Rroxscaffold_4G00291740

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017364
Physical Location & Seq
Reverse (-)
12127057 .. 12127539
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291740.1

Sequence Viewer

Length: 483 bp
ATGCATCCTATCAACCATGGCTTCCAAGGAGCCAAACCAAACTGCACCTACTCCATTGAGATTGAGACAACCTGTGCACAATCTGCCGAAACCACAGACCATGTCAGCGTCAGATTCAGCGACTCCAAGGGTGATCTGATCATAGTGAAGCATCTGAACAACCCTAAGCTCTTGTATGCTCCGAAAGGTGGTTCAAAACATGGAGGGTATGGCGGGTTTGGAAGATGTGCCATAGACGTGTTTGAGGCCAGTGGACCATGCATGAGCTCAAGGGTGTGCTCTCTGTACCTGAAGAAAGTCGGATCAGATGACTGGCGACCTGGCTGGGTGAAGGTGCTACATCGACAAGATGGTGGCCATGAAGTACCAGTTTCTTATGTGTTCTATTTTAGGACATTTGTTCCAGAAAACGTTTGGTATGGCTTTGATTATTGTCACTCCAAGGGTGGTCTTGTACCTCATGTCGTCAGTTTTGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

7.1

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 11 - 145 1.1e-35 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclI AACGTT 1 cut(s) 411
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 3 cut(s) 287, 366, 456
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 195
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 169, 267
AluI AGCT 2 cut(s) 169, 267
Alw21I GWGCWC 3 cut(s) 79, 269, 281
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 1 cut(s) 310
AoxI GGCC 2 cut(s) 246, 355
ApaLI GTGCAC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 143, 340
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 357
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 3 cut(s) 79, 269, 281
BccI CCATC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 13, 160
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 16, 25, 126, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 249, 317, 368
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 16, 25, 126, 441
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 3 cut(s) 249, 317, 368
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 2 cut(s) 248, 357
BsiHKAI GWGCWC 3 cut(s) 79, 269, 281
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 248, 357
Bsp1286I GDGCHC 3 cut(s) 79, 269, 281
Bsp143I GATC 3 cut(s) 133, 138, 302
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 248, 357
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 1 cut(s) 310
BsrI ACTGG 3 cut(s) 249, 317, 368
BssECI CCNNGG 4 cut(s) 16, 25, 126, 441
BssMI GATC 3 cut(s) 133, 138, 302
BssT1I CCWWGG 4 cut(s) 16, 25, 126, 441
Bst2UI CCWGG 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 3 cut(s) 136, 141, 305
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 133, 138, 302
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 79
BsuRI GGCC 2 cut(s) 248, 357
BtgI CCRYGG 1 cut(s) 16
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 97
Csp6I GTAC 3 cut(s) 286, 365, 455
CviAII CATG 7 cut(s) 17, 101, 200, 258, 262, 359, 461
CviJI RGCY 8 cut(s) 21, 32, 169, 248, 267, 324, 357, 423
CviKI_1 RGCY 8 cut(s) 21, 32, 169, 248, 267, 324, 357, 423
CviQI GTAC 3 cut(s) 286, 365, 455
DdeI CTNAG 1 cut(s) 165
DpnI GATC 3 cut(s) 135, 140, 304
DpnII GATC 3 cut(s) 133, 138, 302
EaeI YGGCCR 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 4 cut(s) 16, 25, 126, 441
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 4 cut(s) 16, 25, 126, 441
EcoT22I ATGCAT 2 cut(s) 6, 263
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 4 cut(s) 16, 25, 126, 441
FaeI CATG 7 cut(s) 20, 104, 203, 261, 265, 362, 464
FatI CATG 7 cut(s) 16, 100, 199, 257, 261, 358, 460
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 269
FspBI CTAG 1 cut(s) 481
GsaI CCCAGC 1 cut(s) 328
HaeIII GGCC 2 cut(s) 248, 357
HgaI GACGC 1 cut(s) 97
Hin1II CATG 7 cut(s) 20, 104, 203, 261, 265, 362, 464
HinfI GANTC 2 cut(s) 114, 122
HphI GGTGA 2 cut(s) 143, 340
Hpy166II GTNNAC 2 cut(s) 77, 254
Hpy188I TCNGA 6 cut(s) 113, 138, 156, 183, 302, 307
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 2 cut(s) 77, 254
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 2 cut(s) 237, 411
HpyCH4V TGCA 4 cut(s) 4, 45, 77, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 237, 411
Hsp92II CATG 7 cut(s) 20, 104, 203, 261, 265, 362, 464
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 133, 138, 302
LmnI GCTCC 2 cut(s) 29, 184
LpnPI CCDG 9 cut(s) 85, 262, 298, 302, 306, 310, 333, 381, 417
LweI GCATC 2 cut(s) 13, 160
MaeI CTAG 1 cut(s) 481
MaeII ACGT 2 cut(s) 237, 411
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 135, 140, 304
MboI GATC 3 cut(s) 133, 138, 302
MboII GAAGA 2 cut(s) 234, 304
MhlI GDGCHC 3 cut(s) 79, 269, 281
MlsI TGGCCA 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 3 cut(s) 197, 238, 468
Mox20I TGGCCA 1 cut(s) 357
Mph1103I ATGCAT 2 cut(s) 6, 263
MscI TGGCCA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 16
NdeII GATC 3 cut(s) 133, 138, 302
NlaIII CATG 7 cut(s) 20, 104, 203, 261, 265, 362, 464
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 6, 263
PfeI GAWTC 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 101
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 3 cut(s) 287, 366, 456
RsaNI GTAC 3 cut(s) 286, 365, 455
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 133, 138, 302
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 3 cut(s) 79, 269, 281
SfaNI GCATC 2 cut(s) 13, 160
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 481
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 4 cut(s) 16, 25, 126, 441
TaiI ACGT 2 cut(s) 240, 414
TaqI TCGA 1 cut(s) 343
TfiI GAWTC 1 cut(s) 114
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 101
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 411
XspI CTAG 1 cut(s) 481
Zsp2I ATGCAT 2 cut(s) 6, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.