Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007167

Physical Location & Seq

Genomic Coordinates Forward (+)

25252900 .. 25254349

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTGTCGCTGGTGCCGGACGACGTCGGAAAGGCGACGGTGAAGCTGGGGAAAGCGGCGGTTCAGGACGGCACCTGCATTTGGGAGAATCCAGTTTTTGAGTCAGTGAAGCTCGTTGAGGAAGTAAAAACAGGAAAACTGAAAGAGAAGATTTATCACTTCATTGTTTCAAATGGATCTTCGAAATCAGGTTATCTCGGAGAAGCTTCAATTGATTTTGCAGATATTGTGGCGGAAACTGAACCGTTAAGCATCACACTGCCCCTTAAATTTGCAAACTCTGGTGTGGTTTTACATGTGACAATTGACAGGATTCGGGAAGATGGTGATCAAAGGGAAATCGAAGAGAGTGACGATCCAAGTCTTTCGCACCATAGCAGCGTAGATGGAAGCAACCACCAAAGTTTCAACGAAACGAATAAAGGATATGCCCATCGTGACGCTGGCAGTTCCCTGTCACCCCCTGAAGTACCAACTTCTATGCCTCAAAATGGACATGCGGGTGCCAACGGAAGGAAAACCCATGTGCGTCAAAAATCAAGCTTGGATTGGTCTTCAGATGAAAGCTTATTTGACTCGCCAGACATTGTTGAAGACAAGCTTCCGACAGGAGTGCAAGCCGTTTCAGATGTTGATAAACTCAGAAATGAAATGACTGCTCTGAAGAGGCAGGCAGACCTTTCGGAACTGGAATTGCAGTCTCTTCGGAAACAGATGGCCAAAGAGAGCAATCAAGGACAGAATCTGTCTAGACAGATTGTTTGCCTTAAAGAGGAGAGAGATGCGCTCAAAATGGAATGTGAACAACTTAAGTCCTCGCAGGGACGTGGTAATGGGAAACGGACTTTCAAAACGTTGCAGCCCGAGACTGAGGATACAAGAGCGCAGTTAGAAGCAATGAAGCAAGAGCTTAGTTCTGAAAAGAAAGCAAGAACCAATCTTCGCTCACAGCTCGCGCAGACACAAGACTCAAATTCTGAGTTAGTCCTTGTCGTGAAGGATCGATCGAAGATGCATTGGGAAAGAAAAATAGAGAGATATCTGATCTTTCAAGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

354

Amino Acids

39.32

Weight (kDa)

5.71

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52280
fragaria_vesca	FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461
malus_domestica	MD01G1200700.v1.1 MD07G1268600.v1.1
prunus_persica	Prupe.2G294200_v2.0.a1 Prupe.2G294200_v2.0.a1
pyrus_communis	pycom01g21050 pycom07g24610 pycom07g24620
rosa_chinensis	RchiOBHm_Chr1g0377241
rosa_laevigata	RLG00000026532
rosa_multiflora	Rmu_sc0009231.1_g000002 Rmu_sc0010600.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281350
rosa_rugosa	Rorug01G0402600 Rorug01G0402600
rosa_samantha	Rh1AG419800 Rh1BG378800 Rh1CG392800 Rh1DG409400
rosa_wichuraiana	Rw1G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	3 cut(s)	13, 71, 503
AccII	CGCG	1 cut(s)	956
AciI	CCGC	4 cut(s)	56, 59, 233, 500
AclI	AACGTT	1 cut(s)	854
AclWI	GGATC	3 cut(s)	184, 350, 1008
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	269, 973
AcuI	CTGAAG	3 cut(s)	486, 540, 683
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	4 cut(s)	81, 491, 513, 772
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	171, 210, 409, 593, 850, 1052
AjiI	CACGTC	1 cut(s)	827
AluBI	AGCT	8 cut(s)	46, 112, 206, 543, 567, 601, 910, 952
AluI	AGCT	8 cut(s)	46, 112, 206, 543, 567, 601, 910, 952
Alw26I	GTCTC	2 cut(s)	705, 860
AlwI	GGATC	3 cut(s)	184, 350, 1008
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	378, 859
ApoI	RAATTY	2 cut(s)	269, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	744, 776
AspLEI	GCGC	3 cut(s)	787, 886, 958
AsuHPI	GGTGA	3 cut(s)	52, 338, 450
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	719
BanI	GGYRCC	3 cut(s)	13, 71, 503
BbsI	GAAGAC	2 cut(s)	546, 600
BbvI	GCAGC	2 cut(s)	390, 871
BccI	CCATC	4 cut(s)	317, 380, 441, 709
BceAI	ACGGC	2 cut(s)	85, 605
BcgI	CGANNNNNNTGC	6 cut(s)	595, 629, 663, 686, 697, 720
BciVI	GTATCC	1 cut(s)	868
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	705, 860
BfaI	CTAG	1 cut(s)	750
BfrI	CTTAAG	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	868
BisI	GCNGC	3 cut(s)	57, 379, 860
BlsI	GCNGC	3 cut(s)	58, 380, 861
BmeT110I	CYCGRG	1 cut(s)	863
BmgBI	CACGTC	1 cut(s)	827
BmiI	GGNNCC	3 cut(s)	15, 73, 505
BmsI	GCATC	3 cut(s)	261, 772, 1002
BpiI	GAAGAC	2 cut(s)	546, 600
BplI	GAGNNNNNCTC	2 cut(s)	771, 803
Bpu14I	TTCGAA	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	1003
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 491, 513, 772
Bse1I	ACTGG	2 cut(s)	92, 693
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	1003
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	81, 491, 513, 772
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	655, 861, 969
BseNI	ACTGG	2 cut(s)	92, 693
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	2 cut(s)	390, 871
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	956
Bsh1285I	CGRYCG	1 cut(s)	1007
BshFI	GGCC	1 cut(s)	719
BshNI	GGYRCC	3 cut(s)	13, 71, 503
BshVI	ATCGAT	1 cut(s)	1003
BsiEI	CGRYCG	1 cut(s)	1007
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	4 cut(s)	81, 491, 513, 772
BsmAI	GTCTC	2 cut(s)	705, 860
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
BspACI	CCGC	4 cut(s)	56, 59, 233, 500
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	3 cut(s)	654, 862, 970
BspDI	ATCGAT	1 cut(s)	1003
BspFNI	CGCG	1 cut(s)	956
BspLI	GGNNCC	3 cut(s)	15, 73, 505
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	184, 350, 1008
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	3 cut(s)	13, 71, 503
BspTI	CTTAAG	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	2 cut(s)	92, 693
BssMI	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	40, 246
Bst6I	CTCTTC	3 cut(s)	339, 659, 708
BstACI	GRCGYC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	445, 618, 672, 954
BstDEI	CTNAG	4 cut(s)	641, 870, 911, 978
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstFNI	CGCG	1 cut(s)	956
BstHHI	GCGC	3 cut(s)	787, 886, 958
BstKTI	GATC	6 cut(s)	179, 331, 358, 1003, 1007, 1047
BstMAI	GTCTC	2 cut(s)	705, 860
BstMBI	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
BstMCI	CGRYCG	1 cut(s)	1007
BstNSI	RCATGY	2 cut(s)	299, 500
BstUI	CGCG	1 cut(s)	956
BstV1I	GCAGC	2 cut(s)	390, 871
BstV2I	GAAGAC	2 cut(s)	546, 600
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
Bsu15I	ATCGAT	1 cut(s)	1003
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	1 cut(s)	719
BsuTUI	ATCGAT	1 cut(s)	1003
BtrI	CACGTC	1 cut(s)	827
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	111, 257
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	4 cut(s)	445, 618, 672, 954
CaiI	CAGNNNCTG	1 cut(s)	745
CfoI	GCGC	3 cut(s)	787, 886, 958
ClaI	ATCGAT	1 cut(s)	1003
CseI	GACGC	2 cut(s)	449, 518
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	3 cut(s)	296, 497, 524
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	641, 870, 911, 978
DpnI	GATC	6 cut(s)	178, 330, 357, 1002, 1006, 1046
DpnII	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	3 cut(s)	339, 659, 708
EarI	CTCTTC	3 cut(s)	339, 659, 708
EciI	GGCGGA	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	1040
Eco57I	CTGAAG	3 cut(s)	486, 540, 683
Eco88I	CYCGRG	1 cut(s)	863
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	1040
EcoT22I	ATGCAT	1 cut(s)	1017
FaeI	CATG	3 cut(s)	299, 500, 527
FaiI	YATR	6 cut(s)	297, 375, 429, 482, 498, 525
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	3 cut(s)	295, 496, 523
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	57, 379, 860
Fsp4HI	GCNGC	3 cut(s)	57, 379, 860
FspBI	CTAG	1 cut(s)	750
GlaI	GCGC	3 cut(s)	786, 885, 957
GluI	GCNGC	3 cut(s)	57, 379, 860
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	2 cut(s)	449, 518
HhaI	GCGC	3 cut(s)	787, 886, 958
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	299, 500, 527
Hin6I	GCGC	3 cut(s)	785, 884, 956
HinP1I	GCGC	3 cut(s)	785, 884, 956
HindIII	AAGCTT	4 cut(s)	204, 541, 565, 599
HinfI	GANTC	6 cut(s)	88, 101, 313, 575, 742, 968
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	52, 338, 450
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188III	TCNNGA	5 cut(s)	65, 317, 437, 750, 994
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	3 cut(s)	26, 29, 40
HpyAV	CCTTC	2 cut(s)	507, 991
HpyCH4III	ACNGT	2 cut(s)	40, 246
HpyCH4IV	ACGT	3 cut(s)	24, 826, 854
HpyCH4V	TGCA	7 cut(s)	78, 221, 275, 616, 697, 859, 1015
HpyF3I	CTNAG	4 cut(s)	641, 870, 911, 978
HpySE526I	ACGT	3 cut(s)	24, 826, 854
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	299, 500, 527
HspAI	GCGC	3 cut(s)	785, 884, 956
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
Lsp1109I	GCAGC	2 cut(s)	390, 871
LweI	GCATC	3 cut(s)	261, 772, 1002
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	3 cut(s)	24, 826, 854
MaeIII	GTNAC	4 cut(s)	298, 350, 437, 456
MalI	GATC	6 cut(s)	178, 330, 357, 1002, 1006, 1046
MboI	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
MfeI	CAATTG	2 cut(s)	210, 303
MflI	RGATCY	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	5 cut(s)	210, 269, 303, 692, 973
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	3 cut(s)	110, 569, 962
MmeI	TCCRAC	2 cut(s)	7, 629
MnlI	CCTC	6 cut(s)	112, 495, 660, 766, 826, 865
Mox20I	TGGCCA	1 cut(s)	719
Mph1103I	ATGCAT	1 cut(s)	1017
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	4 cut(s)	248, 267, 768, 810
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	2 cut(s)	210, 303
MvnI	CGCG	1 cut(s)	956
NdeII	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
NlaIII	CATG	3 cut(s)	299, 500, 527
NlaIV	GGNNCC	3 cut(s)	15, 73, 505
NmuCI	GTSAC	4 cut(s)	298, 350, 437, 456
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	2 cut(s)	299, 500
NspV	TTCGAA	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	83
PciI	ACATGT	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	88, 313, 742
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	58, 380, 861
Ple19I	CGATCG	1 cut(s)	1007
PleI	GAGTC	3 cut(s)	109, 569, 962
PpsI	GAGTC	3 cut(s)	109, 569, 962
PscI	ACATGT	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	46
PspN4I	GGNNCC	3 cut(s)	15, 73, 505
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	1007
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	248, 267, 768, 810
SatI	GCNGC	3 cut(s)	57, 379, 860
Sau3AI	GATC	6 cut(s)	176, 328, 355, 1000, 1004, 1044
SchI	GAGTC	3 cut(s)	110, 569, 962
SfaNI	GCATC	3 cut(s)	261, 772, 1002
SfuI	TTCGAA	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	5 cut(s)	210, 269, 303, 692, 973
SsiI	CCGC	4 cut(s)	56, 59, 233, 500
SspMI	CTAG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	40, 246
TaiI	ACGT	3 cut(s)	27, 829, 857
TaqI	TCGA	4 cut(s)	182, 342, 1003, 1007
TasI	AATT	5 cut(s)	210, 269, 303, 692, 973
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	88, 313, 742
Tru1I	TTAA	4 cut(s)	248, 267, 768, 810
Tru9I	TTAA	4 cut(s)	248, 267, 768, 810
TscAI	CASTG	2 cut(s)	111, 264
TseFI	GTSAC	4 cut(s)	298, 350, 437, 456
TseI	GCWGC	2 cut(s)	378, 859
Tsp45I	GTSAC	4 cut(s)	298, 350, 437, 456
TspDTI	ATGAA	4 cut(s)	151, 576, 663, 914
TspGWI	ACGGA	2 cut(s)	525, 856
TspRI	CASTG	2 cut(s)	111, 264
Tth111I	GACNNNGTC	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	809
XagI	CCTNNNNNAGG	1 cut(s)	770
XapI	RAATTY	2 cut(s)	269, 973
XbaI	TCTAGA	1 cut(s)	749
XceI	RCATGY	2 cut(s)	299, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	750
ZraI	GACGTC	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.