pycom07g23470

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
24369183 .. 24369647
465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23470.2

Sequence Viewer

Length: 387 bp
ATGTTTCAGTTACTTCTTCGACTAAGCAATGCAAAGCTGGAGAGAGCCTGTGTCGGAAGAAGCTTAAAGTTGTTGGAAGTTGTGAAGTTCAGGAATGTTATCAGTACTGAATTTTACTCAAAGGCTTCATTACTGCCAGTCCGCCAGAAAATTCATTGGTTCTCATTCATTAATTCTATTATCATCATTGTGCTTTTGATGGGATTGCTTGCTTTGCTCATAGTACGACGCCTCAAGAATGATATGAAAAGGTTCTCAAACAGTGATGAAGAAGAAGACAAGGAGGTTAGCTGGAAATACATTCATGGTGATGTTTTCAGATATCCCCCAAACATGTCATTGTCTGGTGCTGTCGTGGGCGTGGGTACCCAACTGCTTGCCATGTAA

Protein Analysis

129

Amino Acids

14.71

Weight (kDa)

9.86

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019292)

Species Orthologous Gene IDs
malus_domestica MD07G1260100.v1.1
pyrus_communis pycom07g23470 pycom07g23790
rosa_chinensis RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii Rroxscaffold_6G00415670
rosa_samantha Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 110, 150
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 3 cut(s) 106, 225, 367
AflIII ACRYGT 1 cut(s) 333
AluBI AGCT 3 cut(s) 37, 63, 291
AluI AGCT 3 cut(s) 37, 63, 291
ApoI RAATTY 2 cut(s) 110, 150
AseI ATTAAT 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 282
BccI CCATC 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 365
BspACI CCGC 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 210, 378
BstDEI CTNAG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 210, 378
CseI GACGC 1 cut(s) 237
Csp6I GTAC 3 cut(s) 105, 224, 366
CviAII CATG 3 cut(s) 305, 334, 382
CviJI RGCY 5 cut(s) 37, 47, 63, 125, 291
CviKI_1 RGCY 5 cut(s) 37, 47, 63, 125, 291
CviQI GTAC 3 cut(s) 105, 224, 366
DdeI CTNAG 1 cut(s) 23
EciI GGCGGA 1 cut(s) 131
Eco32I GATATC 1 cut(s) 323
EcoRV GATATC 1 cut(s) 323
FaeI CATG 3 cut(s) 308, 337, 385
FaiI YATR 5 cut(s) 221, 245, 306, 335, 383
FatI CATG 3 cut(s) 304, 333, 381
GsuI CTGGAG 1 cut(s) 59
HgaI GACGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 3 cut(s) 308, 337, 385
HindIII AAGCTT 1 cut(s) 61
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 2 cut(s) 56, 320
Hpy188III TCNNGA 2 cut(s) 91, 235
Hpy99I CGWCG 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 3 cut(s) 308, 337, 385
KpnI GGTACC 1 cut(s) 369
LpnPI CCDG 7 cut(s) 23, 61, 76, 150, 158, 277, 330
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 5 cut(s) 8, 69, 281, 284, 287
MluCI AATT 3 cut(s) 110, 150, 172
MmeI TCCRAC 2 cut(s) 34, 54
MnlI CCTC 2 cut(s) 242, 277
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 65, 171
MslI CAYNNNNRTG 2 cut(s) 188, 309
MwoI GCNNNNNNNGC 1 cut(s) 214
NlaIII CATG 3 cut(s) 308, 337, 385
NlaIV GGNNCC 1 cut(s) 367
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 367
RsaI GTAC 3 cut(s) 106, 225, 367
RsaNI GTAC 3 cut(s) 105, 224, 366
RseI CAYNNNNRTG 2 cut(s) 188, 309
SaqAI TTAA 2 cut(s) 65, 171
ScaI AGTACT 1 cut(s) 106
SetI ASST 5 cut(s) 39, 65, 254, 288, 293
SmiMI CAYNNNNRTG 2 cut(s) 188, 309
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 3 cut(s) 110, 150, 172
SsiI CCGC 1 cut(s) 142
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 19
TasI AATT 3 cut(s) 110, 150, 172
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 2 cut(s) 65, 171
Tru9I TTAA 2 cut(s) 65, 171
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 6 cut(s) 117, 143, 157, 260, 282, 293
TspRI CASTG 1 cut(s) 268
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 110, 150
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.