pycom07g17590

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017364
Physical Location & Seq
Forward (+)
20104144 .. 20104816
673 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17590.1

Sequence Viewer

Length: 591 bp
ATGGGGAATCTCTTCTTTCTCAAATCAGTTGTTTCTTACTTTCACTCACCACCTCTCACCACAAAAATGAAGAGACTAAGCATCTTAACTGTCGTTGCAATAGCCTTCATCACTTCTCTGCCAGTCCAAGGATCCAGCACAAACTGCTCCTACTCCGTCGAGATTGAGACAACATGTGCACGATCAGCCGCAACCTCGGACCATGTCAGCGTCAGGTTCGGGGTCTCCGAGGGTAATTTGATCATAGTGAAGCATCTGAACAACCCTAAGCCATTGTATGCTGCAAACGGTGGTGTGAGACGTCGGGGGTATGGCGGCTTTGGACGATGTGCCATAGACATGTTTGAGGCCAGTGGACAATGCATGAGCCGGAGGGTGTGCTCTCTGTACCTGAAGAAGGTTGGGTCGGATGACTGGCGGCCTGGCTGGGTGAAGGTGCTTCATCGACAGGATGGCGGCCGGGTGGTAGTGCCGGGTTCTTACATATTCTATTTTAGAACGTTTGTTCCAGAAAATGTATGGTATGGATTTGATTATTGTCACTCCAAAGGTGGTGGTTTTGTGCCCCCTGTTGTTAGTTTTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

197

Amino Acids

21.68

Weight (kDa)

9.51

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 43 - 180 4.2e-36 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 304
AciI CCGC 4 cut(s) 189, 315, 418, 456
AclI AACGTT 1 cut(s) 500
AclWI GGATC 2 cut(s) 126, 139
AcoI YGGCCR 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 128, 397
AflIII ACRYGT 2 cut(s) 173, 339
AjnI CCWGG 1 cut(s) 421
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
Alw21I GWGCWC 2 cut(s) 181, 383
Alw26I GTCTC 4 cut(s) 67, 161, 229, 292
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 2 cut(s) 126, 139
AoxI GGCC 3 cut(s) 348, 419, 457
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 461, 474
AsuHPI GGTGA 3 cut(s) 39, 49, 442
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 2 cut(s) 181, 567
BamHI GGATCC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 181, 383
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 423
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 2 cut(s) 461, 474
BcoDI GTCTC 4 cut(s) 67, 161, 229, 292
BisI GCNGC 5 cut(s) 189, 282, 316, 419, 457
BlsI GCNGC 5 cut(s) 190, 283, 317, 420, 458
Bme1390I CCNGG 3 cut(s) 423, 461, 474
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 3 cut(s) 423, 461, 474
BmsI GCATC 2 cut(s) 90, 262
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 461, 474
BsaHI GRCGYC 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 127, 195, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 397
Bse1I ACTGG 3 cut(s) 122, 351, 419
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 127, 195, 228
BseGI GGATG 2 cut(s) 415, 457
BseLI CCNNNNNNNGG 2 cut(s) 128, 397
BseNI ACTGG 3 cut(s) 122, 351, 419
BseSI GKGCMC 2 cut(s) 181, 567
BseX3I CGGCCG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 3 cut(s) 350, 421, 459
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 181, 383
BsiSI CCGG 3 cut(s) 370, 460, 473
BslI CCNNNNNNNGG 2 cut(s) 128, 397
BsmAI GTCTC 4 cut(s) 67, 161, 229, 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 3 cut(s) 350, 421, 459
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 181, 383, 567
Bsp143I GATC 3 cut(s) 131, 182, 240
BspACI CCGC 4 cut(s) 189, 315, 418, 456
BspANI GGCC 3 cut(s) 350, 421, 459
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 126, 139
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 3 cut(s) 122, 351, 419
BssECI CCNNGG 3 cut(s) 127, 195, 228
BssMI GATC 3 cut(s) 131, 182, 240
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 91, 290
Bst6I CTCTTC 2 cut(s) 17, 65
BstACI GRCGYC 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 77, 267
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 415, 457
BstKTI GATC 3 cut(s) 134, 185, 243
BstMAI GTCTC 4 cut(s) 67, 161, 229, 292
BstMBI GATC 3 cut(s) 131, 182, 240
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 144, 185
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 177, 343
BstSCI CCNGG 3 cut(s) 421, 459, 472
BstSLI GKGCMC 2 cut(s) 181, 567
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 457
BsuRI GGCC 3 cut(s) 350, 421, 459
BtsCI GGATG 2 cut(s) 415, 457
BtsIMutI CAGTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 4 cut(s) 174, 203, 340, 364
CviJI RGCY 9 cut(s) 104, 188, 271, 318, 350, 369, 421, 426, 459
CviKI_1 RGCY 9 cut(s) 104, 188, 271, 318, 350, 369, 421, 426, 459
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 77, 267
DpnI GATC 3 cut(s) 133, 184, 242
DpnII GATC 3 cut(s) 131, 182, 240
EaeI YGGCCR 1 cut(s) 457
EagI CGGCCG 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 17, 65
EarI CTCTTC 2 cut(s) 17, 65
EclXI CGGCCG 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 4 cut(s) 177, 206, 343, 367
FatI CATG 4 cut(s) 173, 202, 339, 363
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 189, 282, 316, 419, 457
FokI GGATG 2 cut(s) 422, 464
Fsp4HI GCNGC 5 cut(s) 189, 282, 316, 419, 457
GluI GCNGC 5 cut(s) 189, 282, 316, 419, 457
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 3 cut(s) 350, 421, 459
HapII CCGG 3 cut(s) 370, 460, 473
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 177, 206, 343, 367
HinfI GANTC 1 cut(s) 7
HpaII CCGG 3 cut(s) 370, 460, 473
HphI GGTGA 3 cut(s) 39, 49, 442
Hpy166II GTNNAC 2 cut(s) 179, 356
Hpy188I TCNGA 4 cut(s) 199, 229, 258, 409
Hpy188III TCNNGA 2 cut(s) 160, 509
Hpy8I GTNNAC 2 cut(s) 179, 356
Hpy99I CGWCG 2 cut(s) 161, 306
HpyAV CCTTC 3 cut(s) 115, 391, 427
HpyCH4III ACNGT 2 cut(s) 91, 290
HpyCH4IV ACGT 2 cut(s) 301, 500
HpyCH4V TGCA 4 cut(s) 98, 179, 284, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 185
HpyF3I CTNAG 2 cut(s) 77, 267
HpySE526I ACGT 2 cut(s) 301, 500
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 177, 206, 343, 367
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 131, 182, 240
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 90, 262
MaeII ACGT 2 cut(s) 301, 500
MaeIII GTNAC 1 cut(s) 539
MalI GATC 3 cut(s) 133, 184, 242
MboI GATC 3 cut(s) 131, 182, 240
MboII GAAGA 3 cut(s) 4, 82, 406
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 181, 383, 567
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 5 cut(s) 63, 205, 223, 340, 366
Mph1103I ATGCAT 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 2 cut(s) 86, 582
MslI CAYNNNNRTG 2 cut(s) 65, 338
MspI CCGG 3 cut(s) 370, 460, 473
MspR9I CCNGG 3 cut(s) 423, 461, 474
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 144, 185
NciI CCSGG 2 cut(s) 461, 474
NdeII GATC 3 cut(s) 131, 182, 240
NlaIII CATG 4 cut(s) 177, 206, 343, 367
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 2 cut(s) 177, 343
PciI ACATGT 2 cut(s) 173, 339
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 5 cut(s) 190, 283, 317, 420, 458
PscI ACATGT 2 cut(s) 173, 339
Psp1406I AACGTT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 65, 338
SaqAI TTAA 2 cut(s) 86, 582
SatI GCNGC 5 cut(s) 189, 282, 316, 419, 457
Sau3AI GATC 3 cut(s) 131, 182, 240
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 423, 461, 474
SduI GDGCHC 3 cut(s) 181, 383, 567
SetI ASST 9 cut(s) 55, 197, 218, 304, 393, 402, 438, 503, 553
SfaNI GCATC 2 cut(s) 90, 262
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 65, 338
Sse9I AATT 1 cut(s) 235
SsiI CCGC 4 cut(s) 189, 315, 418, 456
StyD4I CCNGG 3 cut(s) 421, 459, 472
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 91, 290
TaiI ACGT 2 cut(s) 304, 503
TaqI TCGA 2 cut(s) 159, 445
TasI AATT 1 cut(s) 235
TauI GCSGC 4 cut(s) 191, 318, 421, 459
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 86, 582
Tru9I TTAA 2 cut(s) 86, 582
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 83, 97, 431
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 358
Tth111I GACNNNGTC 1 cut(s) 203
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 395
XceI RCATGY 2 cut(s) 177, 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 11
ZraI GACGTC 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.