pycom07g05110

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0019655
Physical Location & Seq
Forward (+)
4384164 .. 4387750
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05110.8

Sequence Viewer

Length: 1326 bp
ATGGGAGTTGCTATATTATATGCTTATATGTTACTGGGTCTAGGTTTTCTGAGGGCTGTTACCCCTGAATTTGGTGATTTAGTGAGTCAAGAACAACAACTTGAAGGAGCGTTCAGGTTTATGCATGAAAGATTGCGTGCTCATGCCGAGTCTGTTGCTTTCTTTGGAGGGGGTTCTAGAGAAAAAGCTATGGTTGAATCTAAGTTCAAGGAGCTTCTTGATCACTCCTCGTCTCTTTTGAAGAAGAAGTGGTTGTTCGGTATTCTGGATGATTTTACCACAAAACAACTTCCACATAATGTGACATGGGGGCTGAGCTTGTTATATGCCATGGAACACAAGGGAGACCGAGCATTGATATCCACTCAAGGTGAGCTGGCACATGCATTGCGTTTCTTAGCATCTGTTGTATCTCAAAGCTTTTTAGCTTTCGGCGACATTCTGGAATTGCATAGGAAGTTCCTTGAACTGTCTGGCGGCATCAACAGAATTTTTGAGCTTGAAGAGCTTCTAGATGTTGCACAATCTGTTGTTGGTTATTCAGGGGCTTCCGAAACTGTTACTCTGTCACCATCTAAGGGGAGAGATTTTCATTCTGAAGATGCCATTACCTTCTCTGAAGTTAATATTATCACCCCATCACAGAAAATGTTGGCCAGGAAGTTAACATGTGATATAGTACCTGGGAAAAGTTTGCTTGTTACTGGTCCAAATGGGAGTGGAAAAAGTTCTGTCTTTAGAGTTCTTAGAGGTCTTTGGCCCATCACGAGTGGAAGAATCTCTCAACCGTCACAACATGTTAAGGAAGATATTGGTTCTGGTTGTGGAGTGTTTTATGTTCCTCAGCGACCGTATACATGTTTGGGAACACTCAGGGATCAAATTATCTATCCTCTATCTTGTGAGGAGGCTGAGTTAAGGGCATTGAAGTTGTATCGAGAAGGTGAAGAAATTTCTGACAACACCAATGTTCTAGACATGCGTTTAAGAACTATTCTGGAGAATGTTCGATTGAGTTATCTTTTGGAAAGGGAGGAAGGTGGTTGGGATGCGAATCTGAATTGGGAGGACACACTCTCTCTTGGGGAACAGCAGAGATTGGGCATGGCACGCTTATTTTTCCACAAGCCTAGATTTGCAATCCTTGATGAATGCACCAATGCTACGAGCGTTGATGTTGAAGAACAACTTTATCGGCTTGCGAAAGACATGAATATCACAGTTGTTACCTCCTCACAACGTCCTGCTCTAATACCGTTCCATTCCCTGGAATTACGGTTCATTGATGGTGAGGGTAACTGGGAACTTCGTTCAATAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

442

Amino Acids

49.55

Weight (kDa)

5.75

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25840
pyrus_communis pycom02g21500 pycom07g05110
rosa_multiflora Rmu_sc0029285.1_g000001
rosa_samantha Rh3CG299000 Rh3DG294900
rosa_wichuraiana Rw0G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccI GTMKAC 1 cut(s) 854
AciI CCGC 1 cut(s) 477
AclWI GGATC 1 cut(s) 885
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 3 cut(s) 68, 489, 951
AcuI CTGAAG 2 cut(s) 618, 639
AfaI GTAC 1 cut(s) 681
AfiI CCNNNNNNNGG 3 cut(s) 71, 578, 1267
AflIII ACRYGT 3 cut(s) 668, 796, 857
AgsI TTSAA 9 cut(s) 104, 197, 208, 241, 467, 503, 928, 1181, 1314
AjnI CCWGG 3 cut(s) 656, 682, 1266
AloI GAACNNNNNNTCC 2 cut(s) 1262, 1294
AluBI AGCT 8 cut(s) 188, 214, 318, 376, 420, 428, 499, 508
AluI AGCT 8 cut(s) 188, 214, 318, 376, 420, 428, 499, 508
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 2 cut(s) 237, 339
AlwI GGATC 1 cut(s) 885
AoxI GGCC 2 cut(s) 654, 758
ApoI RAATTY 3 cut(s) 68, 489, 951
Asp700I GAANNNNTTC 2 cut(s) 507, 727
AspS9I GGNCC 2 cut(s) 707, 759
AsuHPI GGTGA 6 cut(s) 86, 383, 561, 625, 956, 1301
AvaII GGWCC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 656
BauI CACGAG 1 cut(s) 766
Bbv12I GWGCWC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 843
BccI CCATC 4 cut(s) 580, 646, 770, 1280
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 3 cut(s) 658, 684, 1268
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 237, 339
BfaI CTAG 5 cut(s) 41, 177, 512, 974, 1131
BisI GCNGC 1 cut(s) 478
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 3 cut(s) 658, 684, 1268
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 707, 759
BmrFI CCNGG 3 cut(s) 658, 684, 1268
BmrI ACTGGG 2 cut(s) 44, 1309
BmsI GCATC 4 cut(s) 410, 489, 592, 1039
BmuI ACTGGG 2 cut(s) 44, 1309
BpmI CTGGAG 1 cut(s) 1019
Bpu10I CCTNAGC 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 330, 683, 1266
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 578, 1267
Bse1I ACTGG 3 cut(s) 39, 709, 1304
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 658, 684, 1268
BseDI CCNNGG 3 cut(s) 330, 683, 1266
BseGI GGATG 2 cut(s) 274, 1054
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 3 cut(s) 71, 578, 1267
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 5 cut(s) 41, 305, 857, 886, 903
BseNI ACTGG 3 cut(s) 39, 709, 1304
BseRI GAGGAG 3 cut(s) 217, 920, 1222
Bsh1285I CGRYCG 1 cut(s) 851
BshFI GGCC 2 cut(s) 656, 760
BsiEI CGRYCG 1 cut(s) 851
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 3 cut(s) 71, 578, 1267
BsmAI GTCTC 2 cut(s) 237, 339
BsmBI CGTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 1157
BsnI GGCC 2 cut(s) 656, 760
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 220, 877
Bsp1720I GCTNAGC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 1 cut(s) 477
BspANI GGCC 2 cut(s) 656, 760
BspCNI CTCAG 5 cut(s) 42, 306, 856, 885, 904
BspPI GGATC 1 cut(s) 885
BspQI GCTCTTC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 3 cut(s) 39, 709, 1304
BssECI CCNNGG 3 cut(s) 330, 683, 1266
BssMI GATC 2 cut(s) 220, 877
BssNAI GTATAC 1 cut(s) 855
BssSI CACGAG 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 330
Bst1107I GTATAC 1 cut(s) 855
Bst2BI CACGAG 1 cut(s) 766
Bst2UI CCWGG 3 cut(s) 658, 684, 1268
Bst4CI ACNGT 7 cut(s) 471, 559, 789, 852, 1222, 1257, 1278
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 4 cut(s) 138, 378, 1111, 1200
BstDEI CTNAG 9 cut(s) 50, 201, 314, 397, 576, 746, 843, 872, 912
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 274, 1054
BstKTI GATC 2 cut(s) 223, 880
BstMAI GTCTC 2 cut(s) 237, 339
BstMBI GATC 2 cut(s) 220, 877
BstMCI CGRYCG 1 cut(s) 851
BstMWI GCNNNNNNNGC 2 cut(s) 505, 1110
BstNI CCWGG 3 cut(s) 658, 684, 1268
BstNSI RCATGY 5 cut(s) 386, 672, 800, 861, 982
BstSCI CCNGG 3 cut(s) 656, 682, 1266
BstZ17I GTATAC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 656, 760
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 274, 1054
Cac8I GCNNGC 4 cut(s) 138, 378, 1111, 1200
Cfr13I GGNCC 2 cut(s) 707, 759
Csp6I GTAC 1 cut(s) 680
CviQI GTAC 1 cut(s) 680
DdeI CTNAG 9 cut(s) 50, 201, 314, 397, 576, 746, 843, 872, 912
DpnI GATC 2 cut(s) 222, 879
DpnII GATC 2 cut(s) 220, 877
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 618, 639
EcoRII CCWGG 3 cut(s) 656, 682, 1266
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 2 cut(s) 126, 388
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 237
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 281, 1061
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 5 cut(s) 41, 177, 512, 974, 1131
GluI GCNGC 1 cut(s) 478
GsuI CTGGAG 1 cut(s) 1019
HaeIII GGCC 2 cut(s) 656, 760
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 5 cut(s) 85, 149, 197, 777, 1054
HpaI GTTAAC 1 cut(s) 666
HphI GGTGA 6 cut(s) 86, 383, 561, 625, 956, 1301
Hpy166II GTNNAC 2 cut(s) 666, 855
Hpy188I TCNGA 6 cut(s) 51, 553, 598, 619, 958, 1059
Hpy8I GTNNAC 2 cut(s) 666, 855
HpyAV CCTTC 4 cut(s) 98, 622, 935, 1031
HpyCH4III ACNGT 7 cut(s) 471, 559, 789, 852, 1222, 1257, 1278
HpyCH4IV ACGT 1 cut(s) 1240
HpyCH4V TGCA 6 cut(s) 124, 386, 451, 521, 1139, 1155
HpyF10VI GCNNNNNNNGC 2 cut(s) 505, 1110
HpyF3I CTNAG 9 cut(s) 50, 201, 314, 397, 576, 746, 843, 872, 912
HpySE526I ACGT 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 666
Kzo9I GATC 2 cut(s) 220, 877
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 107, 211
LweI GCATC 4 cut(s) 410, 489, 592, 1039
MaeI CTAG 5 cut(s) 41, 177, 512, 974, 1131
MaeII ACGT 1 cut(s) 1240
MaeIII GTNAC 9 cut(s) 30, 58, 301, 559, 567, 700, 789, 1225, 1295
MalI GATC 2 cut(s) 222, 879
MboI GATC 2 cut(s) 220, 877
MboII GAAGA 8 cut(s) 253, 256, 515, 611, 786, 818, 959, 1193
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 7 cut(s) 68, 446, 489, 882, 951, 1060, 1271
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 2 cut(s) 94, 158
Mox20I TGGCCA 1 cut(s) 656
Mph1103I ATGCAT 2 cut(s) 126, 388
MroXI GAANNNNTTC 2 cut(s) 507, 727
MscI TGGCCA 1 cut(s) 656
MseI TTAA 5 cut(s) 624, 665, 801, 917, 986
Msp20I TGGCCA 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 658, 684, 1268
Mva1269I GAATGC 1 cut(s) 1157
MvaI CCWGG 3 cut(s) 658, 684, 1268
MwoI GCNNNNNNNGC 2 cut(s) 505, 1110
NcoI CCATGG 1 cut(s) 330
NdeII GATC 2 cut(s) 220, 877
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 3 cut(s) 301, 567, 789
NsiI ATGCAT 2 cut(s) 126, 388
NspI RCATGY 5 cut(s) 386, 672, 800, 861, 982
PciI ACATGT 3 cut(s) 668, 796, 857
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 1157
PdmI GAANNNNTTC 2 cut(s) 507, 727
PfeI GAWTC 3 cut(s) 197, 777, 1054
PflMI CCANNNNNTGG 1 cut(s) 1267
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 2 cut(s) 93, 157
PpsI GAGTC 2 cut(s) 93, 157
PscI ACATGT 3 cut(s) 668, 796, 857
Psp6I CCWGG 3 cut(s) 656, 682, 1266
PspGI CCWGG 3 cut(s) 656, 682, 1266
PspPI GGNCC 2 cut(s) 707, 759
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 5 cut(s) 624, 665, 801, 917, 986
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 2 cut(s) 220, 877
Sau96I GGNCC 2 cut(s) 707, 759
SchI GAGTC 2 cut(s) 94, 158
ScrFI CCNGG 3 cut(s) 658, 684, 1268
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 4 cut(s) 410, 489, 592, 1039
SinI GGWCC 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 7 cut(s) 68, 446, 489, 882, 951, 1060, 1271
SsiI CCGC 1 cut(s) 477
SspI AATATT 1 cut(s) 628
SspMI CTAG 5 cut(s) 41, 177, 512, 974, 1131
StyD4I CCNGG 3 cut(s) 656, 682, 1266
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 7 cut(s) 471, 559, 789, 852, 1222, 1257, 1278
TaiI ACGT 1 cut(s) 1243
TaqI TCGA 2 cut(s) 937, 1009
TaqII GACCGA 1 cut(s) 363
TasI AATT 7 cut(s) 68, 446, 489, 882, 951, 1060, 1271
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 3 cut(s) 197, 777, 1054
Tru1I TTAA 5 cut(s) 624, 665, 801, 917, 986
Tru9I TTAA 5 cut(s) 624, 665, 801, 917, 986
TseFI GTSAC 3 cut(s) 301, 567, 789
Tsp45I GTSAC 3 cut(s) 301, 567, 789
TspDTI ATGAA 5 cut(s) 141, 581, 1164, 1226, 1270
Van91I CCANNNNNTGG 1 cut(s) 1267
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 68, 489, 951
XbaI TCTAGA 3 cut(s) 176, 511, 973
XceI RCATGY 5 cut(s) 386, 672, 800, 861, 982
XmiI GTMKAC 1 cut(s) 854
XmnI GAANNNNTTC 2 cut(s) 507, 727
XspI CTAG 5 cut(s) 41, 177, 512, 974, 1131
Zsp2I ATGCAT 2 cut(s) 126, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.