Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019292

Physical Location & Seq

Genomic Coordinates Forward (+)

37828069 .. 37829643

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGATCAGAGGCCGCACAACATTTTCATCTCTATCCCATCTTCACTCTCCCTCTGACGCCGCCGGGGTCTCATCACGAACGCCGCCTCACTCTCCCTCTGAAGCCGCCTCAGCCTCTCATCACGAAAACCCCAAGCACAGAGCAATCGAGCCAAACACCATCACATCATGACCTGAACCCACATCCTCCCCCAATTTCAGATCGGGAAGCCAGCTTTTCTTCATCCTCTCTTTACTACAGAACGCATCCTGGTGAGGAAAAGCTACTGGGTCAGCCTAACCGTAAGCATATTTCTCGTAGGTGCTCAAATGGTGATGAAGAAGAAGACAAGGAAGTTGGTTGGAAATACCTTCATGATGATGTTTTCAGACAACCTTCAAACATACCACTGTTTTGTGCCGTCTTGTTCAAGATCCAAAGACACCGATCTGGAAAACCTCAGAAAGGATGTTATTCATCATTCTTGAATTATTGCTATGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

162

Amino Acids

18.66

Weight (kDa)

8.91

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	96 - 135	1.5e-06	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019292)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260100.v1.1
pyrus_communis	pycom07g23470 pycom07g23790
rosa_chinensis	RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii	Rroxscaffold_6G00415670
rosa_samantha	Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	15, 62, 85, 107
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	381, 412, 469
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	216, 265
AluI	AGCT	2 cut(s)	216, 265
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	266, 326
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	111
BccI	CCATC	2 cut(s)	47, 169
BceAI	ACGGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	4 cut(s)	15, 62, 85, 107
BlsI	GCNGC	4 cut(s)	16, 63, 86, 108
Bme1390I	CCNGG	2 cut(s)	66, 252
BmrFI	CCNGG	2 cut(s)	66, 252
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	4 cut(s)	184, 224, 247, 455
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	125, 455
BseNI	ACTGG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	5, 202, 414, 428
BspACI	CCGC	4 cut(s)	15, 62, 85, 107
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	124, 454
BspHI	TCATGA	2 cut(s)	169, 355
BspPI	GGATC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	5, 202, 414, 428
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	284, 393
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	111, 441
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	184, 224, 247, 455
BstKTI	GATC	4 cut(s)	8, 205, 417, 431
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	5, 202, 414, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	64, 250
BstSFI	CTRYAG	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	184, 224, 247, 455
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	2 cut(s)	169, 355
CseI	GACGC	1 cut(s)	67
CviAII	CATG	2 cut(s)	170, 356
CviJI	RGCY	8 cut(s)	14, 106, 115, 153, 212, 216, 265, 277
CviKI_1	RGCY	8 cut(s)	14, 106, 115, 153, 212, 216, 265, 277
DdeI	CTNAG	2 cut(s)	111, 441
DpnI	GATC	4 cut(s)	7, 204, 416, 430
DpnII	GATC	4 cut(s)	5, 202, 414, 428
Eco31I	GGTCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	173, 359
FaiI	YATR	5 cut(s)	171, 291, 357, 386, 480
FatI	CATG	2 cut(s)	169, 355
Fnu4HI	GCNGC	4 cut(s)	15, 62, 85, 107
FokI	GGATG	4 cut(s)	171, 211, 234, 462
Fsp4HI	GCNGC	4 cut(s)	15, 62, 85, 107
GluI	GCNGC	4 cut(s)	15, 62, 85, 107
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	173, 359
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	266, 326
Hpy188I	TCNGA	6 cut(s)	10, 57, 102, 202, 371, 444
Hpy188III	TCNNGA	8 cut(s)	77, 124, 170, 206, 356, 412, 432, 466
HpyAV	CCTTC	2 cut(s)	362, 387
HpyCH4III	ACNGT	2 cut(s)	284, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	111, 441
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	173, 359
Kzo9I	GATC	4 cut(s)	5, 202, 414, 428
LpnPI	CCDG	7 cut(s)	78, 188, 226, 237, 254, 264, 417
LweI	GCATC	1 cut(s)	256
MalI	GATC	4 cut(s)	7, 204, 416, 430
MboI	GATC	4 cut(s)	5, 202, 414, 428
MboII	GAAGA	5 cut(s)	34, 213, 332, 335, 338
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	2 cut(s)	195, 469
MmeI	TCCRAC	1 cut(s)	323
MslI	CAYNNNNRTG	2 cut(s)	252, 360
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	66, 252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	5, 202, 414, 428
NlaIII	CATG	2 cut(s)	173, 359
PagI	TCATGA	2 cut(s)	169, 355
PkrI	GCNGC	4 cut(s)	16, 63, 86, 108
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	414
RseI	CAYNNNNRTG	2 cut(s)	252, 360
SatI	GCNGC	4 cut(s)	15, 62, 85, 107
Sau3AI	GATC	4 cut(s)	5, 202, 414, 428
ScrFI	CCNGG	2 cut(s)	66, 252
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	7 cut(s)	177, 218, 267, 305, 354, 379, 442
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	252, 360
Sse9I	AATT	2 cut(s)	195, 469
SsiI	CCGC	4 cut(s)	15, 62, 85, 107
StyD4I	CCNGG	2 cut(s)	64, 250
TaaI	ACNGT	2 cut(s)	284, 393
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	195, 469
TauI	GCSGC	4 cut(s)	17, 64, 87, 109
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	5 cut(s)	17, 213, 333, 344, 447
TspRI	CASTG	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.