Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013291

Physical Location & Seq

Genomic Coordinates Reverse (-)

23234847 .. 23236567

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCTAGTTGGGTGTCTGTGGCAGAATGATCATATTGTTACGGTTTCTCTCGGAGGCTTCATTAGTATATTCTCAGCGAGCAACCTTGATAAAGCCCCTCTACTGATATCCGGACACATGAAGAATGTTACTTCATTAGCTGTTCTAAAGAGTGACCCAAAACTTATATTGTCTAGCAGCTATGATGGTCTCATTGTTAAATGGATTCAAGGTGCTGGATATGGTGGGAAGTTACAAAGGAAGGAGAATTCTCAGATAAAATGTTTAGCAGCTGTTGACGAAGAAATCGTTTCATGTGGATTTGACAATAAGGTTTGGAGAGTTCCTCTCCGCAGTGATCAATGTGGAGATGCAGAGGCTATTGATGTTGGAAGTCAGCCAAAGGACATAAGCCTTGCCCTTCTATCTCCTGAACTTGCTTTGGTTTCAACTGATTCTGGAGTTGTCATGCTCCATGGCACAAAAGTTCTGTCAACCATTAACCTTGGATTCACTGTGACTGCATGTACTATATCACCGGATGGAAGTGAAGCCATTGTTGGTGGGCAGGACGGTAAACTGCATATGTATTCTGTAACAGGTGATACACTTAAGGAAGAGGCTGTTTTGGAGAAGCATCGGGGGCCCATTTCTGTCATACGCTACTCTCCTGATGTTTCTATGTTTGCATCAGGAGATTTGAACCGAGAAGCTGTTGTCTGGGACCGTGCCTCTCGAGAGATCAAGCTTAAGAACATGCTGTACCATACTGCCCGAATAAACTGCCTTGCTTGGTCTCCTGATAGCACGATGGTTGCAACTGGATCTCTTGACACGTGTGTTATCATATACGAAGTCGACAAGCCTCCAGCAAGCCGTACAACCATTAAGGGTGCAAACTTGGGTGGGGTGTACGGCTTAGCTTTCATTGATGAGCACACTGTGGTCAGCTCTGGTGAGGATGCATTTATTCGTGTCTGGAGGTTGACTCCGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

326

Amino Acids

35.0

Weight (kDa)

5.67

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	40 - 235	1.1e-07	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	82 - 320	3.9e-08	WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st	PF24817	88 - 241	2.9e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	132 - 280	7.7e-08	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	139 - 322	2.1e-16	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	143 - 280	4.5e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	155 - 261	3.2e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	156 - 239	3.1e-09	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	165 - 322	3.9e-11	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	165 - 321	1.8e-19	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	166 - 319	1.9e-06	G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1	PF24105	181 - 320	1.4e-08	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	208 - 322	7.7e-11	CDC20/Fizzy WD40 domain
WDR55	PF24796	210 - 320	3.7e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	245 - 322	7.1e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	248 - 324	8.4e-10	WDR3 first beta-propeller domain
WD40	PF00400	249 - 277	6.5e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01330 AT3G18060
fragaria_vesca	FvH4_5g17110
malus_domestica	MD06G1229500.v1.1 MD14G1234400.v1.1
prunus_persica	Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1
pyrus_communis	pycom06g20050 pycom14g19520
rosa_chinensis	RchiOBHm_Chr7g0178701
rosa_laevigata	RLG00000005421
rosa_multiflora	Rmu_sc0002320.1_g000019
rosa_roxburghii	Rroxscaffold_3G00274660
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG018100 Rh7BG017600
rosa_wichuraiana	Rw7G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	837
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	2 cut(s)	331, 971
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	247
AcvI	CACGTG	1 cut(s)	816
AdeI	CACNNNGTG	1 cut(s)	922
AfaI	GTAC	4 cut(s)	508, 743, 859, 893
AflII	CTTAAG	2 cut(s)	590, 728
AflIII	ACRYGT	2 cut(s)	813, 815
AgsI	TTSAA	3 cut(s)	209, 429, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	7 cut(s)	140, 180, 272, 692, 727, 902, 930
AluI	AGCT	7 cut(s)	140, 180, 272, 692, 727, 902, 930
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	2 cut(s)	194, 780
AlwI	GGATC	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	714
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	1 cut(s)	623
ApaI	GGGCCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	177, 269
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspS9I	GGNCC	3 cut(s)	623, 624, 703
AsuHPI	GGTGA	3 cut(s)	507, 593, 947
AvaI	CYCGRG	1 cut(s)	714
AvaII	GGWCC	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	627
BbrPI	CACGTG	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	2 cut(s)	189, 281
BccI	CCATC	3 cut(s)	179, 515, 784
BceAI	ACGGC	2 cut(s)	840, 910
BcgI	CGANNNNNNTGC	2 cut(s)	744, 778
BclI	TGATCA	2 cut(s)	28, 337
BcoDI	GTCTC	2 cut(s)	194, 780
BfaI	CTAG	2 cut(s)	5, 174
BfrI	CTTAAG	2 cut(s)	590, 728
BisI	GCNGC	2 cut(s)	178, 270
BlpI	GCTNAGC	1 cut(s)	898
BlsI	GCNGC	2 cut(s)	179, 271
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	3 cut(s)	623, 624, 703
BmiI	GGNNCC	3 cut(s)	624, 625, 704
BmsI	GCATC	4 cut(s)	340, 625, 677, 931
BplI	GAGNNNNNCTC	5 cut(s)	310, 342, 312, 344, 952
BpmI	CTGGAG	2 cut(s)	459, 831
Bpu1102I	GCTNAGC	1 cut(s)	898
BsaAI	YACGTR	1 cut(s)	816
BsaI	GGTCTC	2 cut(s)	194, 780
BsaJI	CCNNGG	2 cut(s)	454, 484
BsaWI	WCCGGW	2 cut(s)	110, 517
Bse1I	ACTGG	1 cut(s)	805
BseAI	TCCGGA	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	454, 484
BseGI	GGATG	2 cut(s)	526, 946
BseMII	CTCAG	2 cut(s)	87, 266
BseNI	ACTGG	1 cut(s)	805
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	189, 281
BshFI	GGCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	918
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	111, 518
BslFI	GGGAC	1 cut(s)	716
BsmAI	GTCTC	2 cut(s)	194, 780
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	625
Bso31I	GGTCTC	2 cut(s)	194, 780
BsoBI	CYCGRG	1 cut(s)	714
Bsp120I	GGGCCC	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	627, 918
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	28, 337, 720, 803
Bsp1720I	GCTNAGC	1 cut(s)	898
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	331, 971
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	86, 265
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	624, 625, 704
BspPI	GGATC	1 cut(s)	811
BspTI	CTTAAG	2 cut(s)	590, 728
BspTNI	GGTCTC	2 cut(s)	194, 780
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	2 cut(s)	454, 484
BssMI	GATC	4 cut(s)	28, 337, 720, 803
BssT1I	CCWWGG	2 cut(s)	454, 484
Bst4CI	ACNGT	5 cut(s)	43, 496, 554, 707, 922
Bst6I	CTCTTC	1 cut(s)	591
BstAFI	CTTAAG	2 cut(s)	590, 728
BstBAI	YACGTR	1 cut(s)	816
BstC8I	GCNNGC	2 cut(s)	79, 853
BstDEI	CTNAG	3 cut(s)	73, 252, 898
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	526, 946
BstKTI	GATC	4 cut(s)	31, 340, 723, 806
BstMAI	GTCTC	2 cut(s)	194, 780
BstMBI	GATC	4 cut(s)	28, 337, 720, 803
BstMWI	GCNNNNNNNGC	1 cut(s)	622
BstNSI	RCATGY	2 cut(s)	507, 739
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	189, 281
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
BsuRI	GGCC	1 cut(s)	625
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	526, 946
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	340, 492, 918
Cac8I	GCNNGC	2 cut(s)	79, 853
Cfr13I	GGNCC	3 cut(s)	623, 624, 703
Csp6I	GTAC	4 cut(s)	507, 742, 858, 892
CviAII	CATG	6 cut(s)	118, 294, 448, 455, 504, 736
CviQI	GTAC	4 cut(s)	507, 742, 858, 892
DdeI	CTNAG	3 cut(s)	73, 252, 898
DpnI	GATC	4 cut(s)	30, 339, 722, 805
DpnII	GATC	4 cut(s)	28, 337, 720, 803
DraIII	CACNNNGTG	1 cut(s)	922
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	2 cut(s)	454, 484
Eco24I	GRGCYC	1 cut(s)	627
Eco31I	GGTCTC	2 cut(s)	194, 780
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	703
Eco72I	CACGTG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	454, 484
EcoT22I	ATGCAT	1 cut(s)	946
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	2 cut(s)	454, 484
FaeI	CATG	6 cut(s)	121, 297, 451, 458, 507, 739
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	6 cut(s)	117, 293, 447, 454, 503, 735
FauNDI	CATATG	1 cut(s)	564
FbaI	TGATCA	2 cut(s)	28, 337
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	2 cut(s)	178, 270
FokI	GGATG	2 cut(s)	533, 953
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	2 cut(s)	178, 270
FspBI	CTAG	2 cut(s)	5, 174
GluI	GCNGC	2 cut(s)	178, 270
GsuI	CTGGAG	2 cut(s)	459, 831
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	2 cut(s)	111, 518
Hin1II	CATG	6 cut(s)	121, 297, 451, 458, 507, 739
HincII	GTYRAC	4 cut(s)	277, 474, 838, 966
HindII	GTYRAC	4 cut(s)	277, 474, 838, 966
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	4 cut(s)	205, 434, 489, 967
HpaII	CCGG	2 cut(s)	111, 518
HphI	GGTGA	3 cut(s)	507, 593, 947
Hpy166II	GTNNAC	6 cut(s)	277, 474, 557, 838, 892, 966
Hpy188I	TCNGA	2 cut(s)	53, 255
Hpy8I	GTNNAC	6 cut(s)	277, 474, 557, 838, 892, 966
HpyAV	CCTTC	2 cut(s)	235, 410
HpyCH4III	ACNGT	5 cut(s)	43, 496, 554, 707, 922
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	7 cut(s)	353, 503, 562, 668, 797, 875, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	622
HpyF3I	CTNAG	3 cut(s)	73, 252, 898
HpySE526I	ACGT	1 cut(s)	815
Hsp92II	CATG	6 cut(s)	121, 297, 451, 458, 507, 739
Kpn2I	TCCGGA	1 cut(s)	110
Ksp22I	TGATCA	2 cut(s)	28, 337
Kzo9I	GATC	4 cut(s)	28, 337, 720, 803
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	2 cut(s)	189, 281
LweI	GCATC	4 cut(s)	340, 625, 677, 931
MaeI	CTAG	2 cut(s)	5, 174
MaeII	ACGT	1 cut(s)	815
MaeIII	GTNAC	6 cut(s)	37, 127, 152, 231, 496, 574
MalI	GATC	4 cut(s)	30, 339, 722, 805
MboI	GATC	4 cut(s)	28, 337, 720, 803
MboII	GAAGA	3 cut(s)	133, 293, 608
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	2 cut(s)	627, 918
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	961
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	9 cut(s)	47, 108, 336, 349, 592, 721, 855, 931, 954
Mph1103I	ATGCAT	1 cut(s)	946
MroI	TCCGGA	1 cut(s)	110
MseI	TTAA	5 cut(s)	198, 480, 591, 729, 867
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	2 cut(s)	590, 728
MspI	CCGG	2 cut(s)	111, 518
MwoI	GCNNNNNNNGC	1 cut(s)	622
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	4 cut(s)	28, 337, 720, 803
NlaIII	CATG	6 cut(s)	121, 297, 451, 458, 507, 739
NlaIV	GGNNCC	3 cut(s)	624, 625, 704
NmuCI	GTSAC	2 cut(s)	152, 496
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	507, 739
PaeR7I	CTCGAG	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	205, 434, 489
PkrI	GCNGC	2 cut(s)	179, 271
PleI	GAGTC	1 cut(s)	961
PmaCI	CACGTG	1 cut(s)	816
PmlI	CACGTG	1 cut(s)	816
PpsI	GAGTC	1 cut(s)	961
Ppu21I	YACGTR	1 cut(s)	816
PspCI	CACGTG	1 cut(s)	816
PspN4I	GGNNCC	3 cut(s)	624, 625, 704
PspOMI	GGGCCC	1 cut(s)	623
PspPI	GGNCC	3 cut(s)	623, 624, 703
PsrI	GAACNNNNNNTAC	2 cut(s)	725, 757
PsuI	RGATCY	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	4 cut(s)	508, 743, 859, 893
RsaNI	GTAC	4 cut(s)	507, 742, 858, 892
SalI	GTCGAC	1 cut(s)	836
SaqAI	TTAA	5 cut(s)	198, 480, 591, 729, 867
SatI	GCNGC	2 cut(s)	178, 270
Sau3AI	GATC	4 cut(s)	28, 337, 720, 803
Sau96I	GGNCC	3 cut(s)	623, 624, 703
SchI	GAGTC	1 cut(s)	961
SduI	GDGCHC	2 cut(s)	627, 918
SfaNI	GCATC	4 cut(s)	340, 625, 677, 931
Sfr274I	CTCGAG	1 cut(s)	714
SinI	GGWCC	1 cut(s)	703
SlaI	CTCGAG	1 cut(s)	714
SmlI	CTYRAG	3 cut(s)	590, 714, 728
SmoI	CTYRAG	3 cut(s)	590, 714, 728
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	331, 971
SspMI	CTAG	2 cut(s)	5, 174
StyI	CCWWGG	2 cut(s)	454, 484
TaaI	ACNGT	5 cut(s)	43, 496, 554, 707, 922
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	2 cut(s)	715, 837
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	205, 434, 489
Tru1I	TTAA	5 cut(s)	198, 480, 591, 729, 867
Tru9I	TTAA	5 cut(s)	198, 480, 591, 729, 867
TscAI	CASTG	3 cut(s)	340, 499, 925
TseFI	GTSAC	2 cut(s)	152, 496
TseI	GCWGC	2 cut(s)	177, 269
Tsp45I	GTSAC	2 cut(s)	152, 496
TspDTI	ATGAA	5 cut(s)	49, 123, 134, 282, 895
TspRI	CASTG	3 cut(s)	340, 499, 925
Vha464I	CTTAAG	2 cut(s)	590, 728
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	2 cut(s)	507, 739
XhoI	CTCGAG	1 cut(s)	714
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	2 cut(s)	5, 174
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.