Rh3CG299000

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019655
Physical Location & Seq
Forward (+)
30766438 .. 30783166
16729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG299000.1

Sequence Viewer

Length: 1023 bp
ATGGAACAGATGGTTGAATCAAAGTTCAAGGAGCTACTCCATCACTCCTCGTCTCTTTTGAAGAAGCAATGGTTATTCGGTATTCTAGATGATTTTATCACGAAACAACTCCCACATAATGTGACTTGGGGATTGAGCTTGCTATATGCCATTGAACACAAGGGAGACCGAGCATTAATATCTACTCAAGGTGAGCTGGCACATGCATTGCGTTTCTTGGCATCTGTGGTATCTCAAAGCTTTTTAGCTTTCGGTGACATTCTTGAATTGCATAGAAAATTCCTGGAACTCTCTGGCAGCATCAACAGGGTTTTTGAACTTGAAGAGCTTTTAGACGCTGCACAATCTGTGGTTGGCTATTCTGGGGATTCTGAAGCTGGTAACTCATCATCATCTGACAGGGAAGGTTTTCAATTTGAAGATGCCATTAACTTCTCTGAAGTTGATATCATAACCCCGTCACAGAAATTGTTGGCTAGGAAATTAACATGTGATATAGTACCTGGGAAAAGCTTGCTTGTTACTGGTCCAAACGGGAGTGGAAAAAGTTATGTGTTTAGAGTTCTTAGAGGTCTTTGGCCCATCATGAGTGGAAGAATCACTAGACCATCTCAAGATATTAACGGAGTTAGTAGAGATGTTGGATCTCGTTGCGGAGTTTTTTATGTTCCTCAGCGACCTTACACATGCTTGGGAACACTCAGGGATCAAATTATATATCCTCTCTCTTTTGATGAAGAGGAGAAAAGGGCATTGAAGTTGTATCAAGAAGGTGGAAAATTTGCTGACAGCACCAACATTCTGGACATGCGTTTGGGAACTATTCTGGAGAATGTCCGATTAAGTTATCTTTTGGAAAGGGAGGAAGGTGGTTGGGATGCTAATCTCAATTGGGAGGACACTCTCTCTCTCGGAGAACAGCAGAGATTAGGCATGCGTCCTGCTCTAATACCATTCCATTCCCTGGAATTACGGCTTATTGATGGTGAGGGTAACTGGGAGCTTCGATCAATAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

340

Amino Acids

38.3

Weight (kDa)

5.41

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 161 - 315 6.8e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25840
pyrus_communis pycom02g21500 pycom07g05110
rosa_multiflora Rmu_sc0029285.1_g000001
rosa_samantha Rh3CG299000 Rh3DG294900
rosa_wichuraiana Rw0G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 964
AciI CCGC 1 cut(s) 654
AclWI GGATC 2 cut(s) 652, 714
AcsI RAATTY 2 cut(s) 278, 779
AcuI CTGAAG 2 cut(s) 393, 459
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 1 cut(s) 964
AflIII ACRYGT 1 cut(s) 488
AjnI CCWGG 3 cut(s) 282, 502, 963
AluBI AGCT 9 cut(s) 34, 138, 196, 240, 248, 328, 377, 513, 1003
AluI AGCT 9 cut(s) 34, 138, 196, 240, 248, 328, 377, 513, 1003
Alw26I GTCTC 2 cut(s) 57, 159
AlwI GGATC 2 cut(s) 652, 714
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 297, 338
ApoI RAATTY 2 cut(s) 278, 779
AseI ATTAAT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 527, 579
AsuHPI GGTGA 3 cut(s) 203, 266, 998
AvaII GGWCC 1 cut(s) 527
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 309, 325
BccI CCATC 5 cut(s) 4, 48, 590, 616, 977
BceAI ACGGC 1 cut(s) 989
BciT130I CCWGG 3 cut(s) 284, 504, 965
BcoDI GTCTC 2 cut(s) 57, 159
BfaI CTAG 3 cut(s) 86, 477, 603
BisI GCNGC 2 cut(s) 298, 339
BlsI GCNGC 2 cut(s) 299, 340
Bme1390I CCNGG 3 cut(s) 284, 504, 965
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 527, 579
BmrFI CCNGG 3 cut(s) 284, 504, 965
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 4 cut(s) 230, 309, 412, 868
BmuI ACTGGG 1 cut(s) 1006
BpmI CTGGAG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 2 cut(s) 171, 597
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 503, 963
Bsc4I CCNNNNNNNGG 1 cut(s) 964
Bse1I ACTGG 2 cut(s) 529, 1001
Bse3DI GCAATG 2 cut(s) 74, 206
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 3 cut(s) 284, 504, 965
BseDI CCNNGG 2 cut(s) 503, 963
BseGI GGATG 1 cut(s) 883
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 964
BseMI GCAATG 2 cut(s) 74, 206
BseMII CTCAG 2 cut(s) 686, 715
BseNI ACTGG 2 cut(s) 529, 1001
BseRI GAGGAG 2 cut(s) 37, 755
BseXI GCAGC 2 cut(s) 309, 325
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 964
BsmAI GTCTC 2 cut(s) 57, 159
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 644, 706, 1007
BspACI CCGC 1 cut(s) 654
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 685, 714
BspHI TCATGA 1 cut(s) 585
BspPI GGATC 2 cut(s) 652, 714
BspQI GCTCTTC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 74, 206
BsrI ACTGG 2 cut(s) 529, 1001
BssECI CCNNGG 2 cut(s) 503, 963
BssMI GATC 3 cut(s) 644, 706, 1007
Bst2UI CCWGG 3 cut(s) 284, 504, 965
Bst6I CTCTTC 2 cut(s) 318, 732
BstC8I GCNNGC 4 cut(s) 140, 198, 515, 935
BstDEI CTNAG 3 cut(s) 566, 672, 701
BstF5I GGATG 1 cut(s) 883
BstKTI GATC 3 cut(s) 647, 709, 1010
BstMAI GTCTC 2 cut(s) 57, 159
BstMBI GATC 3 cut(s) 644, 706, 1007
BstNI CCWGG 3 cut(s) 284, 504, 965
BstNSI RCATGY 5 cut(s) 206, 492, 690, 811, 937
BstSCI CCNGG 3 cut(s) 282, 502, 963
BstV1I GCAGC 2 cut(s) 309, 325
BstX2I RGATCY 1 cut(s) 644
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 644
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 1 cut(s) 883
Cac8I GCNNGC 4 cut(s) 140, 198, 515, 935
CciI TCATGA 1 cut(s) 585
Cfr13I GGNCC 2 cut(s) 527, 579
CseI GACGC 2 cut(s) 344, 926
Csp6I GTAC 1 cut(s) 500
CviAII CATG 6 cut(s) 203, 489, 586, 687, 808, 934
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 566, 672, 701
DpnI GATC 3 cut(s) 646, 708, 1009
DpnII GATC 3 cut(s) 644, 706, 1007
Eam1104I CTCTTC 2 cut(s) 318, 732
EarI CTCTTC 2 cut(s) 318, 732
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 393, 459
EcoRII CCWGG 3 cut(s) 282, 502, 963
EcoRV GATATC 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 6 cut(s) 206, 492, 589, 690, 811, 937
FatI CATG 6 cut(s) 202, 488, 585, 686, 807, 933
Fnu4HI GCNGC 2 cut(s) 298, 339
FokI GGATG 1 cut(s) 890
Fsp4HI GCNGC 2 cut(s) 298, 339
FspBI CTAG 3 cut(s) 86, 477, 603
GluI GCNGC 2 cut(s) 298, 339
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 1 cut(s) 580
HgaI GACGC 2 cut(s) 344, 926
Hin1II CATG 6 cut(s) 206, 492, 589, 690, 811, 937
HindIII AAGCTT 2 cut(s) 238, 511
HinfI GANTC 3 cut(s) 17, 368, 597
HphI GGTGA 3 cut(s) 203, 266, 998
Hpy188I TCNGA 5 cut(s) 373, 397, 439, 839, 914
Hpy188III TCNNGA 8 cut(s) 86, 100, 263, 586, 614, 767, 803, 827
HpyAV CCTTC 3 cut(s) 398, 764, 860
HpyCH4V TGCA 3 cut(s) 206, 271, 341
HpyF3I CTNAG 3 cut(s) 566, 672, 701
Hsp92II CATG 6 cut(s) 206, 492, 589, 690, 811, 937
Kzo9I GATC 3 cut(s) 644, 706, 1007
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 31, 1000
Lsp1109I GCAGC 2 cut(s) 309, 325
LweI GCATC 4 cut(s) 230, 309, 412, 868
MaeI CTAG 3 cut(s) 86, 477, 603
MaeIII GTNAC 6 cut(s) 121, 254, 380, 459, 520, 992
MalI GATC 3 cut(s) 646, 708, 1009
MboI GATC 3 cut(s) 644, 706, 1007
MboII GAAGA 5 cut(s) 73, 335, 431, 606, 749
MfeI CAATTG 1 cut(s) 889
MflI RGATCY 1 cut(s) 644
MluCI AATT 9 cut(s) 266, 278, 413, 467, 482, 711, 779, 889, 968
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 8 cut(s) 58, 563, 681, 732, 733, 856, 889, 982
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 5 cut(s) 176, 429, 485, 621, 842
MspR9I CCNGG 3 cut(s) 284, 504, 965
MunI CAATTG 1 cut(s) 889
MvaI CCWGG 3 cut(s) 284, 504, 965
NdeII GATC 3 cut(s) 644, 706, 1007
NlaIII CATG 6 cut(s) 206, 492, 589, 690, 811, 937
NmuCI GTSAC 3 cut(s) 121, 254, 459
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 5 cut(s) 206, 492, 690, 811, 937
PaeI GCATGC 1 cut(s) 937
PagI TCATGA 1 cut(s) 585
PciI ACATGT 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 17, 368, 597
PflMI CCANNNNNTGG 1 cut(s) 964
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 2 cut(s) 299, 340
PscI ACATGT 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 282, 502, 963
PspGI CCWGG 3 cut(s) 282, 502, 963
PspPI GGNCC 2 cut(s) 527, 579
PsuI RGATCY 1 cut(s) 644
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 5 cut(s) 176, 429, 485, 621, 842
SatI GCNGC 2 cut(s) 298, 339
Sau3AI GATC 3 cut(s) 644, 706, 1007
Sau96I GGNCC 2 cut(s) 527, 579
ScrFI CCNGG 3 cut(s) 284, 504, 965
SfaNI GCATC 4 cut(s) 230, 309, 412, 868
SinI GGWCC 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 186, 612
SmoI CTYRAG 2 cut(s) 186, 612
SphI GCATGC 1 cut(s) 937
Sse9I AATT 9 cut(s) 266, 278, 413, 467, 482, 711, 779, 889, 968
SsiI CCGC 1 cut(s) 654
SspMI CTAG 3 cut(s) 86, 477, 603
StyD4I CCNGG 3 cut(s) 282, 502, 963
TaqI TCGA 1 cut(s) 1006
TaqII GACCGA 1 cut(s) 183
TasI AATT 9 cut(s) 266, 278, 413, 467, 482, 711, 779, 889, 968
TfiI GAWTC 3 cut(s) 17, 368, 597
Tru1I TTAA 5 cut(s) 176, 429, 485, 621, 842
Tru9I TTAA 5 cut(s) 176, 429, 485, 621, 842
TseFI GTSAC 3 cut(s) 121, 254, 459
TseI GCWGC 2 cut(s) 297, 338
Tsp45I GTSAC 3 cut(s) 121, 254, 459
TspDTI ATGAA 1 cut(s) 750
TspGWI ACGGA 1 cut(s) 639
Van91I CCANNNNNTGG 1 cut(s) 964
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 2 cut(s) 278, 779
XbaI TCTAGA 1 cut(s) 85
XceI RCATGY 5 cut(s) 206, 492, 690, 811, 937
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 3 cut(s) 86, 477, 603
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.