Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Reverse (-)

22282286 .. 22283826

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCCATTGTTCGAGGCCACCCCGAGGCCCATAATTCCTTAAACCCTTACTCGGATGAGAGTGAAAAATCCCAGTCTCCAGAAATCTTAGAGAGAAAAAAGATAGGAAGAGAGAGAGAGATGGGAAGCGATAGCGAAGTAGAGAAGTCAGCGCAGAAGGAGAGGGAGAAGAAGAAGCTGCAGGCTCTCGCTCCGGTAGCCAAACCGCTCGCCGGAAAGAAGCTCTGCAAACGAACATTCAAGCTCGTCCGTAAAGCTGCTGAGCACAAATGCTTGAAGAGGGGAGTGAAGGAAGTGGTGAAAAGCATAAGGCGTGGCCAAAAGGGGTTTTGTGTTATAGCTGGGAACATTTCGCCTATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCTGAAATTCCATATGTTTACGTGCCTTCAAAAGAAGATCTTGCAAATGCCGGTGCCACCAAGAGGCCAACTTGCTGTGTCCTGGTGACAACCAAGCCTAACAAGGGGGCACTCTCCCAAGAGGATGAAGATAAAATAAAGGAAAATTACGACGAAGTTGTAGGAGAGGTCAAAGAACTTCACGCCAACCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

198

Amino Acids

21.96

Weight (kDa)

9.03

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	80 - 165	3.8e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	402
AfiI	CCNNNNNNNGG	5 cut(s)	25, 52, 212, 459, 500
AgsI	TTSAA	3 cut(s)	241, 277, 426
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	178, 223, 244, 257, 341
AluI	AGCT	5 cut(s)	178, 223, 244, 257, 341
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	4 cut(s)	16, 27, 316, 461
ApeKI	GCWGC	2 cut(s)	178, 257
ApoI	RAATTY	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	310, 493
AvaI	CYCGRG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	165, 244
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	2 cut(s)	179, 258
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	180, 259
Bme1390I	CCNGG	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	479
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 52, 212, 459, 500
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	61, 526
BseLI	CCNNNNNNNGG	5 cut(s)	25, 52, 212, 459, 500
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	165, 244
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	4 cut(s)	18, 29, 318, 463
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	194, 213, 447
BslI	CCNNNNNNNGG	5 cut(s)	25, 52, 212, 459, 500
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	4 cut(s)	18, 29, 318, 463
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	267, 508
Bsp143I	GATC	2 cut(s)	366, 433
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	4 cut(s)	18, 29, 318, 463
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	451
BspMAI	CTGCAG	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	366, 433
Bst2UI	CCWGG	1 cut(s)	479
Bst6I	CTCTTC	3 cut(s)	103, 272, 387
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	183, 210
BstDEI	CTNAG	2 cut(s)	88, 261
BstF5I	GGATG	2 cut(s)	61, 526
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	369, 436
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	366, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	165, 244
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	18, 29, 318, 463
BtsCI	GGATG	2 cut(s)	61, 526
Cac8I	GCNNGC	2 cut(s)	183, 210
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	88, 261
DpnI	GATC	2 cut(s)	368, 435
DpnII	GATC	2 cut(s)	366, 433
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	103, 272, 387
EarI	CTCTTC	3 cut(s)	103, 272, 387
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	477
FaeI	CATG	1 cut(s)	377
FaiI	YATR	7 cut(s)	33, 308, 338, 375, 388, 409, 411
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	179, 258
FokI	GGATG	2 cut(s)	68, 533
Fsp4HI	GCNGC	2 cut(s)	179, 258
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	179, 258
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	18, 29, 318, 463
HapII	CCGG	3 cut(s)	194, 213, 447
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HpaII	CCGG	3 cut(s)	194, 213, 447
HphI	GGTGA	2 cut(s)	310, 493
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	55, 593
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	151, 283, 432
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	181, 228, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	88, 261
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	366, 433
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	86, 93, 167, 207, 226, 327, 460, 464, 491
Lsp1109I	GCAGC	2 cut(s)	165, 244
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	368, 435
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	2 cut(s)	366, 433
MboII	GAAGA	7 cut(s)	120, 181, 184, 289, 404, 443, 536
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	267, 508
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	34, 402, 541
MluNI	TGGCCA	1 cut(s)	318
MnlI	CCTC	8 cut(s)	8, 19, 156, 273, 388, 453, 511, 556
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	3 cut(s)	194, 213, 447
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	2 cut(s)	366, 433
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	180, 259
Ppu21I	YACGTR	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	179, 258
Sau3AI	GATC	2 cut(s)	366, 433
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	2 cut(s)	267, 508
SetI	ASST	8 cut(s)	180, 225, 246, 259, 343, 420, 567, 588
SfcI	CTRYAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	34, 402, 541
SsiI	CCGC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	477
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	13
TasI	AATT	3 cut(s)	34, 402, 541
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	178, 257
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.