Rh1DG319800

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017364
Physical Location & Seq
Forward (+)
54535343 .. 54535897
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG319800.1

Sequence Viewer

Length: 555 bp
ATGCCAAAGCTTCCAATGAAGGCAATAAGCATTTTGAGTATTTCTTCACTAGTCTTCTTCATTTCTCTGCAAACCAATGCAATGCATCCTATCAACCAAGGAGCCAAACCAAACTGCACCTACTCCATTGAGATTGAGACAACCTGTGCACAATCTGCCGAAACCACAGACCATGTCAGCGTCAGATTCAGCGACTCCAAGGGTAATCTGATCATAGTGAAGCATCTGAACAACCCTAAGCTCTTGTATGCTCCGAAAGGTGGTTCAAAACATGGAGGGTATGGCGGGTTTGGAAGATGTGCCATAGACGTGTTTGAGGCCAGTGGACCATGCATGAGCTCAAGGGTGTGCTCTCTGTACCTGAAGAAAGTCGGATCAGATGACTGGCGACCTGGCTGGGTGAAGGTGCTACATCGACAAGATGGTGGCCATGAAGTACCAGTTTCTTATGTGTTCTATTTTAGGACATTTGTTCCAGAAAACGTTTGGTATGGCTTTGATTATTGTCACTCCAAGGGTGGTCTTGTACCTCATGTTGTCAGTTTTGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

184

Amino Acids

20.34

Weight (kDa)

8.5

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 31 - 169 7.5e-37 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclI AACGTT 1 cut(s) 483
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 3 cut(s) 359, 438, 528
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 267
AhlI ACTAGT 1 cut(s) 49
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 3 cut(s) 10, 241, 339
AluI AGCT 3 cut(s) 10, 241, 339
Alw21I GWGCWC 3 cut(s) 151, 341, 353
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 1 cut(s) 382
AoxI GGCC 2 cut(s) 318, 427
ApaLI GTGCAC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 151, 341, 353
BccI CCATC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 393
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 553
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 94, 232
BpiI GAAGAC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 97, 198, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 321, 389, 440
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 97, 198, 513
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 321, 389, 440
BseSI GKGCMC 1 cut(s) 151
BseYI CCCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 2 cut(s) 320, 429
BsiHKAI GWGCWC 3 cut(s) 151, 341, 353
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 320, 429
Bsp1286I GDGCHC 3 cut(s) 151, 341, 353
Bsp143I GATC 2 cut(s) 210, 374
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 320, 429
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 3 cut(s) 321, 389, 440
BssECI CCNNGG 3 cut(s) 97, 198, 513
BssMI GATC 2 cut(s) 210, 374
BssT1I CCWWGG 3 cut(s) 97, 198, 513
Bst2UI CCWGG 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 213, 377
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 210, 374
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 2 cut(s) 320, 429
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 358, 437, 527
CviAII CATG 6 cut(s) 173, 272, 330, 334, 431, 533
CviJI RGCY 8 cut(s) 10, 104, 241, 320, 339, 396, 429, 495
CviKI_1 RGCY 8 cut(s) 10, 104, 241, 320, 339, 396, 429, 495
CviQI GTAC 3 cut(s) 358, 437, 527
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 212, 376
DpnII GATC 2 cut(s) 210, 374
EaeI YGGCCR 1 cut(s) 427
Ecl136II GAGCTC 1 cut(s) 339
Eco130I CCWWGG 3 cut(s) 97, 198, 513
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 97, 198, 513
EcoT22I ATGCAT 2 cut(s) 87, 335
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 3 cut(s) 97, 198, 513
FaeI CATG 6 cut(s) 176, 275, 333, 337, 434, 536
FatI CATG 6 cut(s) 172, 271, 329, 333, 430, 532
FauI CCCGC 1 cut(s) 278
FbaI TGATCA 1 cut(s) 210
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 341
FspBI CTAG 2 cut(s) 50, 553
GsaI CCCAGC 1 cut(s) 400
HaeIII GGCC 2 cut(s) 320, 429
HgaI GACGC 1 cut(s) 169
Hin1II CATG 6 cut(s) 176, 275, 333, 337, 434, 536
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 186, 194
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 149, 326
Hpy188I TCNGA 6 cut(s) 185, 210, 228, 255, 374, 379
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 2 cut(s) 149, 326
HpyAV CCTTC 2 cut(s) 13, 397
HpyCH4IV ACGT 2 cut(s) 309, 483
HpyCH4V TGCA 6 cut(s) 70, 80, 85, 117, 149, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 309, 483
Hsp92II CATG 6 cut(s) 176, 275, 333, 337, 434, 536
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 374
LmnI GCTCC 2 cut(s) 101, 256
LpnPI CCDG 9 cut(s) 157, 334, 370, 374, 378, 382, 405, 453, 489
LweI GCATC 2 cut(s) 94, 232
MaeI CTAG 2 cut(s) 50, 553
MaeII ACGT 2 cut(s) 309, 483
MaeIII GTNAC 1 cut(s) 506
MalI GATC 2 cut(s) 212, 376
MboI GATC 2 cut(s) 210, 374
MboII GAAGA 5 cut(s) 36, 46, 49, 306, 376
MhlI GDGCHC 3 cut(s) 151, 341, 353
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 3 cut(s) 269, 310, 540
Mox20I TGGCCA 1 cut(s) 429
Mph1103I ATGCAT 2 cut(s) 87, 335
MscI TGGCCA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 210, 374
NlaIII CATG 6 cut(s) 176, 275, 333, 337, 434, 536
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 2 cut(s) 87, 335
PfeI GAWTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 3 cut(s) 359, 438, 528
RsaNI GTAC 3 cut(s) 358, 437, 527
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 341
Sau3AI GATC 2 cut(s) 210, 374
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 3 cut(s) 151, 341, 353
SfaNI GCATC 2 cut(s) 94, 232
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 50, 553
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 3 cut(s) 97, 198, 513
TaiI ACGT 2 cut(s) 312, 486
TaqI TCGA 1 cut(s) 415
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 3 cut(s) 32, 49, 447
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 173
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XspI CTAG 2 cut(s) 50, 553
Zsp2I ATGCAT 2 cut(s) 87, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.