Rw1G028960

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017364
Physical Location & Seq
Forward (+)
56633771 .. 56634318
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028960.1

Sequence Viewer

Length: 516 bp
ATGAAGGCAATAAGCATTTTGAGTATTTCTTCACTAGTCTTCTTCATTTCTCTGCCAACCAATGCAATGCATCCTATCGACCATGGCTTCCAAGGAGCCAAACCAAACTGCACCTACTCCATTGAGATTGAGACAACCTGTGCACAATCTGCCGAAACCACAGATCATGTCAGCGTCAGATTCAGCGACTCCAAGGGTAATCTGATCATAGTGAAGCATCTGAACAACCCTAAGCTCTTGTATGGCGGGTTTGGAAGATGTGCCATAGACGTGTTTGAGGCCAGTGGACCATGCATGAGCTCAAGGGTGTGCTCTCTGTACCTGAAGAAAGTCGGATCAGATGACTGGCGACCTGGCTGGGTGAAGGTGCTACATCGACAAGATGGTGGCCATGAAGTACCAGTTTCTTATGTGTTCTATTTTAGGACATTTGTTCCAGAAAACGTTTGGTATGGCTTCGATTATTGTCACTCCAAGGGTGGTCTTGTACCTCATGTTGTCAGTTTTGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

171

Amino Acids

19.04

Weight (kDa)

6.69

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 33 - 156 3.6e-38 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclI AACGTT 1 cut(s) 444
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 3 cut(s) 320, 399, 489
AflIII ACRYGT 1 cut(s) 270
AhlI ACTAGT 1 cut(s) 34
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 235, 300
AluI AGCT 2 cut(s) 235, 300
Alw21I GWGCWC 3 cut(s) 145, 302, 314
Alw26I GTCTC 1 cut(s) 125
Alw44I GTGCAC 1 cut(s) 141
AlwI GGATC 1 cut(s) 343
AoxI GGCC 2 cut(s) 279, 388
ApaLI GTGCAC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 390
BanII GRGCYC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 3 cut(s) 145, 302, 314
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 514
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 79, 226
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 286
BsaJI CCNNGG 4 cut(s) 82, 91, 192, 474
Bse1I ACTGG 3 cut(s) 282, 350, 401
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 82, 91, 192, 474
BseGI GGATG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 282, 350, 401
BseSI GKGCMC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 94
BshFI GGCC 2 cut(s) 281, 390
BsiHKAI GWGCWC 3 cut(s) 145, 302, 314
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 281, 390
Bsp1286I GDGCHC 3 cut(s) 145, 302, 314
Bsp143I GATC 3 cut(s) 163, 204, 335
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 281, 390
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 3 cut(s) 282, 350, 401
BssECI CCNNGG 4 cut(s) 82, 91, 192, 474
BssMI GATC 3 cut(s) 163, 204, 335
BssT1I CCWWGG 4 cut(s) 82, 91, 192, 474
Bst2UI CCWGG 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 3 cut(s) 166, 207, 338
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 163, 204, 335
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 281, 390
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 319, 398, 488
CviAII CATG 6 cut(s) 83, 167, 291, 295, 392, 494
CviJI RGCY 8 cut(s) 87, 98, 235, 281, 300, 357, 390, 456
CviKI_1 RGCY 8 cut(s) 87, 98, 235, 281, 300, 357, 390, 456
CviQI GTAC 3 cut(s) 319, 398, 488
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 165, 206, 337
DpnII GATC 3 cut(s) 163, 204, 335
EaeI YGGCCR 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 4 cut(s) 82, 91, 192, 474
Eco24I GRGCYC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 4 cut(s) 82, 91, 192, 474
EcoT22I ATGCAT 2 cut(s) 72, 296
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 4 cut(s) 82, 91, 192, 474
FaeI CATG 6 cut(s) 86, 170, 294, 298, 395, 497
FatI CATG 6 cut(s) 82, 166, 290, 294, 391, 493
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 204
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 302
FspBI CTAG 2 cut(s) 35, 514
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 2 cut(s) 281, 390
HgaI GACGC 1 cut(s) 163
Hin1II CATG 6 cut(s) 86, 170, 294, 298, 395, 497
HinfI GANTC 2 cut(s) 180, 188
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 143, 287
Hpy188I TCNGA 5 cut(s) 179, 204, 222, 335, 340
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 2 cut(s) 143, 287
HpyAV CCTTC 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 270, 444
HpyCH4V TGCA 5 cut(s) 65, 70, 111, 143, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 270, 444
Hsp92II CATG 6 cut(s) 86, 170, 294, 298, 395, 497
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 3 cut(s) 163, 204, 335
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 9 cut(s) 151, 295, 331, 335, 339, 343, 366, 414, 450
LweI GCATC 2 cut(s) 79, 226
MaeI CTAG 2 cut(s) 35, 514
MaeII ACGT 2 cut(s) 270, 444
MaeIII GTNAC 1 cut(s) 467
MalI GATC 3 cut(s) 165, 206, 337
MboI GATC 3 cut(s) 163, 204, 335
MboII GAAGA 5 cut(s) 21, 31, 34, 267, 337
MhlI GDGCHC 3 cut(s) 145, 302, 314
MlsI TGGCCA 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 2 cut(s) 271, 501
Mox20I TGGCCA 1 cut(s) 390
Mph1103I ATGCAT 2 cut(s) 72, 296
MscI TGGCCA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 163, 204, 335
NlaIII CATG 6 cut(s) 86, 170, 294, 298, 395, 497
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 2 cut(s) 72, 296
PfeI GAWTC 1 cut(s) 180
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 3 cut(s) 320, 399, 489
RsaNI GTAC 3 cut(s) 319, 398, 488
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 302
Sau3AI GATC 3 cut(s) 163, 204, 335
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 3 cut(s) 145, 302, 314
SfaNI GCATC 2 cut(s) 79, 226
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SpeI ACTAGT 1 cut(s) 34
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 35, 514
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 4 cut(s) 82, 91, 192, 474
TaiI ACGT 2 cut(s) 273, 447
TaqI TCGA 3 cut(s) 78, 376, 459
TfiI GAWTC 1 cut(s) 180
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 17, 34, 408
TspRI CASTG 1 cut(s) 289
VneI GTGCAC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XspI CTAG 2 cut(s) 35, 514
Zsp2I ATGCAT 2 cut(s) 72, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.