Rh3DG294900

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019655
Physical Location & Seq
Forward (+)
30658055 .. 30662176
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG294900.1

Sequence Viewer

Length: 744 bp
ATGGCCGATGCCATTAACTTCTCTGAAGTTGATATCATAACCCCGTCACGGAAATTGTTGGCTAGGAAATTAACATGTGATATAGTACCTGGGAAAAGCTTGCTTGTTACTGGTCCAAACGGGAGTGGAAAAAGTTCTGTGTTTAGAGTTCTTAGAGGTCTTTGGCCCATCATGAGTGGAAGAATCACTAGACCATCTCAAGATATTAACGGAGTTAGTAGAGATATTGGATCTGGTTGCGGAGTTTTTTATGTTCCTCAGCGACCTTACACATGCTTGGGAACACTCCGGGATCAAATTATATATCCTCTCTCTTTTGATGAGGCGGAGAAAAGGGCATTGAAGTTGTATCAAGAAGGTGGAAAATTTGCTGACAGCACCAACATTCTGGACATGCGTTTGGGAACTATTCTGGAGAATGTCCGATTAAGTTATCTTCTGGAAAGGGAGGAAGGTGGTTGGGATGCTAATCTCAATTGGGAGGACACTCTCTCTCTCGGAGAACAGCAGAGATTAGGCATGGCACGCTTATTTTTTCACAAACCAAAATTCGCCATCCTTGATGAATGCACTAATGCTACAAGTGTTGATGTTGAAGAACAACTCTATCGGCTTGCAAAAGACATGGGTATCACAGTTGTTACCTCCTCACAAACACCTCCAATTGTTGGAATCCTCACACGGCATGACTTTATCCTCAAGCACGTTTTGGGACTTTACCCTCATATCAAAGGGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

247

Amino Acids

27.53

Weight (kDa)

6.91

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 23 - 192 4.8e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25840
pyrus_communis pycom02g21500 pycom07g05110
rosa_multiflora Rmu_sc0029285.1_g000001
rosa_samantha Rh3CG299000 Rh3DG294900
rosa_wichuraiana Rw0G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 668
AciI CCGC 2 cut(s) 240, 326
AclWI GGATC 2 cut(s) 238, 300
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 365, 548
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 48, 668
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 2 cut(s) 343, 596
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AlwI GGATC 2 cut(s) 238, 300
AoxI GGCC 2 cut(s) 3, 164
ApoI RAATTY 2 cut(s) 365, 548
Asp700I GAANNNNTTC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 113, 165
AsuC2I CCSGG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BbvCI CCTCAGC 1 cut(s) 258
BccI CCATC 3 cut(s) 176, 202, 563
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 2 cut(s) 63, 189
Bme1390I CCNGG 2 cut(s) 90, 290
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 113, 165
BmrFI CCNGG 2 cut(s) 90, 290
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 183, 683
BpuMI CCSGG 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 668
Bse1I ACTGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 469, 555
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 48, 668
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 637
BshFI GGCC 2 cut(s) 5, 166
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 2 cut(s) 48, 668
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 2 cut(s) 5, 166
Bsp143I GATC 2 cut(s) 230, 292
BspACI CCGC 2 cut(s) 240, 326
BspANI GGCC 2 cut(s) 5, 166
BspCNI CTCAG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 171
BspPI GGATC 2 cut(s) 238, 300
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 230, 292
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 101, 526, 615
BstDEI CTNAG 2 cut(s) 152, 258
BstF5I GGATG 2 cut(s) 469, 555
BstKTI GATC 2 cut(s) 233, 295
BstMBI GATC 2 cut(s) 230, 292
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 3 cut(s) 78, 276, 397
BstSCI CCNGG 2 cut(s) 88, 288
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 2 cut(s) 5, 166
BtsCI GGATG 2 cut(s) 469, 555
Cac8I GCNNGC 3 cut(s) 101, 526, 615
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 113, 165
Csp6I GTAC 1 cut(s) 86
CviAII CATG 7 cut(s) 75, 172, 273, 394, 520, 625, 686
CviJI RGCY 5 cut(s) 5, 62, 99, 166, 613
CviKI_1 RGCY 5 cut(s) 5, 62, 99, 166, 613
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 152, 258
DpnI GATC 2 cut(s) 232, 294
DpnII GATC 2 cut(s) 230, 292
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 341
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 34
FaeI CATG 7 cut(s) 78, 175, 276, 397, 523, 628, 689
FaqI GGGAC 1 cut(s) 726
FatI CATG 7 cut(s) 74, 171, 272, 393, 519, 624, 685
FokI GGATG 2 cut(s) 476, 542
FspBI CTAG 2 cut(s) 63, 189
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 5, 166
HapII CCGG 1 cut(s) 289
Hin1II CATG 7 cut(s) 78, 175, 276, 397, 523, 628, 689
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 2 cut(s) 183, 672
HpaII CCGG 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 25, 425, 500
Hpy188III TCNNGA 6 cut(s) 172, 200, 353, 389, 413, 440
HpyAV CCTTC 2 cut(s) 350, 446
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 2 cut(s) 570, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 152, 258
HpySE526I ACGT 1 cut(s) 705
Hsp92II CATG 7 cut(s) 78, 175, 276, 397, 523, 628, 689
Kzo9I GATC 2 cut(s) 230, 292
LpnPI CCDG 8 cut(s) 75, 96, 102, 219, 302, 374, 398, 425
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 63, 189
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 3 cut(s) 45, 106, 640
MalI GATC 2 cut(s) 232, 294
MboI GATC 2 cut(s) 230, 292
MboII GAAGA 3 cut(s) 192, 428, 608
MfeI CAATTG 2 cut(s) 475, 663
MflI RGATCY 1 cut(s) 230
MluCI AATT 7 cut(s) 53, 68, 297, 365, 475, 548, 663
MmeI TCCRAC 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 5 cut(s) 15, 71, 207, 428, 742
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 90, 290
MunI CAATTG 2 cut(s) 475, 663
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 290
NdeII GATC 2 cut(s) 230, 292
NlaIII CATG 7 cut(s) 78, 175, 276, 397, 523, 628, 689
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 3 cut(s) 78, 276, 397
PagI TCATGA 1 cut(s) 171
PciI ACATGT 1 cut(s) 74
PctI GAATGC 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 183, 672
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 288
PscI ACATGT 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspPI GGNCC 2 cut(s) 113, 165
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 5 cut(s) 15, 71, 207, 428, 742
Sau3AI GATC 2 cut(s) 230, 292
Sau96I GGNCC 2 cut(s) 113, 165
ScrFI CCNGG 2 cut(s) 90, 290
SetI ASST 9 cut(s) 91, 101, 160, 268, 361, 457, 647, 661, 708
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 198, 698
SmoI CTYRAG 2 cut(s) 198, 698
Sse9I AATT 7 cut(s) 53, 68, 297, 365, 475, 548, 663
SsiI CCGC 2 cut(s) 240, 326
SspMI CTAG 2 cut(s) 63, 189
StyD4I CCNGG 2 cut(s) 88, 288
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 1 cut(s) 708
TasI AATT 7 cut(s) 53, 68, 297, 365, 475, 548, 663
TfiI GAWTC 2 cut(s) 183, 672
Tru1I TTAA 5 cut(s) 15, 71, 207, 428, 742
Tru9I TTAA 5 cut(s) 15, 71, 207, 428, 742
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 579
TspGWI ACGGA 2 cut(s) 64, 225
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 365, 548
XceI RCATGY 3 cut(s) 78, 276, 397
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 63, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.