pycom07g06980

malic enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
6329906 .. 6340246
10341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06980.5

Sequence Viewer

Length: 1353 bp
ATGATGTCCATGGTTTATAACTGGCCAGCTGATCAGGTTGATATGATTGTTGTTACTGATGGGAGCAGAATATTGGGTCTTGGAGACCTTGGAGTCCAGGGAATTGGAATTGCGATTGGGAAGCTAGATTTATATGTTGCTGCTGCTGGAATAAACCCTCAAAGAGTACTTCCTGTGATGATTGATGTGGGAACTAACAATGAAAAGCTGCTCAAAGACCCGTTGTATTTGGGATTGGATAGACATCGTCTTGATGGTGATGAATATGTTGCTGTTGTTGATGAATTTATGGAAGCTGTGTTTACTCGTTGGCCAAATGTGATTGTGCAGTTTGAAGACTTCCAAAGCAAATGGGCCTTTAAGTTGTTACAGCGTTACAGAAGTACCTATCGAATGTTTAATGATGATGTTCAGGGAACAGCAGGAGTTGCATTAGCTGGACTTTTAGGAGCCGTAAGGGCACAAGGAAGGTCAATGATTGACTTCCCTAAACAAAAAATTGTTGTTGCTGGTGCTGGAAGTGCAGGAATAGGGGTTCTTAATGCTGCACGGAAGACAATGGCAAGGATGTTAGGAAACAATGAAGATGCATTTCATAGTGCAGGCAGACAATTCTGGGTGGTTGATGCCAAGGGTCTGATCACAGAGGAACGTGAAGAAATCGATCCAGATGCCCGTCCATTTGCAAGGAAAGTCAAAGAAATTAATCGTCAAGGGTTAAGAGAAGGCGCAAGTCTTGTGGAAGTGGTCAATCAAGTCAAACCTGATGTGCTGCTTGGACTTTCTGCAGTCGGGGGATTGTTCTCAAAAGAGGTATTAGAGGCCCTTAGAAGTTCAACATCAACTAGACCAGCCATCTTTGCAATGTCAAATCCAACAACAAATGCTGAGTGTACTCCCGAAGAAGCATTCTCTATTGTGGGTGATAATATTGTTTTTGCAAGTGGAAGTCCATTCAAAGATGTGAATCTTGGAAATGGCCATATTGGGCACTGCAACCAGGGAAACAACATGTACCTTTTTCCAGGTATTGGACTTGGTACTCTATTATCTGGCTCCAGAATCGTCTCCGATGGCATGCTGCAGGCCGCAGCCGAGTGCCTAGCAGCATATATGTCAGATGAGGATGTTCTTAAAGGGATTATCTACCCTTCTATATCTAGCATACGAGATATCACAAAGGAGGTGGCTGCAGCTGTGATAAAGGAAGCCATAGAAGAGGATCTAGCCGAAGGGTACCGCGAACTGGATGCTCGAGAGCTGCGGAAACTTAGTCAGGAAGAAATCAAAGAATTTGTGCTGAACAACATGTGGAGTCCAGAATACCCGACACTAGTTTACAGAGACGAATGA

Protein Analysis

451

Amino Acids

49.23

Weight (kDa)

4.9

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 1236
AccB1I GGYRCC 1 cut(s) 1236
AccB7I CCANNNNNTGG 1 cut(s) 1031
AccII CGCG 1 cut(s) 1242
AciI CCGC 3 cut(s) 1089, 1240, 1264
AclWI GGATC 2 cut(s) 659, 1230
AcoI YGGCCR 3 cut(s) 23, 311, 979
AcsI RAATTY 2 cut(s) 284, 1292
AfaI GTAC 6 cut(s) 168, 385, 895, 1016, 1042, 1238
AfiI CCNNNNNNNGG 2 cut(s) 1031, 1246
AflIII ACRYGT 2 cut(s) 1011, 1308
AgsI TTSAA 3 cut(s) 335, 837, 958
AhlI ACTAGT 1 cut(s) 1333
AjnI CCWGG 3 cut(s) 96, 999, 1024
AloI GAACNNNNNNTCC 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 29, 124, 208, 296, 437, 1196, 1261
AluI AGCT 7 cut(s) 29, 124, 208, 296, 437, 1196, 1261
Alw26I GTCTC 3 cut(s) 78, 1072, 1338
AlwI GGATC 2 cut(s) 659, 1230
Ama87I CYCGRG 1 cut(s) 1254
AoxI GGCC 6 cut(s) 23, 311, 354, 822, 979, 1086
ApoI RAATTY 2 cut(s) 284, 1292
AseI ATTAAT 1 cut(s) 705
Asp718I GGTACC 1 cut(s) 1236
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 2 cut(s) 354, 823
AsuHPI GGTGA 2 cut(s) 269, 935
AvaI CYCGRG 1 cut(s) 1254
BaeGI GKGCMC 2 cut(s) 463, 993
BaeI ACNNNNGTAYC 2 cut(s) 367, 400
BalI TGGCCA 3 cut(s) 25, 313, 981
BanI GGYRCC 1 cut(s) 1236
BbsI GAAGAC 2 cut(s) 342, 560
BccI CCATC 4 cut(s) 53, 248, 863, 1067
BceAI ACGGC 1 cut(s) 437
BcgI CGANNNNNNTGC 4 cut(s) 653, 687, 1232, 1266
BciT130I CCWGG 3 cut(s) 98, 1001, 1026
BclI TGATCA 2 cut(s) 31, 639
BcoDI GTCTC 3 cut(s) 78, 1072, 1338
BcuI ACTAGT 1 cut(s) 1333
BfaI CTAG 6 cut(s) 125, 846, 1103, 1161, 1226, 1334
BfmI CTRYAG 3 cut(s) 786, 1082, 1191
BglI GCCNNNNNGGC 1 cut(s) 458
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 3 cut(s) 98, 1001, 1026
BmeT110I CYCGRG 1 cut(s) 1254
BmgT120I GGNCC 2 cut(s) 354, 823
BmiI GGNNCC 3 cut(s) 451, 1057, 1238
BmrFI CCNGG 3 cut(s) 98, 1001, 1026
BmsI GCATC 4 cut(s) 577, 616, 661, 1240
BpiI GAAGAC 2 cut(s) 342, 560
BpmI CTGGAG 1 cut(s) 1042
Bsa29I ATCGAT 1 cut(s) 663
BsaBI GATNNNNATC 2 cut(s) 243, 966
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 5 cut(s) 9, 88, 97, 630, 1000
Bsc4I CCNNNNNNNGG 2 cut(s) 1031, 1246
Bse1I ACTGG 2 cut(s) 26, 1251
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 2 cut(s) 243, 966
BseBI CCWGG 3 cut(s) 98, 1001, 1026
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 5 cut(s) 9, 88, 97, 630, 1000
BseGI GGATG 3 cut(s) 573, 1132, 1255
BseJI GATNNNNATC 2 cut(s) 243, 966
BseLI CCNNNNNNNGG 2 cut(s) 1031, 1246
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 2 cut(s) 26, 1251
BseSI GKGCMC 2 cut(s) 463, 993
BsgI GTGCAG 4 cut(s) 347, 531, 543, 621
Bsh1236I CGCG 1 cut(s) 1242
BshFI GGCC 6 cut(s) 25, 313, 356, 824, 981, 1088
BshNI GGYRCC 1 cut(s) 1236
BshVI ATCGAT 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 1254
BslI CCNNNNNNNGG 2 cut(s) 1031, 1246
BsmAI GTCTC 3 cut(s) 78, 1072, 1338
BsmBI CGTCTC 2 cut(s) 1072, 1338
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 6 cut(s) 25, 313, 356, 824, 981, 1088
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 1254
Bsp1286I GDGCHC 2 cut(s) 463, 993
Bsp143I GATC 4 cut(s) 31, 639, 664, 1222
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 1089, 1240, 1264
BspANI GGCC 6 cut(s) 25, 313, 356, 824, 981, 1088
BspCNI CTCAG 1 cut(s) 880
BspDI ATCGAT 1 cut(s) 663
BspFNI CGCG 1 cut(s) 1242
BspLI GGNNCC 3 cut(s) 451, 1057, 1238
BspMAI CTGCAG 3 cut(s) 790, 1086, 1195
BspPI GGATC 2 cut(s) 659, 1230
BspT107I GGYRCC 1 cut(s) 1236
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 2 cut(s) 26, 1251
BssECI CCNNGG 5 cut(s) 9, 88, 97, 630, 1000
BssMI GATC 4 cut(s) 31, 639, 664, 1222
BssT1I CCWWGG 3 cut(s) 9, 88, 630
Bst2UI CCWGG 3 cut(s) 98, 1001, 1026
Bst6I CTCTTC 1 cut(s) 1212
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 4 cut(s) 27, 604, 1079, 1086
BstDEI CTNAG 3 cut(s) 827, 888, 1271
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 573, 1132, 1255
BstFNI CGCG 1 cut(s) 1242
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 4 cut(s) 34, 642, 667, 1225
BstMAI GTCTC 3 cut(s) 78, 1072, 1338
BstMBI GATC 4 cut(s) 31, 639, 664, 1222
BstMWI GCNNNNNNNGC 4 cut(s) 428, 458, 521, 860
BstNI CCWGG 3 cut(s) 98, 1001, 1026
BstNSI RCATGY 3 cut(s) 1015, 1081, 1312
BstSCI CCNGG 3 cut(s) 96, 999, 1024
BstSFI CTRYAG 3 cut(s) 786, 1082, 1191
BstSLI GKGCMC 2 cut(s) 463, 993
BstUI CGCG 1 cut(s) 1242
BstV2I GAAGAC 2 cut(s) 342, 560
BstX2I RGATCY 1 cut(s) 1222
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 1 cut(s) 1222
Bsu15I ATCGAT 1 cut(s) 663
BsuRI GGCC 6 cut(s) 25, 313, 356, 824, 981, 1088
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 3 cut(s) 573, 1132, 1255
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 4 cut(s) 27, 604, 1079, 1086
CfoI GCGC 1 cut(s) 731
Cfr13I GGNCC 2 cut(s) 354, 823
ClaI ATCGAT 1 cut(s) 663
Csp6I GTAC 6 cut(s) 167, 384, 894, 1015, 1041, 1237
CspCI CAANNNNNGTGG 4 cut(s) 720, 755, 1167, 1202
CviAII CATG 4 cut(s) 10, 1012, 1078, 1309
CviQI GTAC 6 cut(s) 167, 384, 894, 1015, 1041, 1237
DdeI CTNAG 3 cut(s) 827, 888, 1271
DpnI GATC 4 cut(s) 33, 641, 666, 1224
DpnII GATC 4 cut(s) 31, 639, 664, 1222
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 3 cut(s) 23, 311, 979
Eam1104I CTCTTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 1212
Eco130I CCWWGG 3 cut(s) 9, 88, 630
Eco31I GGTCTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 1174
Eco88I CYCGRG 1 cut(s) 1254
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 3 cut(s) 96, 999, 1024
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 3 cut(s) 9, 88, 630
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 3 cut(s) 9, 88, 630
Esp3I CGTCTC 2 cut(s) 1072, 1338
FaeI CATG 4 cut(s) 13, 1015, 1081, 1312
FatI CATG 4 cut(s) 9, 1011, 1077, 1308
FbaI TGATCA 2 cut(s) 31, 639
FokI GGATG 3 cut(s) 580, 1139, 1262
FspBI CTAG 6 cut(s) 125, 846, 1103, 1161, 1226, 1334
GlaI GCGC 1 cut(s) 730
GsuI CTGGAG 1 cut(s) 1042
HaeIII GGCC 6 cut(s) 25, 313, 356, 824, 981, 1088
HhaI GCGC 1 cut(s) 731
Hin1II CATG 4 cut(s) 13, 1015, 1081, 1312
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HinfI GANTC 4 cut(s) 93, 967, 1062, 1315
HphI GGTGA 2 cut(s) 269, 935
Hpy166II GTNNAC 3 cut(s) 303, 894, 1339
Hpy188I TCNGA 3 cut(s) 639, 1072, 1120
Hpy188III TCNNGA 7 cut(s) 251, 668, 899, 1059, 1256, 1277, 1319
Hpy8I GTNNAC 3 cut(s) 303, 894, 1339
HpyAV CCTTC 4 cut(s) 462, 719, 1161, 1226
HpyCH4IV ACGT 1 cut(s) 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 458, 521, 860
HpyF3I CTNAG 3 cut(s) 827, 888, 1271
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 4 cut(s) 13, 1015, 1081, 1312
HspAI GCGC 1 cut(s) 729
KpnI GGTACC 1 cut(s) 1240
Ksp22I TGATCA 2 cut(s) 31, 639
Kzo9I GATC 4 cut(s) 31, 639, 664, 1222
LmnI GCTCC 3 cut(s) 63, 449, 1061
LweI GCATC 4 cut(s) 577, 616, 661, 1240
MaeI CTAG 6 cut(s) 125, 846, 1103, 1161, 1226, 1334
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 3 cut(s) 52, 366, 374
MalI GATC 4 cut(s) 33, 641, 666, 1224
MboI GATC 4 cut(s) 31, 639, 664, 1222
MboII GAAGA 7 cut(s) 347, 565, 596, 668, 914, 1229, 1292
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 2 cut(s) 463, 993
MlsI TGGCCA 3 cut(s) 25, 313, 981
MluCI AATT 7 cut(s) 102, 108, 284, 498, 611, 702, 1292
MluNI TGGCCA 3 cut(s) 25, 313, 981
MlyI GAGTC 2 cut(s) 102, 1324
MmeI TCCRAC 1 cut(s) 899
MnlI CCTC 7 cut(s) 168, 640, 805, 814, 1117, 1177, 1213
Mox20I TGGCCA 3 cut(s) 25, 313, 981
Mph1103I ATGCAT 1 cut(s) 592
MscI TGGCCA 3 cut(s) 25, 313, 981
MseI TTAA 6 cut(s) 360, 399, 540, 705, 719, 1134
Msp20I TGGCCA 3 cut(s) 25, 313, 981
MspA1I CMGCKG 2 cut(s) 29, 1196
MspR9I CCNGG 3 cut(s) 98, 1001, 1026
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 3 cut(s) 98, 1001, 1026
MvnI CGCG 1 cut(s) 1242
MwoI GCNNNNNNNGC 4 cut(s) 428, 458, 521, 860
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 31, 639, 664, 1222
NlaIII CATG 4 cut(s) 13, 1015, 1081, 1312
NlaIV GGNNCC 3 cut(s) 451, 1057, 1238
NmeAIII GCCGAG 1 cut(s) 1120
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 3 cut(s) 1015, 1081, 1312
PaeI GCATGC 1 cut(s) 1081
PaeR7I CTCGAG 1 cut(s) 1254
PciI ACATGT 2 cut(s) 1011, 1308
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 967, 1062
PflFI GACNNNGTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 1031
PleI GAGTC 2 cut(s) 101, 1323
PpsI GAGTC 2 cut(s) 101, 1323
PscI ACATGT 2 cut(s) 1011, 1308
PshBI ATTAAT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 96, 999, 1024
PspGI CCWGG 3 cut(s) 96, 999, 1024
PspN4I GGNNCC 3 cut(s) 451, 1057, 1238
PspPI GGNCC 2 cut(s) 354, 823
PstI CTGCAG 3 cut(s) 790, 1086, 1195
PsuI RGATCY 1 cut(s) 1222
PsyI GACNNNGTC 1 cut(s) 246
PvuII CAGCTG 2 cut(s) 29, 1196
RsaI GTAC 6 cut(s) 168, 385, 895, 1016, 1042, 1238
RsaNI GTAC 6 cut(s) 167, 384, 894, 1015, 1041, 1237
SaqAI TTAA 6 cut(s) 360, 399, 540, 705, 719, 1134
Sau3AI GATC 4 cut(s) 31, 639, 664, 1222
Sau96I GGNCC 2 cut(s) 354, 823
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 2 cut(s) 102, 1324
ScrFI CCNGG 3 cut(s) 98, 1001, 1026
SduI GDGCHC 2 cut(s) 463, 993
SfaNI GCATC 4 cut(s) 577, 616, 661, 1240
SfcI CTRYAG 3 cut(s) 786, 1082, 1191
Sfr274I CTCGAG 1 cut(s) 1254
SlaI CTCGAG 1 cut(s) 1254
SmlI CTYRAG 1 cut(s) 1254
SmoI CTYRAG 1 cut(s) 1254
SpeI ACTAGT 1 cut(s) 1333
SphI GCATGC 1 cut(s) 1081
Sse9I AATT 7 cut(s) 102, 108, 284, 498, 611, 702, 1292
SsiI CCGC 3 cut(s) 1089, 1240, 1264
SspI AATATT 2 cut(s) 72, 931
SspMI CTAG 6 cut(s) 125, 846, 1103, 1161, 1226, 1334
StyD4I CCNGG 3 cut(s) 96, 999, 1024
StyI CCWWGG 3 cut(s) 9, 88, 630
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 391, 663, 1255
TasI AATT 7 cut(s) 102, 108, 284, 498, 611, 702, 1292
TatI WGTACW 2 cut(s) 166, 893
TauI GCSGC 1 cut(s) 1091
TfiI GAWTC 2 cut(s) 967, 1062
Tru1I TTAA 6 cut(s) 360, 399, 540, 705, 719, 1134
Tru9I TTAA 6 cut(s) 360, 399, 540, 705, 719, 1134
TscAI CASTG 1 cut(s) 998
TspDTI ATGAA 5 cut(s) 216, 276, 297, 584, 597
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 1 cut(s) 998
Tth111I GACNNNGTC 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 1031
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 2 cut(s) 284, 1292
XceI RCATGY 3 cut(s) 1015, 1081, 1312
XhoI CTCGAG 1 cut(s) 1254
XspI CTAG 6 cut(s) 125, 846, 1103, 1161, 1226, 1334
ZrmI AGTACT 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.