 cut(s)	250, 263, 638
BstYI	RGATCY	3 cut(s)	250, 263, 638
Bsu15I	ATCGAT	1 cut(s)	840
BsuRI	GGCC	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	840
BtgI	CCRYGG	2 cut(s)	246, 308
BtsCI	GGATG	2 cut(s)	775, 817
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	358, 743
Cac8I	GCNNGC	4 cut(s)	135, 543, 588, 705
CfoI	GCGC	5 cut(s)	25, 108, 135, 137, 817
Cfr13I	GGNCC	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	840
CseI	GACGC	2 cut(s)	197, 657
Csp6I	GTAC	3 cut(s)	694, 713, 803
CviAII	CATG	5 cut(s)	247, 269, 309, 478, 797
CviQI	GTAC	3 cut(s)	694, 713, 803
DdeI	CTNAG	2 cut(s)	260, 431
DpnI	GATC	6 cut(s)	252, 265, 510, 640, 839, 843
DpnII	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	246, 308
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	246, 308
ErhI	CCWWGG	2 cut(s)	246, 308
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	5 cut(s)	250, 272, 312, 481, 800
FaqI	GGGAC	2 cut(s)	636, 808
FatI	CATG	5 cut(s)	246, 268, 308, 477, 796
FauI	CCCGC	1 cut(s)	823
Fnu4HI	GCNGC	4 cut(s)	63, 66, 349, 428
FokI	GGATG	2 cut(s)	782, 824
Fsp4HI	GCNGC	4 cut(s)	63, 66, 349, 428
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	5 cut(s)	24, 107, 134, 136, 816
GluI	GCNGC	4 cut(s)	63, 66, 349, 428
GsaI	CCCAGC	1 cut(s)	830
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	4 cut(s)	90, 142, 548, 620
HgaI	GACGC	2 cut(s)	197, 657
HhaI	GCGC	5 cut(s)	25, 108, 135, 137, 817
Hin1II	CATG	5 cut(s)	250, 272, 312, 481, 800
Hin6I	GCGC	5 cut(s)	23, 106, 133, 135, 815
HinP1I	GCGC	5 cut(s)	23, 106, 133, 135, 815
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	4 cut(s)	179, 210, 403, 554
HpaII	CCGG	4 cut(s)	90, 142, 548, 620
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	42, 407, 715
Hpy188I	TCNGA	5 cut(s)	255, 263, 288, 391, 402
Hpy188III	TCNNGA	2 cut(s)	170, 685
Hpy8I	GTNNAC	3 cut(s)	42, 407, 715
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	691, 767
HpyCH4III	ACNGT	3 cut(s)	387, 473, 747
HpyCH4V	TGCA	8 cut(s)	42, 281, 351, 427, 586, 707, 743, 758
HpyF3I	CTNAG	2 cut(s)	260, 431
Hsp92II	CATG	5 cut(s)	250, 272, 312, 481, 800
HspAI	GCGC	5 cut(s)	23, 106, 133, 135, 815
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
LmnI	GCTCC	3 cut(s)	310, 538, 550
Lsp1109I	GCAGC	3 cut(s)	77, 335, 439
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	3 cut(s)	381, 473, 593
MalI	GATC	6 cut(s)	252, 265, 510, 640, 839, 843
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
MboII	GAAGA	3 cut(s)	284, 389, 587
MfeI	CAATTG	1 cut(s)	718
MflI	RGATCY	3 cut(s)	250, 263, 638
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	4 cut(s)	282, 393, 520, 718
MlyI	GAGTC	2 cut(s)	173, 412
MmeI	TCCRAC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	315, 411
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	430, 830
MspI	CCGG	4 cut(s)	90, 142, 548, 620
MspR9I	CCNGG	2 cut(s)	142, 621
MunI	CAATTG	1 cut(s)	718
Mva1269I	GAATGC	1 cut(s)	489
MvnI	CGCG	4 cut(s)	133, 135, 454, 573
NciI	CCSGG	2 cut(s)	142, 621
NcoI	CCATGG	2 cut(s)	246, 308
NdeII	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
NlaIII	CATG	5 cut(s)	250, 272, 312, 481, 800
NlaIV	GGNNCC	3 cut(s)	252, 540, 695
NmuCI	GTSAC	2 cut(s)	473, 593
PauI	GCGCGC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	210, 554
PkrI	GCNGC	4 cut(s)	64, 67, 350, 429
PleI	GAGTC	2 cut(s)	173, 411
PpsI	GAGTC	2 cut(s)	173, 411
PspFI	CCCAGC	1 cut(s)	826
PspN4I	GGNNCC	3 cut(s)	252, 540, 695
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	353
PsuI	RGATCY	3 cut(s)	250, 263, 638
PteI	GCGCGC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	695, 714, 804
RsaNI	GTAC	3 cut(s)	694, 713, 803
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	315, 411
SatI	GCNGC	4 cut(s)	63, 66, 349, 428
Sau3AI	GATC	6 cut(s)	250, 263, 508, 638, 837, 841
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	173, 412
ScrFI	CCNGG	2 cut(s)	142, 621
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	282, 393, 520, 718
SsiI	CCGC	7 cut(s)	63, 131, 217, 229, 452, 830, 858
SspI	AATATT	2 cut(s)	292, 532
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	140, 619
StyI	CCWWGG	2 cut(s)	246, 308
TaaI	ACNGT	3 cut(s)	387, 473, 747
TaqI	TCGA	4 cut(s)	186, 459, 524, 840
TasI	AATT	4 cut(s)	282, 393, 520, 718
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	210, 554
Tru1I	TTAA	2 cut(s)	315, 411
Tru9I	TTAA	2 cut(s)	315, 411
TscAI	CASTG	2 cut(s)	358, 750
TseFI	GTSAC	2 cut(s)	473, 593
TseI	GCWGC	3 cut(s)	65, 348, 427
Tsp45I	GTSAC	2 cut(s)	473, 593
TspDTI	ATGAA	5 cut(s)	170, 285, 542, 582, 786
TspRI	CASTG	2 cut(s)	358, 750
VneI	GTGCAC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	393, 520
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.