pycom07g23790

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
24596289 .. 24596673
385 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23790.3

Sequence Viewer

Length: 258 bp
ATGGACAAGTACTCAAAGGCTTCATTACTGCCAGTCCGCCAGAAAAGTCATTGGTTCTCATTCATTAATTCTATAATCATCGTTGTGCTTTTGATGGGATTGCTTGCTTTGCTCACAGTGCGACGCCTCAAGAATGATATGAAAAAGTTCTCAAACAGTGACAAAGAAGAAGACAAGGAGGTTGGCTGGAAAGACATTCATGGTGATGTTTTCAGGTATCCCCCAAACATGTCATTGTTTTGTGCTGTCTTGGGCTAA

Protein Analysis

86

Amino Acids

9.83

Weight (kDa)

9.42

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019292)

Species Orthologous Gene IDs
malus_domestica MD07G1260100.v1.1
pyrus_communis pycom07g23470 pycom07g23790
rosa_chinensis RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii Rroxscaffold_6G00415670
rosa_samantha Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 228
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 1 cut(s) 88
BciVI GTATCC 1 cut(s) 228
BfuI GTATCC 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 118, 158
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 109, 118
BstNSI RCATGY 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 177
BsuI GTATCC 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 123, 163
Cac8I GCNNGC 1 cut(s) 105
CseI GACGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 200, 229
CviJI RGCY 3 cut(s) 20, 186, 255
CviKI_1 RGCY 3 cut(s) 20, 186, 255
CviQI GTAC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 26
FaeI CATG 2 cut(s) 203, 232
FaiI YATR 4 cut(s) 74, 140, 201, 230
FatI CATG 2 cut(s) 199, 228
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 203, 232
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 118, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 118
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 203, 232
LpnPI CCDG 4 cut(s) 45, 53, 172, 199
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 2 cut(s) 179, 182
MluCI AATT 1 cut(s) 67
MnlI CCTC 2 cut(s) 137, 172
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 83, 204
MwoI GCNNNNNNNGC 2 cut(s) 109, 118
NlaIII CATG 2 cut(s) 203, 232
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 146
PscI ACATGT 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 66
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 83, 204
SaqAI TTAA 1 cut(s) 66
ScaI AGTACT 1 cut(s) 11
SetI ASST 2 cut(s) 183, 218
SmiMI CAYNNNNRTG 2 cut(s) 83, 204
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 37
TaaI ACNGT 2 cut(s) 118, 158
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 123, 163
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 12, 52, 155, 188
TspRI CASTG 2 cut(s) 123, 163
VspI ATTAAT 1 cut(s) 66
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.