Rorug01G0318200

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017364
Physical Location & Seq
Forward (+)
43681731 .. 43682063
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0318200.1

Sequence Viewer

Length: 333 bp
ATGCAAAAGTGCCGATGTTGCTCACGGAGGCTCAAGGCGACGCGGATGGCGGCTCTGATTCTGTCCTCGAAGACCAGGGACACCTCAGACGGCGTCACAATTAAGTTGAGGGCCAACGTGATCGAAGTCGGAGGTCAGCTCCAGAAGTTCTACAGAAACTCCGAGCAAACCAATTTCGACTTCGAACTCGTCATTGAGGAGTCCACCGGCAGGAAAAATCTCAAGATGGAGGTCTGGTTAGGCACTGGCAAGATTAGAGCCACCACCCGCGCTGCCCCGAACCGTTCTGAGCGACGTCTGCACTGTTGCATGTTTGCGGACGTCCGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

110

Amino Acids

12.61

Weight (kDa)

10.13

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 298, 324
AccII CGCG 2 cut(s) 43, 270
AciI CCGC 5 cut(s) 43, 50, 268, 317, 325
AcyI GRCGYC 3 cut(s) 93, 295, 321
AfiI CCNNNNNNNGG 1 cut(s) 210
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 111
AsuII TTCGAA 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 259
BccI CCATC 2 cut(s) 40, 220
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 2 cut(s) 51, 273
BlsI GCNGC 2 cut(s) 52, 274
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 17, 206
BsaHI GRCGYC 3 cut(s) 93, 295, 321
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 99, 279
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 43, 270
BshFI GGCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 5 cut(s) 43, 50, 268, 317, 325
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 98, 280
BspFNI CGCG 2 cut(s) 43, 270
BspT104I TTCGAA 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 3 cut(s) 93, 295, 321
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 284, 305
BstACI GRCGYC 3 cut(s) 93, 295, 321
BstBI TTCGAA 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 85, 288
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 2 cut(s) 43, 270
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 18, 298
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 2 cut(s) 43, 270
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 243, 301
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 111
CseI GACGC 2 cut(s) 49, 82
CviAII CATG 1 cut(s) 310
CviJI RGCY 5 cut(s) 31, 53, 113, 139, 260
CviKI_1 RGCY 5 cut(s) 31, 53, 113, 139, 260
DdeI CTNAG 2 cut(s) 85, 288
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 313
FaiI YATR 1 cut(s) 311
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 51, 273
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 51, 273
GlaI GCGC 1 cut(s) 271
GluI GCNGC 2 cut(s) 51, 273
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 207
HgaI GACGC 2 cut(s) 49, 82
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 3 cut(s) 93, 295, 321
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 2 cut(s) 58, 200
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 6 cut(s) 57, 88, 131, 163, 289, 332
Hpy188III TCNNGA 2 cut(s) 142, 223
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 43, 297
HpyCH4III ACNGT 2 cut(s) 284, 305
HpyCH4IV ACGT 3 cut(s) 117, 295, 321
HpyCH4V TGCA 3 cut(s) 4, 301, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 298
HpyF3I CTNAG 2 cut(s) 85, 288
HpySE526I ACGT 3 cut(s) 117, 295, 321
Hsp92I GRCGYC 3 cut(s) 93, 295, 321
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 7 cut(s) 61, 88, 155, 196, 220, 220, 231
Lsp1109I GCAGC 1 cut(s) 259
MaeII ACGT 3 cut(s) 117, 295, 321
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 82
MluCI AATT 2 cut(s) 99, 172
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 7 cut(s) 21, 76, 94, 102, 125, 190, 223
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 2 cut(s) 43, 270
MwoI GCNNNNNNNGC 2 cut(s) 18, 298
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 313
NspV TTCGAA 1 cut(s) 183
PfeI GAWTC 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 52, 274
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspPI GGNCC 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 51, 273
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 76
SetI ASST 7 cut(s) 86, 120, 136, 141, 234, 298, 324
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 32, 221
SmoI CTYRAG 2 cut(s) 32, 221
Sse9I AATT 2 cut(s) 99, 172
SsiI CCGC 5 cut(s) 43, 50, 268, 317, 325
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 284, 305
TaiI ACGT 3 cut(s) 120, 298, 324
TaqI TCGA 4 cut(s) 68, 123, 177, 183
TasI AATT 2 cut(s) 99, 172
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 250, 308
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 2 cut(s) 250, 308
Tth111I GACNNNGTC 1 cut(s) 92
XceI RCATGY 1 cut(s) 313
ZraI GACGTC 2 cut(s) 296, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.