Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009485

Physical Location & Seq

Genomic Coordinates Reverse (-)

20556569 .. 20558699

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGAATGGTTTTTTTCTTTTTGACGTGGCAAGAAAAGATAAGGTCATCGCCACAAGAATCCACACAAACACACACTGAGTCCACTTTTGTTCACAAACACCAAAAACCACTAACAATGGCGACCCTGCAGAACTCACCCTCCCTCCACAGGACCCCTGTCCTCAACTCCTTCACCAAGTTACACAAGCAAAACACATACCATTGCTGTAGAAAAAGCAATTCCTTTTTGGTAAGAGCAGAGCAGGCTTCAGCAACTTCTACATTCTTTCCTTCTCAAGATAGATGCGGGAGACGCCAAGTGCTAGCAGCAGGAACAATTGCTTCTTGGGCTCTTCTAACTAACCAACATTCTGTATCATTTGCTGCAGAAAATATCAAGGGATTTCTGCCTGTCACAGACAAGAAAGACGGATACGAATTTGTCTACCCTTTTGGATGGCAGGAAGTAACCATTGAAGGTCAAGACAAGGTATTCAAGGATGTCATTGAGCCGTTAGAGACTGCAAGTGTGACTCTGTTCCCAACCGTCAAGCAAGACATCAAAGAATTCGGGTCCCCACAACAGGTGGCTGAAACTTTGATCAAGAAGGTTCTCGCTCCTCCTACCCAGAAAACAAAGCTGATTGAGGCAGTAGAGCACGACATCGATGGGAAAACATATTACACGTTTGAGTTCATTGCTAAGGCTCCAAACTTTACTCGCCACGCTCTCAGCACAGTAGCTATCGGCAATGGCAACTTCTACACGTTGACGACAGGGGCTAACGAGAGGAGGTGGGACAAGATGAAAGACAAGTTACACACCATCGTCGATTCCTTCAAGCTTTTCAAAGTCTACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

282

Amino Acids

32.07

Weight (kDa)

9.19

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	127 - 275	8.2e-54	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55330
fragaria_vesca	FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370
malus_domestica	MD01G1121300.v1.1
prunus_persica	Prupe.2G229000_v2.0.a1 Prupe.2G229000_v2.0.a1
pyrus_communis	pycom01g14830 pycom07g18030
rosa_chinensis	RchiOBHm_Chr1g0365751
rosa_laevigata	RLG00000027403
rosa_multiflora	Rmu_sc0002093.1_g000032 Rmu_sc0004311.1_g000019
rosa_roxburghii	Rroxscaffold_4G00290930
rosa_rugosa	Rorug01G0323800
rosa_samantha	Rh1AG332600 Rh1BG293500 Rh1CG310300 Rh1DG325800
rosa_wichuraiana	Rw1G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	426, 837
AciI	CCGC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	419, 548
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	150, 565
AflIII	ACRYGT	2 cut(s)	666, 747
AgsI	TTSAA	4 cut(s)	458, 478, 823, 832
AjiI	CACGTC	1 cut(s)	27
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	622, 725, 826
AluI	AGCT	3 cut(s)	622, 725, 826
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	286, 494
ApeKI	GCWGC	2 cut(s)	308, 365
ApoI	RAATTY	2 cut(s)	419, 548
AspS9I	GGNCC	2 cut(s)	153, 555
AsuHPI	GGTGA	2 cut(s)	129, 166
AsuNHI	GCTAGC	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	153, 555
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	320, 352
BccI	CCATC	3 cut(s)	432, 644, 815
BceAI	ACGGC	1 cut(s)	478
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	286, 494
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	3 cut(s)	128, 208, 366
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	309, 366
BlsI	GCNGC	2 cut(s)	310, 367
Bme18I	GGWCC	2 cut(s)	153, 555
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	153, 555
BmiI	GGNNCC	4 cut(s)	155, 556, 557, 690
BmsI	GCATC	1 cut(s)	275
BmtI	GCTAGC	1 cut(s)	308
BoxI	GACNNNNGTC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	295
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 129, 155, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 565
Bse3DI	GCAATG	3 cut(s)	202, 678, 739
BseCI	ATCGAT	1 cut(s)	648
BseGI	GGATG	2 cut(s)	443, 487
BseLI	CCNNNNNNNGG	2 cut(s)	150, 565
BseMI	GCAATG	3 cut(s)	202, 678, 739
BseMII	CTCAG	2 cut(s)	69, 727
BseRI	GAGGAG	2 cut(s)	591, 787
BseXI	GCAGC	2 cut(s)	320, 352
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	642
BslFI	GGGAC	2 cut(s)	541, 794
BslI	CCNNNNNNNGG	2 cut(s)	150, 565
BsmAI	GTCTC	2 cut(s)	286, 494
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	541, 794
Bsp1286I	GDGCHC	2 cut(s)	334, 642
Bsp143I	GATC	1 cut(s)	582
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	70, 726
BspDI	ATCGAT	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	155, 556, 557, 690
BspMAI	CTGCAG	2 cut(s)	132, 370
BspOI	GCTAGC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	3 cut(s)	202, 678, 739
BssMI	GATC	1 cut(s)	582
BssNI	GRCGYC	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	529, 721
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	246, 306
BstDEI	CTNAG	3 cut(s)	78, 684, 713
BstF5I	GGATG	2 cut(s)	443, 487
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	2 cut(s)	286, 494
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 294, 329
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSFI	CTRYAG	3 cut(s)	128, 208, 366
BstV1I	GCAGC	2 cut(s)	320, 352
Bsu15I	ATCGAT	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	407
BsuTUI	ATCGAT	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	443, 487
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	246, 306
Cfr13I	GGNCC	2 cut(s)	153, 555
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	303
CviJI	RGCY	9 cut(s)	248, 332, 493, 572, 622, 689, 725, 764, 826
CviKI_1	RGCY	9 cut(s)	248, 332, 493, 572, 622, 689, 725, 764, 826
DdeI	CTNAG	3 cut(s)	78, 684, 713
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	153, 555
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	153, 555
EcoRI	GAATTC	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	286
FaiI	YATR	2 cut(s)	199, 661
FaqI	GGGAC	2 cut(s)	541, 794
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	2 cut(s)	426, 837
Fnu4HI	GCNGC	2 cut(s)	309, 366
FokI	GGATG	2 cut(s)	450, 494
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	309, 366
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	309, 366
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	4 cut(s)	59, 80, 514, 815
HphI	GGTGA	2 cut(s)	129, 166
Hpy166II	GTNNAC	5 cut(s)	84, 94, 427, 753, 838
Hpy188III	TCNNGA	3 cut(s)	278, 464, 586
Hpy8I	GTNNAC	5 cut(s)	84, 94, 427, 753, 838
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	5 cut(s)	181, 282, 452, 583, 829
HpyCH4III	ACNGT	2 cut(s)	529, 721
HpyCH4IV	ACGT	3 cut(s)	26, 668, 749
HpyCH4V	TGCA	3 cut(s)	130, 368, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 294, 329
HpyF3I	CTNAG	3 cut(s)	78, 684, 713
HpySE526I	ACGT	3 cut(s)	26, 668, 749
Hsp92I	GRCGYC	1 cut(s)	295
KflI	GGGWCCC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	1 cut(s)	582
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	604, 694
Lsp1109I	GCAGC	2 cut(s)	320, 352
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	3 cut(s)	26, 668, 749
MaeIII	GTNAC	5 cut(s)	180, 394, 448, 511, 798
MalI	GATC	1 cut(s)	584
MboI	GATC	1 cut(s)	582
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	334, 642
MluCI	AATT	4 cut(s)	220, 318, 419, 548
MlyI	GAGTC	2 cut(s)	89, 508
MnlI	CCTC	7 cut(s)	151, 155, 173, 612, 622, 765, 768
MseI	TTAA	1 cut(s)	844
MunI	CAATTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	245, 294, 329
NdeII	GATC	1 cut(s)	582
NheI	GCTAGC	1 cut(s)	304
NlaIV	GGNNCC	4 cut(s)	155, 556, 557, 690
NmuCI	GTSAC	2 cut(s)	394, 511
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	59, 815
PkrI	GCNGC	2 cut(s)	310, 367
PleI	GAGTC	2 cut(s)	88, 508
PpsI	GAGTC	2 cut(s)	88, 508
PpuMI	RGGWCCY	2 cut(s)	153, 555
PshAI	GACNNNNGTC	1 cut(s)	158
Psp5II	RGGWCCY	2 cut(s)	153, 555
PspN4I	GGNNCC	4 cut(s)	155, 556, 557, 690
PspPI	GGNCC	2 cut(s)	153, 555
PspPPI	RGGWCCY	2 cut(s)	153, 555
PstI	CTGCAG	2 cut(s)	132, 370
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	844
SatI	GCNGC	2 cut(s)	309, 366
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	2 cut(s)	153, 555
SchI	GAGTC	2 cut(s)	89, 508
SduI	GDGCHC	2 cut(s)	334, 642
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	3 cut(s)	128, 208, 366
SinI	GGWCC	2 cut(s)	153, 555
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	220, 318, 419, 548
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	529, 721
TaiI	ACGT	3 cut(s)	29, 671, 752
TaqI	TCGA	2 cut(s)	648, 813
TasI	AATT	4 cut(s)	220, 318, 419, 548
TfiI	GAWTC	2 cut(s)	59, 815
Tru1I	TTAA	1 cut(s)	844
Tru9I	TTAA	1 cut(s)	844
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	394, 511
TseI	GCWGC	2 cut(s)	308, 365
Tsp45I	GTSAC	2 cut(s)	394, 511
TspDTI	ATGAA	2 cut(s)	667, 803
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	153, 555
XapI	RAATTY	2 cut(s)	419, 548
XmiI	GTMKAC	2 cut(s)	426, 837
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.