Rw0G006740

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00247
OG0019655
Physical Location & Seq
Reverse (-)
104 .. 10831
10728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006740.1

Sequence Viewer

Length: 840 bp
ATGGTTGAATCAAAGTTCAAGGAGCTACTCCATCACTCCTCGTCTCTTTTGAAGAAGCAATGGTTATTCGGTATTCTAGATGATTTTATCACGAAACAACTCCCACATAATGTGACTTGGGGATTGAGCTTGCTATATGCCATTGAACACAAGGGAGACCGAGCATTAATTATCTCAAGAAAATTCCTGGAACTCTCTGGCAGCATCAACAGGGTTTTTGAACTTGAAGAGCTTTTAGACGCTGCACAATCTGTGGTTGGCTATTCTGGGGATTCTGAAGCTGGTAACTCATCATCATCTGACAGGGAAGGTTTTCAATTTGAAGATGCCATTAACTTCTCTGAAGTTGATATCATAACCCCGTCACAGAAATTGTTGGCTAGGAAATTAACATGTGATATAGTACCTGGGAAAAGCTTGCTTGTTACTGGTCCAAACGGGAGTGGAAAAAGTTATGTGTTTAGAGTTCTTAGAGGTCTTTGGCCCATCATGAGTGGAAGAATCACTAGACCATCTCAAGATATTAACGGAGTTAGTAGAGATGTTGGATCTCGTTGCGGAGTTTTTTATGTTCCTCAGCGACCTTACACATGCTTGGGAACACTCAGGGATCAAATTATATATCCTCTCTCTTTTGATGAAGAGGAGAAAAGGGCATTGAAGTTGTATCAAGAAGGTGGAAAATTTGCTGACAGCACCAACATTCTGGACATGCGTTTGGGAACTATTCTGGAGAATGTCCGATTAAGTTATCTTTTGGAAAGGGAGGAAGGTGGTTGGGATGCTAATCTCAATTGGGAGGACACTCTCTCTCTCGGAGAACAGCAGAGATTAGGCATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

280

Amino Acids

31.5

Weight (kDa)

5.4

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 129 - 278 1.1e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25840
pyrus_communis pycom02g21500 pycom07g05110
rosa_multiflora Rmu_sc0029285.1_g000001
rosa_samantha Rh3CG299000 Rh3DG294900
rosa_wichuraiana Rw0G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 558
AclWI GGATC 2 cut(s) 556, 618
AcsI RAATTY 2 cut(s) 182, 683
AcuI CTGAAG 2 cut(s) 297, 363
AfaI GTAC 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 9 cut(s) 8, 19, 52, 146, 221, 227, 317, 323, 661
AjnI CCWGG 2 cut(s) 186, 406
AluBI AGCT 5 cut(s) 25, 129, 232, 281, 417
AluI AGCT 5 cut(s) 25, 129, 232, 281, 417
Alw26I GTCTC 2 cut(s) 48, 150
AlwI GGATC 2 cut(s) 556, 618
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 201, 242
ApoI RAATTY 2 cut(s) 182, 683
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 431, 483
AvaII GGWCC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 213, 229
BccI CCATC 3 cut(s) 39, 494, 520
BciT130I CCWGG 2 cut(s) 188, 408
BcoDI GTCTC 2 cut(s) 48, 150
BfaI CTAG 3 cut(s) 77, 381, 507
BisI GCNGC 2 cut(s) 202, 243
BlsI GCNGC 2 cut(s) 203, 244
Bme1390I CCNGG 2 cut(s) 188, 408
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 431, 483
BmrFI CCNGG 2 cut(s) 188, 408
BmsI GCATC 3 cut(s) 213, 316, 772
BpmI CTGGAG 1 cut(s) 752
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 160, 501
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 2 cut(s) 188, 408
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 787
BseJI GATNNNNATC 1 cut(s) 786
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 590, 619
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 28, 659
BseXI GCAGC 2 cut(s) 213, 229
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 48, 150
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 548, 610
BspACI CCGC 1 cut(s) 558
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 589, 618
BspHI TCATGA 1 cut(s) 489
BspPI GGATC 2 cut(s) 556, 618
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 2 cut(s) 548, 610
Bst2UI CCWGG 2 cut(s) 188, 408
Bst6I CTCTTC 2 cut(s) 222, 636
BstC8I GCNNGC 2 cut(s) 131, 419
BstDEI CTNAG 3 cut(s) 470, 576, 605
BstF5I GGATG 1 cut(s) 787
BstKTI GATC 2 cut(s) 551, 613
BstMAI GTCTC 2 cut(s) 48, 150
BstMBI GATC 2 cut(s) 548, 610
BstNI CCWGG 2 cut(s) 188, 408
BstNSI RCATGY 3 cut(s) 396, 594, 715
BstSCI CCNGG 2 cut(s) 186, 406
BstV1I GCAGC 2 cut(s) 213, 229
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 787
Cac8I GCNNGC 2 cut(s) 131, 419
CciI TCATGA 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 431, 483
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 404
CviAII CATG 5 cut(s) 393, 490, 591, 712, 838
CviJI RGCY 8 cut(s) 25, 129, 232, 261, 281, 380, 417, 484
CviKI_1 RGCY 8 cut(s) 25, 129, 232, 261, 281, 380, 417, 484
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 470, 576, 605
DpnI GATC 2 cut(s) 550, 612
DpnII GATC 2 cut(s) 548, 610
Eam1104I CTCTTC 2 cut(s) 222, 636
EarI CTCTTC 2 cut(s) 222, 636
Eco31I GGTCTC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 297, 363
EcoRII CCWGG 2 cut(s) 186, 406
EcoRV GATATC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 396, 493, 594, 715
FatI CATG 4 cut(s) 392, 489, 590, 711
Fnu4HI GCNGC 2 cut(s) 202, 243
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 2 cut(s) 202, 243
FspBI CTAG 3 cut(s) 77, 381, 507
GluI GCNGC 2 cut(s) 202, 243
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 1 cut(s) 484
HgaI GACGC 1 cut(s) 248
Hin1II CATG 4 cut(s) 396, 493, 594, 715
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 3 cut(s) 8, 272, 501
Hpy188I TCNGA 5 cut(s) 277, 301, 343, 743, 818
Hpy188III TCNNGA 8 cut(s) 77, 91, 177, 490, 518, 671, 707, 731
HpyAV CCTTC 3 cut(s) 302, 668, 764
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 470, 576, 605
Hsp92II CATG 4 cut(s) 396, 493, 594, 715
Kzo9I GATC 2 cut(s) 548, 610
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 213, 229
LweI GCATC 3 cut(s) 213, 316, 772
MaeI CTAG 3 cut(s) 77, 381, 507
MaeIII GTNAC 4 cut(s) 112, 284, 363, 424
MalI GATC 2 cut(s) 550, 612
MboI GATC 2 cut(s) 548, 610
MboII GAAGA 5 cut(s) 64, 239, 335, 510, 653
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 1 cut(s) 548
MluCI AATT 8 cut(s) 168, 182, 317, 371, 386, 615, 683, 793
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 7 cut(s) 49, 467, 585, 636, 637, 760, 793
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 5 cut(s) 167, 333, 389, 525, 746
MspR9I CCNGG 2 cut(s) 188, 408
MunI CAATTG 1 cut(s) 793
MvaI CCWGG 2 cut(s) 188, 408
NdeII GATC 2 cut(s) 548, 610
NlaIII CATG 4 cut(s) 396, 493, 594, 715
NmuCI GTSAC 2 cut(s) 112, 363
NspI RCATGY 3 cut(s) 396, 594, 715
PagI TCATGA 1 cut(s) 489
PciI ACATGT 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 8, 272, 501
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 2 cut(s) 203, 244
PscI ACATGT 1 cut(s) 392
PshBI ATTAAT 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 186, 406
PspGI CCWGG 2 cut(s) 186, 406
PspPI GGNCC 2 cut(s) 431, 483
PsuI RGATCY 1 cut(s) 548
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 5 cut(s) 167, 333, 389, 525, 746
SatI GCNGC 2 cut(s) 202, 243
Sau3AI GATC 2 cut(s) 548, 610
Sau96I GGNCC 2 cut(s) 431, 483
ScrFI CCNGG 2 cut(s) 188, 408
SfaNI GCATC 3 cut(s) 213, 316, 772
SinI GGWCC 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 175, 516
SmoI CTYRAG 2 cut(s) 175, 516
Sse9I AATT 8 cut(s) 168, 182, 317, 371, 386, 615, 683, 793
SsiI CCGC 1 cut(s) 558
SspMI CTAG 3 cut(s) 77, 381, 507
StyD4I CCNGG 2 cut(s) 186, 406
TaqII GACCGA 1 cut(s) 174
TasI AATT 8 cut(s) 168, 182, 317, 371, 386, 615, 683, 793
TfiI GAWTC 3 cut(s) 8, 272, 501
Tru1I TTAA 5 cut(s) 167, 333, 389, 525, 746
Tru9I TTAA 5 cut(s) 167, 333, 389, 525, 746
TseFI GTSAC 2 cut(s) 112, 363
TseI GCWGC 2 cut(s) 201, 242
Tsp45I GTSAC 2 cut(s) 112, 363
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 431
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 2 cut(s) 182, 683
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 3 cut(s) 396, 594, 715
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 3 cut(s) 77, 381, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.