pycom06g21680

Calcineurin-like phosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003480
Physical Location & Seq
Reverse (-)
24253020 .. 24253436
417 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGTAGTGAGCATTGCCCCTTATTGCTTGAGTTTTGCTCAACAAGCCTGTCATTCAAACAACATTTCAAAACATATAGCTTTAGGTAACTATGCAAGAGACACAAGGAGAGGTTGTATTAGAAGGCCTCAGATTTTGCCTTCTGCTCTTGGAGATGCTGTTGGGTTACGTGTGTTTGTGCTCTCTGACTTGCACACTGACTATTCTGAGAACATGGAATGGGTCAAGTGCTTACCAACTGTCAGATACAAGAATGATACTCTTATTGTTGCAGGTGACGTCGCTGAGACATACAACAACTTTATCGTGACAATGTCTGTCTTGAAGGATATATTTGAACATGTTTTGTATGTGCCTGGAAATCATGACCTTTGGTGCCGTCAGGAGGGAGAAATTCATGTGAGAAACATTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

139

Amino Acids

15.66

Weight (kDa)

6.57

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 56 - 124 2.5e-08 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 2 cut(s) 169, 340
AgsI TTSAA 4 cut(s) 57, 69, 325, 338
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 93, 281
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 93, 281
BfuAI ACCTGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpuEI CTTGAG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 143, 198, 276
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 2 cut(s) 93, 281
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 183
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 3 cut(s) 142, 199, 277
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 129, 207, 285
BstMAI GTCTC 2 cut(s) 93, 281
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 355
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 364
CviAII CATG 4 cut(s) 214, 341, 365, 398
CviJI RGCY 3 cut(s) 47, 80, 127
CviKI_1 RGCY 3 cut(s) 47, 80, 127
DdeI CTNAG 3 cut(s) 129, 207, 285
Eco147I AGGCCT 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 4 cut(s) 217, 344, 368, 401
FatI CATG 4 cut(s) 213, 340, 364, 397
HaeIII GGCC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 4 cut(s) 217, 344, 368, 401
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 132, 187, 208, 245
Hpy188III TCNNGA 4 cut(s) 307, 322, 365, 383
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 117, 150, 319
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 169, 279
HpyCH4V TGCA 3 cut(s) 95, 193, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 129, 207, 285
HpySE526I ACGT 2 cut(s) 169, 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 4 cut(s) 217, 344, 368, 401
LpnPI CCDG 5 cut(s) 61, 258, 342, 368, 369
LweI GCATC 1 cut(s) 145
MaeII ACGT 2 cut(s) 169, 279
MaeIII GTNAC 4 cut(s) 86, 165, 275, 307
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 393
MnlI CCTC 3 cut(s) 104, 138, 379
MseI TTAA 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIII CATG 4 cut(s) 217, 344, 368, 401
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 2 cut(s) 275, 307
NspI RCATGY 1 cut(s) 344
PagI TCATGA 1 cut(s) 364
PaqCI CACCTGC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 127
PciI ACATGT 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 170
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 82, 88, 115, 172, 277, 282, 372
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 1 cut(s) 393
SseBI AGGCCT 1 cut(s) 127
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 172, 282
TasI AATT 1 cut(s) 393
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 275, 307
Tsp45I GTSAC 2 cut(s) 275, 307
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 1 cut(s) 202
Tth111I GACNNNGTC 1 cut(s) 313
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 344
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.