Rh5AG393000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019292
Physical Location & Seq
Reverse (-)
68131778 .. 68133792
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG393000.1

Sequence Viewer

Length: 348 bp
ATGTTTCAAAATGACAGATTCTATCCTCCCTTGGGAGAGGCAATTACGAATTGCCATCAAGCCTTCGAGATGAGATCAGAGGCCGCACAGCATTTTCATCTCTATCCCGTCTCCACTCTCCCTCTGACGCCGCCGGGCTCTCATCACAGACGCCGCCTCACTCTCCCTCTGACGCCGCCTCAGCCTCTCATCACGAAAACCCCAAGCACAGAGCAATCGAGCCAAACACCATCACATCATGACCTGAACCCACATCCTCCCCCAATTTCAGATCAGGAAGCCAGCTTTTCTTCATCCTCTCTTTACTATAGAACGCATCCTGGTTTCCCAGCACAGGAAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

6.48

Isoelectric Point (pI)

69.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019292)

Species Orthologous Gene IDs
malus_domestica MD07G1260100.v1.1
pyrus_communis pycom07g23470 pycom07g23790
rosa_chinensis RchiOBHm_Chr5g0063431 RchiOBHm_Chr6g0273231
rosa_roxburghii Rroxscaffold_6G00415670
rosa_samantha Rh1DG035500 Rh5AG393000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 131, 154, 176
AcyI GRCGYC 3 cut(s) 128, 151, 173
AfiI CCNNNNNNNGG 2 cut(s) 32, 334
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 3 cut(s) 285, 341, 345
AluI AGCT 3 cut(s) 285, 341, 345
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 135
AsuNHI GCTAGC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 63, 238
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 342, 346
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 4 cut(s) 84, 131, 154, 176
BlsI GCNGC 4 cut(s) 85, 132, 155, 177
Bme1390I CCNGG 2 cut(s) 135, 321
BmrFI CCNGG 2 cut(s) 135, 321
BmsI GCATC 1 cut(s) 325
BmtI GCTAGC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 3 cut(s) 128, 151, 173
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 334
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 3 cut(s) 253, 293, 316
BseLI CCNNNNNNNGG 2 cut(s) 32, 334
BseMII CTCAG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 32, 334
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 74, 271
BspACI CCGC 4 cut(s) 84, 131, 154, 176
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 74, 271
BssNI GRCGYC 3 cut(s) 128, 151, 173
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 321
BstACI GRCGYC 3 cut(s) 128, 151, 173
BstC8I GCNNGC 2 cut(s) 283, 343
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 253, 293, 316
BstKTI GATC 2 cut(s) 77, 274
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 74, 271
BstMWI GCNNNNNNNGC 2 cut(s) 181, 338
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 133, 319
BstSFI CTRYAG 1 cut(s) 307
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 253, 293, 316
Cac8I GCNNGC 2 cut(s) 283, 343
CciI TCATGA 1 cut(s) 238
CseI GACGC 3 cut(s) 136, 159, 181
CviAII CATG 1 cut(s) 239
CviJI RGCY 9 cut(s) 62, 83, 138, 184, 222, 281, 285, 341, 345
CviKI_1 RGCY 9 cut(s) 62, 83, 138, 184, 222, 281, 285, 341, 345
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 76, 273
DpnII GATC 2 cut(s) 74, 271
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 240, 309
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 84, 131, 154, 176
FokI GGATG 3 cut(s) 240, 280, 303
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 4 cut(s) 84, 131, 154, 176
FspBI CTAG 2 cut(s) 342, 346
GluI GCNGC 4 cut(s) 84, 131, 154, 176
GsaI CCCAGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 134
HgaI GACGC 3 cut(s) 136, 159, 181
Hin1I GRCGYC 3 cut(s) 128, 151, 173
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 4 cut(s) 79, 126, 171, 271
Hpy188III TCNNGA 4 cut(s) 67, 193, 239, 275
HpyAV CCTTC 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 338
HpyF3I CTNAG 1 cut(s) 180
Hsp92I GRCGYC 3 cut(s) 128, 151, 173
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 2 cut(s) 74, 271
LpnPI CCDG 8 cut(s) 147, 257, 260, 295, 306, 320, 333, 342
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 342, 346
MalI GATC 2 cut(s) 76, 273
MboI GATC 2 cut(s) 74, 271
MboII GAAGA 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 42, 49, 264
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 135, 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 181, 338
NciI CCSGG 1 cut(s) 135
NdeII GATC 2 cut(s) 74, 271
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 242
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 85, 132, 155, 177
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 319
SatI GCNGC 4 cut(s) 84, 131, 154, 176
Sau3AI GATC 2 cut(s) 74, 271
ScrFI CCNGG 2 cut(s) 135, 321
SduI GDGCHC 1 cut(s) 140
SetI ASST 4 cut(s) 246, 287, 343, 347
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 307
Sse9I AATT 3 cut(s) 42, 49, 264
SsiI CCGC 4 cut(s) 84, 131, 154, 176
SspMI CTAG 2 cut(s) 342, 346
StyD4I CCNGG 2 cut(s) 133, 319
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 2 cut(s) 66, 218
TasI AATT 3 cut(s) 42, 49, 264
TauI GCSGC 4 cut(s) 86, 133, 156, 178
TfiI GAWTC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 86, 282
XspI CTAG 2 cut(s) 342, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.