Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019292

Physical Location & Seq

Genomic Coordinates Reverse (-)

33984580 .. 33985012

Gene Structure 433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAACTCAAGGATGTGCTCAAATGGTGATGAAGAAGAAGACAAGGAAGTTGGTTGGAAATACCTTCATGGTGATGTTTTCAGACAACCTTCAAACATACCACTGTTTTGTGCCGTCTTGTTCAAGATCCAAAGACACCGATCTGGAAAACCTCGGAAAGGATGTTATTCATCATTCTTGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

62

Amino Acids

7.22

Weight (kDa)

8.55

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	11 - 40	1.3e-07	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019292)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260100.v1.1
pyrus_communis	pycom07g23470 pycom07g23790
rosa_chinensis	RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii	Rroxscaffold_6G00415670
rosa_samantha	Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	93, 124, 181
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	38, 83
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	18, 167
BseLI	CCNNNNNNNGG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	126, 140
BspPI	GGATC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	126, 140
Bst4CI	ACNGT	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	18, 167
BstKTI	GATC	2 cut(s)	129, 143
BstMBI	GATC	2 cut(s)	126, 140
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	18, 167
BtsIMutI	CAGTG	1 cut(s)	101
CviAII	CATG	1 cut(s)	68
DpnI	GATC	2 cut(s)	128, 142
DpnII	GATC	2 cut(s)	126, 140
EcoNI	CCTNNNNNAGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 98
FatI	CATG	1 cut(s)	67
FokI	GGATG	2 cut(s)	25, 174
Hin1II	CATG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	38, 83
Hpy188I	TCNGA	2 cut(s)	83, 156
Hpy188III	TCNNGA	3 cut(s)	124, 144, 178
HpyAV	CCTTC	2 cut(s)	74, 99
HpyCH4III	ACNGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	126, 140
LpnPI	CCDG	1 cut(s)	129
MalI	GATC	2 cut(s)	128, 142
MboI	GATC	2 cut(s)	126, 140
MboII	GAAGA	3 cut(s)	44, 47, 50
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	72
NdeII	GATC	2 cut(s)	126, 140
NlaIII	CATG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	126, 140
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	3 cut(s)	66, 91, 154
SgeI	CNNG	7 cut(s)	21, 55, 80, 130, 136, 156, 165
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	105
TscAI	CASTG	1 cut(s)	108
TspDTI	ATGAA	4 cut(s)	17, 45, 56, 159
TspRI	CASTG	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.