Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009231.1

Orthogroup ID

OG0007167

Physical Location & Seq

Genomic Coordinates Reverse (-)

3531 .. 5632

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009231.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

atgctgatgaggcaggcggacatatcagaattggaattacagtctctccgaaagcaagtgtcaaaagagagcagccaaggacaaaatctgtcaagacagattattagccttaaagaggagagagacgcactcaaattagaatgtcaacaactaaagtcatcgcggggacgtggggaggaggtacatgcttcccaaaaattgcagcccgcggacaaagatacaagagtgcagttagaaacaatgaagcaagagcttaatcgtgaaaagaaagtaagaaccaatcttcactcgcaactgcagacaacacaagactcaaattctgagttaatccttgtggtgaaggatcttgaagattcgttgatgaagaaagatagggaaatatctgatctttcaagcaagttagaaactgaaaagaattccaaattaatggggaaattttccgtgcacaaaacagatgaggatgaagcagagtcgttgaagcagaagatccgagaacttttgagtgaaatggacacccacgagaaggagagggaagaacaagatatgcatataaaacggctcaccttggactatgaccttttgaagaagaagaactgtgacatctctctgaagttggatcgaaaccaagaaaagctacgaacagagatggaaaatgaacgtgcaggttatattgcaaccataaaagagcttgaatctcaagtaaagagatcagaagaaacaattgagaagcaagctcatgaatttgcagagtgtttgatctccattcaggaactggaaaatgaggtcaagtgtttggagatggaactggagaagcaggccaagggatttgaagataaactgcaggatctggcatatgccaaagatgagcaagaacagagagctactgaagcagaagaagcattgagaaagacaagggaaaatagtgctgctacagctgagcgtcttcaagatgaattaagaaagctttctgtggaaatggcatctaaggttaatgagaatgagaagcagagcactaaagcactggcagaagctaatgaactgcgtgtgcagaacagaattctggaagagaagctccagaaatccaatgaacagttagaactgatcaagggccagattgatgtgaaagcaaagcatgtagagcagatctccttggaactagaaaacaaatcgaagcagcttgaatatgcagaactgcataaggaagaaaagcatgaagctctcacaatgaaaatccaaatgctcaaagctgagatagaaaggctcacagaagagaactctaacatcacaaaacaggaggaagataaattgagaggagatttggaacaaatgaagaaactaattgctgaaaatgaggtgcacatccagaatttgaatgttgaaaagcatgatttggagaaaagatttgcttcatcaaagcaggaatcagtgaaaacgcatgaacaacttactaacatgaggtccatgaaagatgagaaggaggcgacaatcactcgtctcaagtcagaagtggacaagttgaagacccaatgcaatgagtctaagaacaccttgcgtaaggaagcattggaaaaggaaaatttgagtaagcaaatacttcaattacaggctgggttaaggaaagaaggaaaaaacagcactacagataagaagctcaagaaatacaatggacaagctgctgtttctagtaataaccaaaggaaatctgaagattccttggagagagagtgtaattataaggacttgctgaccgagttgacattgctaaaagaaagaaacacatccatggaaaaagaactgaaggagatggaagagagatattcagaggtaagtctcagatttgcagaggttgaaggtgaaaggcaacaacttgtcatgactgtgcgtaacctcagaagcaataagacgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

636

Amino Acids

74.27

Weight (kDa)

5.7

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52280
fragaria_vesca	FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461
malus_domestica	MD01G1200700.v1.1 MD07G1268600.v1.1
prunus_persica	Prupe.2G294200_v2.0.a1 Prupe.2G294200_v2.0.a1
pyrus_communis	pycom01g21050 pycom07g24610 pycom07g24620
rosa_chinensis	RchiOBHm_Chr1g0377241
rosa_laevigata	RLG00000026532
rosa_multiflora	Rmu_sc0009231.1_g000002 Rmu_sc0010600.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281350
rosa_rugosa	Rorug01G0402600 Rorug01G0402600
rosa_samantha	Rh1AG419800 Rh1BG378800 Rh1CG392800 Rh1DG409400
rosa_wichuraiana	Rw1G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1734
Acc36I	ACCTGC	1 cut(s)	653
AccII	CGCG	2 cut(s)	163, 209
AciI	CCGC	4 cut(s)	17, 163, 207, 209
AclWI	GGATC	4 cut(s)	351, 481, 624, 852
AcsI	RAATTY	7 cut(s)	316, 415, 434, 740, 1056, 1366, 1576
AcuI	CTGAAG	4 cut(s)	629, 906, 1725, 1817
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	115, 523
AjiI	CACGTC	1 cut(s)	170
Alw21I	GWGCWC	3 cut(s)	447, 1013, 1359
Alw26I	GTCTC	4 cut(s)	48, 117, 1499, 1835
Alw44I	GTGCAC	2 cut(s)	443, 1355
AlwI	GGATC	4 cut(s)	351, 481, 624, 852
AlwNI	CAGNNNCTG	2 cut(s)	772, 847
AoxI	GGCC	2 cut(s)	816, 1108
ApaLI	GTGCAC	2 cut(s)	443, 1355
ApeKI	GCWGC	5 cut(s)	72, 202, 926, 1174, 1673
ApoI	RAATTY	7 cut(s)	316, 415, 434, 740, 1056, 1366, 1576
AseI	ATTAAT	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	1108, 1458
AsuHPI	GGTGA	3 cut(s)	349, 553, 1865
AvaII	GGWCC	1 cut(s)	1458
BaeGI	GKGCMC	2 cut(s)	447, 1359
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	2 cut(s)	935, 1526
Bbv12I	GWGCWC	3 cut(s)	447, 1013, 1359
BbvI	GCAGC	5 cut(s)	84, 214, 913, 1186, 1660
BccI	CCATC	3 cut(s)	640, 793, 1798
BceAI	ACGGC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	1101
BcoDI	GTCTC	4 cut(s)	48, 117, 1499, 1835
BfaI	CTAG	3 cut(s)	1157, 1683, 1909
BfmI	CTRYAG	4 cut(s)	296, 839, 930, 1638
BfuAI	ACCTGC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	1143
BisI	GCNGC	5 cut(s)	73, 203, 927, 1175, 1674
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	5 cut(s)	74, 204, 928, 1176, 1675
Bme18I	GGWCC	1 cut(s)	1458
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	1108, 1458
BmsI	GCATC	1 cut(s)	989
BpiI	GAAGAC	2 cut(s)	935, 1526
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 1130, 1162
BpmI	CTGGAG	2 cut(s)	827, 1058
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	3 cut(s)	681, 1481, 1637
BsaJI	CCNNGG	7 cut(s)	76, 207, 564, 819, 1149, 1713, 1782
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 1709, 1739
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 523
Bse1I	ACTGG	3 cut(s)	777, 810, 1026
Bse3DI	GCAATG	2 cut(s)	1537, 1757
BseDI	CCNNGG	7 cut(s)	76, 207, 564, 819, 1149, 1713, 1782
BseGI	GGATG	3 cut(s)	466, 1359, 1778
BseLI	CCNNNNNNNGG	2 cut(s)	115, 523
BseMI	GCAATG	2 cut(s)	1537, 1757
BseMII	CTCAG	5 cut(s)	312, 927, 1239, 1846, 1903
BseNI	ACTGG	3 cut(s)	777, 810, 1026
BseRI	GAGGAG	3 cut(s)	131, 191, 1326
BseSI	GKGCMC	2 cut(s)	447, 1359
BseXI	GCAGC	5 cut(s)	84, 214, 913, 1186, 1660
BseYI	CCCAGC	1 cut(s)	1607
BsgI	GTGCAG	3 cut(s)	248, 681, 1067
Bsh1236I	CGCG	2 cut(s)	163, 209
BshFI	GGCC	2 cut(s)	818, 1110
BsiHKAI	GWGCWC	3 cut(s)	447, 1013, 1359
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	115, 523
BsmAI	GTCTC	4 cut(s)	48, 117, 1499, 1835
BsmBI	CGTCTC	2 cut(s)	117, 1499
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	818, 1110
Bsp1286I	GDGCHC	3 cut(s)	447, 1013, 1359
Bsp143I	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	1782
BspACI	CCGC	4 cut(s)	17, 163, 207, 209
BspANI	GGCC	2 cut(s)	818, 1110
BspCNI	CTCAG	5 cut(s)	313, 928, 1240, 1845, 1902
BspFNI	CGCG	2 cut(s)	163, 209
BspHI	TCATGA	2 cut(s)	736, 1872
BspMAI	CTGCAG	2 cut(s)	300, 843
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	4 cut(s)	351, 481, 624, 852
BsrDI	GCAATG	2 cut(s)	1537, 1757
BsrI	ACTGG	3 cut(s)	777, 810, 1026
BssECI	CCNNGG	7 cut(s)	76, 207, 564, 819, 1149, 1713, 1782
BssMI	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	6 cut(s)	76, 564, 819, 1149, 1713, 1782
Bst2BI	CACGAG	1 cut(s)	518
Bst4CI	ACNGT	4 cut(s)	42, 596, 1092, 1879
Bst6I	CTCTTC	3 cut(s)	1059, 1263, 1803
BstC8I	GCNNGC	4 cut(s)	15, 207, 732, 816
BstDEI	CTNAG	7 cut(s)	321, 936, 984, 1248, 1539, 1832, 1889
BstDSI	CCRYGG	2 cut(s)	207, 1782
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	466, 1359, 1778
BstFNI	CGCG	2 cut(s)	163, 209
BstKTI	GATC	9 cut(s)	346, 388, 489, 619, 710, 759, 847, 1104, 1146
BstMAI	GTCTC	4 cut(s)	48, 117, 1499, 1835
BstMBI	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 887, 896, 932, 1138
BstNSI	RCATGY	2 cut(s)	188, 1136
BstSFI	CTRYAG	4 cut(s)	296, 839, 930, 1638
BstSLI	GKGCMC	2 cut(s)	447, 1359
BstUI	CGCG	2 cut(s)	163, 209
BstV1I	GCAGC	5 cut(s)	84, 214, 913, 1186, 1660
BstV2I	GAAGAC	2 cut(s)	935, 1526
BstX2I	RGATCY	4 cut(s)	343, 486, 844, 1143
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	4 cut(s)	343, 486, 844, 1143
BsuRI	GGCC	2 cut(s)	818, 1110
BtgI	CCRYGG	2 cut(s)	207, 1782
BtgZI	GCGATG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	466, 1359, 1778
BtsIMutI	CAGTG	2 cut(s)	1019, 1431
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	4 cut(s)	15, 207, 732, 816
CaiI	CAGNNNCTG	2 cut(s)	772, 847
CciI	TCATGA	2 cut(s)	736, 1872
Cfr13I	GGNCC	2 cut(s)	1108, 1458
Cfr42I	CCGCGG	1 cut(s)	210
CseI	GACGC	2 cut(s)	134, 929
Csp6I	GTAC	1 cut(s)	182
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	7 cut(s)	321, 936, 984, 1248, 1539, 1832, 1889
DpnI	GATC	9 cut(s)	345, 387, 488, 618, 709, 758, 846, 1103, 1145
DpnII	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
Eam1104I	CTCTTC	3 cut(s)	1059, 1263, 1803
EarI	CTCTTC	3 cut(s)	1059, 1263, 1803
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	6 cut(s)	76, 564, 819, 1149, 1713, 1782
Eco47I	GGWCC	1 cut(s)	1458
Eco57I	CTGAAG	4 cut(s)	629, 906, 1725, 1817
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	415, 1056
EcoT14I	CCWWGG	6 cut(s)	76, 564, 819, 1149, 1713, 1782
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	6 cut(s)	76, 564, 819, 1149, 1713, 1782
Esp3I	CGTCTC	2 cut(s)	117, 1499
FalI	AAGNNNNNCTT	4 cut(s)	1390, 1422, 1532, 1564
FaqI	GGGAC	1 cut(s)	180
FauI	CCCGC	2 cut(s)	156, 214
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	1101
Fnu4HI	GCNGC	5 cut(s)	73, 203, 927, 1175, 1674
FokI	GGATG	3 cut(s)	473, 1346, 1765
Fsp4HI	GCNGC	5 cut(s)	73, 203, 927, 1175, 1674
FspBI	CTAG	3 cut(s)	1157, 1683, 1909
GluI	GCNGC	5 cut(s)	73, 203, 927, 1175, 1674
GsaI	CCCAGC	1 cut(s)	1611
GsuI	CTGGAG	2 cut(s)	827, 1058
HaeIII	GGCC	2 cut(s)	818, 1110
HgaI	GACGC	2 cut(s)	134, 929
HincII	GTYRAC	2 cut(s)	146, 1755
HindII	GTYRAC	2 cut(s)	146, 1755
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	7 cut(s)	311, 353, 470, 692, 1421, 1535, 1709
HphI	GGTGA	3 cut(s)	349, 553, 1865
Hpy166II	GTNNAC	5 cut(s)	146, 445, 1357, 1510, 1755
Hpy8I	GTNNAC	5 cut(s)	146, 445, 1357, 1510, 1755
HpyAV	CCTTC	6 cut(s)	334, 517, 1468, 1616, 1792, 1844
HpyCH4III	ACNGT	4 cut(s)	42, 596, 1092, 1879
HpyCH4IV	ACGT	2 cut(s)	169, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 887, 896, 932, 1138
HpyF3I	CTNAG	7 cut(s)	321, 936, 984, 1248, 1539, 1832, 1889
HpySE526I	ACGT	2 cut(s)	169, 658
Ksp22I	TGATCA	1 cut(s)	1101
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
LmnI	GCTCC	1 cut(s)	1077
Lsp1109I	GCAGC	5 cut(s)	84, 214, 913, 1186, 1660
LweI	GCATC	1 cut(s)	989
MaeI	CTAG	3 cut(s)	1157, 1683, 1909
MaeII	ACGT	2 cut(s)	169, 658
MaeIII	GTNAC	2 cut(s)	596, 1883
MalI	GATC	9 cut(s)	345, 387, 488, 618, 709, 758, 846, 1103, 1145
MboI	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	4 cut(s)	343, 486, 844, 1143
MhlI	GDGCHC	3 cut(s)	447, 1013, 1359
MlyI	GAGTC	3 cut(s)	305, 479, 1544
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	964
MseI	TTAA	7 cut(s)	111, 255, 326, 425, 956, 990, 1613
MslI	CAYNNNNRTG	2 cut(s)	1781, 1877
MspA1I	CMGCKG	2 cut(s)	209, 935
MunI	CAATTG	1 cut(s)	720
MvnI	CGCG	2 cut(s)	163, 209
MwoI	GCNNNNNNNGC	5 cut(s)	10, 887, 896, 932, 1138
NcoI	CCATGG	1 cut(s)	1782
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	2 cut(s)	188, 1136
PagI	TCATGA	2 cut(s)	736, 1872
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	4 cut(s)	353, 692, 1421, 1709
PkrI	GCNGC	5 cut(s)	74, 204, 928, 1176, 1675
PleI	GAGTC	3 cut(s)	305, 478, 1543
PpsI	GAGTC	3 cut(s)	305, 478, 1543
PshBI	ATTAAT	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	1734
PspFI	CCCAGC	1 cut(s)	1607
PspPI	GGNCC	2 cut(s)	1108, 1458
PstI	CTGCAG	2 cut(s)	300, 843
PstNI	CAGNNNCTG	2 cut(s)	772, 847
PsuI	RGATCY	4 cut(s)	343, 486, 844, 1143
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	2 cut(s)	1781, 1877
SacII	CCGCGG	1 cut(s)	210
SaqAI	TTAA	7 cut(s)	111, 255, 326, 425, 956, 990, 1613
SatI	GCNGC	5 cut(s)	73, 203, 927, 1175, 1674
Sau3AI	GATC	9 cut(s)	343, 385, 486, 616, 707, 756, 844, 1101, 1143
Sau96I	GGNCC	2 cut(s)	1108, 1458
SchI	GAGTC	3 cut(s)	305, 479, 1544
SduI	GDGCHC	3 cut(s)	447, 1013, 1359
SfaNI	GCATC	1 cut(s)	989
SfcI	CTRYAG	4 cut(s)	296, 839, 930, 1638
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	1458
SmiMI	CAYNNNNRTG	2 cut(s)	1781, 1877
SmlI	CTYRAG	3 cut(s)	696, 1496, 1652
SmoI	CTYRAG	3 cut(s)	696, 1496, 1652
SsiI	CCGC	4 cut(s)	17, 163, 207, 209
SspMI	CTAG	3 cut(s)	1157, 1683, 1909
StyI	CCWWGG	6 cut(s)	76, 564, 819, 1149, 1713, 1782
TaaI	ACNGT	4 cut(s)	42, 596, 1092, 1879
TaiI	ACGT	2 cut(s)	172, 661
TaqI	TCGA	2 cut(s)	619, 1169
TaqII	GACCGA	1 cut(s)	1763
TfiI	GAWTC	4 cut(s)	353, 692, 1421, 1709
Tru1I	TTAA	7 cut(s)	111, 255, 326, 425, 956, 990, 1613
Tru9I	TTAA	7 cut(s)	111, 255, 326, 425, 956, 990, 1613
TscAI	CASTG	2 cut(s)	1026, 1431
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	5 cut(s)	72, 202, 926, 1174, 1673
Tsp45I	GTSAC	1 cut(s)	596
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	1026, 1431
VneI	GTGCAC	2 cut(s)	443, 1355
VpaK11BI	GGWCC	1 cut(s)	1458
VspI	ATTAAT	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	7 cut(s)	316, 415, 434, 740, 1056, 1366, 1576
XceI	RCATGY	2 cut(s)	188, 1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	3 cut(s)	1157, 1683, 1909
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.