Rh1DG035500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
5401036 .. 5401288
253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG035500.1

Sequence Viewer

Length: 253 bp
ATGAGATCAGAGGCCGCACAACATTTTCATCTCTATCCCATCTCCACTCTCCCTCTGACGCCGTCGGGCTCTCATCACAGACACCGCCTCACTCTCCCTCTGACGCCGCCTCAGCCTCTCATGACGAAAACCCCAAGCACAGAGCAATCGAGCCAAACACCATCACATCATGACCTGAACCCACATCCTCCCCCAATTTCAGATCGGGAAGCCAGCTTTTCTTCATCCTCTCTTTACTACAGAACGCATCCTG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

8.33

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019292)

Species Orthologous Gene IDs
malus_domestica MD07G1260100.v1.1
pyrus_communis pycom07g23470 pycom07g23790
rosa_chinensis RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii Rroxscaffold_6G00415670
rosa_samantha Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 15, 85, 107
AcyI GRCGYC 2 cut(s) 59, 104
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
AoxI GGCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 111
BccI CCATC 2 cut(s) 47, 169
BceAI ACGGC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 15, 107
BlsI GCNGC 2 cut(s) 16, 108
Bpu10I CCTNAGC 1 cut(s) 111
BsaHI GRCGYC 2 cut(s) 59, 104
BseGI GGATG 3 cut(s) 184, 224, 247
BseMII CTCAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 14
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 5, 202
BspACI CCGC 3 cut(s) 15, 85, 107
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 124
BspHI TCATGA 2 cut(s) 120, 169
BssMI GATC 2 cut(s) 5, 202
BssNI GRCGYC 2 cut(s) 59, 104
BstACI GRCGYC 2 cut(s) 59, 104
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 184, 224, 247
BstKTI GATC 2 cut(s) 8, 205
BstMBI GATC 2 cut(s) 5, 202
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 238
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 3 cut(s) 184, 224, 247
Cac8I GCNNGC 1 cut(s) 214
CciI TCATGA 2 cut(s) 120, 169
CseI GACGC 2 cut(s) 67, 112
CviAII CATG 2 cut(s) 121, 170
CviJI RGCY 6 cut(s) 14, 69, 115, 153, 212, 216
CviKI_1 RGCY 6 cut(s) 14, 69, 115, 153, 212, 216
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 7, 204
DpnII GATC 2 cut(s) 5, 202
Eco24I GRGCYC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 2 cut(s) 124, 173
FaiI YATR 2 cut(s) 122, 171
FatI CATG 2 cut(s) 120, 169
Fnu4HI GCNGC 2 cut(s) 15, 107
FokI GGATG 3 cut(s) 171, 211, 234
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 15, 107
GluI GCNGC 2 cut(s) 15, 107
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 2 cut(s) 67, 112
Hin1I GRCGYC 2 cut(s) 59, 104
Hin1II CATG 2 cut(s) 124, 173
Hpy188I TCNGA 4 cut(s) 10, 57, 102, 202
Hpy188III TCNNGA 3 cut(s) 121, 170, 206
Hpy99I CGWCG 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 59, 104
Hsp92II CATG 2 cut(s) 124, 173
Kzo9I GATC 2 cut(s) 5, 202
LpnPI CCDG 2 cut(s) 188, 226
MalI GATC 2 cut(s) 7, 204
MboI GATC 2 cut(s) 5, 202
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 195
MnlI CCTC 8 cut(s) 4, 63, 98, 108, 120, 126, 198, 238
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 2 cut(s) 5, 202
NlaIII CATG 2 cut(s) 124, 173
PagI TCATGA 2 cut(s) 120, 169
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 16, 108
PsyI GACNNNGTC 1 cut(s) 61
SatI GCNGC 2 cut(s) 15, 107
Sau3AI GATC 2 cut(s) 5, 202
SduI GDGCHC 1 cut(s) 71
SetI ASST 2 cut(s) 177, 218
SfcI CTRYAG 1 cut(s) 238
SgeI CNNG 8 cut(s) 78, 133, 147, 162, 182, 187, 218, 225
Sse9I AATT 1 cut(s) 195
SsiI CCGC 3 cut(s) 15, 85, 107
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 17, 109
TspDTI ATGAA 2 cut(s) 17, 213
Tth111I GACNNNGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.