Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010600.1

Orthogroup ID

OG0007167

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1423

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 794 bp

atgttcaagacatggagcaagaagaagaagataaaagctatattccaattgcagtttcaggcaacagaggtgccgaaattgaagaagcctgctttgatgatctctctggtgccggacgacgtgggaaagccgacggtgaaactggggaaggctgcggttcaggatgggacctgtacatgggaaaatccagtttatgagtcagtgaagctagtggaggaagcgaaatcagggaaactgaaagagaagatttatcacttcattgtttccagtggaacttcgaaatctggttatctcggagaagcttcaattgattttgcagattttgtggcagaaactgaacccttaactgtcactctaccccttaaatttgcgaattctggtgtagttttacatgtgacgattctcagggtgcaggaagatggtgattatagagaaattgaagaaaatgaggatcctagtctttcacgccatagcagcgtggacatccagaacagcaattgggatacagatggaagcaaccacctaagttttgaaaatggagcttttgatagaacaagtaatggtgccagttccttgtcaccccaaggaaaagactccatgcctcaaaatggaaaggctggtgccactgcaacaaaattaaccttggattggtcttctgatgaaagcttatttgactcaccaaatagagttgaagacaagcttccaacggaaaaagtgaaagatgtttcaggtgattccattgagaaactcagaaaggaaaatgcaatgctgatgaggcaggcggacatatcaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

264

Amino Acids

29.09

Weight (kDa)

5.4

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52280
fragaria_vesca	FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461 FvH4_7g29461
malus_domestica	MD01G1200700.v1.1 MD07G1268600.v1.1
prunus_persica	Prupe.2G294200_v2.0.a1 Prupe.2G294200_v2.0.a1
pyrus_communis	pycom01g21050 pycom07g24610 pycom07g24620
rosa_chinensis	RchiOBHm_Chr1g0377241
rosa_laevigata	RLG00000026532
rosa_multiflora	Rmu_sc0009231.1_g000002 Rmu_sc0010600.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281350
rosa_rugosa	Rorug01G0402600 Rorug01G0402600
rosa_samantha	Rh1AG419800 Rh1BG378800 Rh1CG392800 Rh1DG409400
rosa_wichuraiana	Rw1G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	70, 109, 563, 620
AciI	CCGC	2 cut(s)	155, 782
AclWI	GGATC	2 cut(s)	446, 459
AcsI	RAATTY	2 cut(s)	365, 373
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	177, 608, 648
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	7, 82, 306, 440, 533, 692
AjiI	CACGTC	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	6 cut(s)	38, 208, 302, 542, 666, 700
AluI	AGCT	6 cut(s)	38, 208, 302, 542, 666, 700
AlwI	GGATC	2 cut(s)	446, 459
AlwNI	CAGNNNCTG	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	152, 474
ApoI	RAATTY	2 cut(s)	365, 373
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	5 cut(s)	148, 434, 570, 669, 743
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	451
BanI	GGYRCC	4 cut(s)	70, 109, 563, 620
BbsI	GAAGAC	2 cut(s)	645, 699
BbvI	GCAGC	2 cut(s)	139, 486
BccI	CCATC	3 cut(s)	158, 413, 503
BciVI	GTATCC	1 cut(s)	496
BfaI	CTAG	2 cut(s)	209, 456
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	153, 475
BlsI	GCNGC	2 cut(s)	154, 476
Bme18I	GGWCC	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	6 cut(s)	72, 111, 169, 453, 565, 622
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BpiI	GAAGAC	2 cut(s)	645, 699
Bpu14I	TTCGAA	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	583, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 608, 648
Bse1I	ACTGG	4 cut(s)	147, 188, 267, 567
Bse3DI	GCAATG	1 cut(s)	771
BseDI	CCNNGG	2 cut(s)	583, 642
BseGI	GGATG	2 cut(s)	169, 483
BseLI	CCNNNNNNNGG	3 cut(s)	177, 608, 648
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	418, 763
BseNI	ACTGG	4 cut(s)	147, 188, 267, 567
BseXI	GCAGC	2 cut(s)	139, 486
BsgI	GTGCAG	1 cut(s)	431
BshNI	GGYRCC	4 cut(s)	70, 109, 563, 620
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	177, 608, 648
BsmFI	GGGAC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	99, 451
BspACI	CCGC	2 cut(s)	155, 782
BspCNI	CTCAG	2 cut(s)	417, 762
BspLI	GGNNCC	6 cut(s)	72, 111, 169, 453, 565, 622
BspPI	GGATC	2 cut(s)	446, 459
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	4 cut(s)	70, 109, 563, 620
BsrDI	GCAATG	1 cut(s)	771
BsrGI	TGTACA	1 cut(s)	173
BsrI	ACTGG	4 cut(s)	147, 188, 267, 567
BssECI	CCNNGG	2 cut(s)	583, 642
BssMI	GATC	2 cut(s)	99, 451
BssT1I	CCWWGG	2 cut(s)	583, 642
Bst4CI	ACNGT	2 cut(s)	136, 349
BstAUI	TGTACA	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	90, 780
BstDEI	CTNAG	3 cut(s)	404, 524, 749
BstF5I	GGATG	2 cut(s)	169, 483
BstKTI	GATC	2 cut(s)	102, 454
BstMBI	GATC	2 cut(s)	99, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 775
BstNSI	RCATGY	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	139, 486
BstV2I	GAAGAC	2 cut(s)	645, 699
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	496
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	169, 483
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	207, 274, 624
Cac8I	GCNNGC	2 cut(s)	90, 780
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	4 cut(s)	12, 177, 392, 598
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	3 cut(s)	404, 524, 749
DpnI	GATC	2 cut(s)	101, 453
DpnII	GATC	2 cut(s)	99, 451
Eco130I	CCWWGG	2 cut(s)	583, 642
Eco47I	GGWCC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	583, 642
ErhI	CCWWGG	2 cut(s)	583, 642
FaeI	CATG	4 cut(s)	15, 180, 395, 601
FaiI	YATR	9 cut(s)	13, 41, 178, 195, 393, 429, 471, 599, 788
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	4 cut(s)	11, 176, 391, 597
Fnu4HI	GCNGC	2 cut(s)	153, 475
FokI	GGATG	2 cut(s)	176, 470
Fsp4HI	GCNGC	2 cut(s)	153, 475
FspBI	CTAG	2 cut(s)	209, 456
GluI	GCNGC	2 cut(s)	153, 475
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	4 cut(s)	15, 180, 395, 601
HindIII	AAGCTT	3 cut(s)	300, 664, 698
HinfI	GANTC	5 cut(s)	197, 400, 593, 674, 734
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	5 cut(s)	148, 434, 570, 669, 743
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	296, 658, 752, 793
Hpy188III	TCNNGA	3 cut(s)	7, 161, 487
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	2 cut(s)	122, 136
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	136, 349
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	52, 317, 412, 629, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 775
HpyF3I	CTNAG	3 cut(s)	404, 524, 749
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	15, 180, 395, 601
Kzo9I	GATC	2 cut(s)	99, 451
LmnI	GCTCC	2 cut(s)	15, 539
Lsp1109I	GCAGC	2 cut(s)	139, 486
MaeI	CTAG	2 cut(s)	209, 456
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	349, 394, 576
MalI	GATC	2 cut(s)	101, 453
MboI	GATC	2 cut(s)	99, 451
MboII	GAAGA	9 cut(s)	34, 37, 40, 94, 256, 428, 452, 645, 704
MfeI	CAATTG	3 cut(s)	47, 306, 496
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	8 cut(s)	47, 77, 306, 365, 373, 435, 496, 635
MlyI	GAGTC	3 cut(s)	206, 587, 668
MmeI	TCCRAC	1 cut(s)	728
MnlI	CCTC	5 cut(s)	61, 208, 442, 612, 768
MseI	TTAA	3 cut(s)	344, 363, 638
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	3 cut(s)	47, 306, 496
MwoI	GCNNNNNNNGC	2 cut(s)	474, 775
NdeII	GATC	2 cut(s)	99, 451
NlaIII	CATG	4 cut(s)	15, 180, 395, 601
NlaIV	GGNNCC	6 cut(s)	72, 111, 169, 453, 565, 622
NmuCI	GTSAC	3 cut(s)	349, 394, 576
NspI	RCATGY	1 cut(s)	395
NspV	TTCGAA	1 cut(s)	278
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	400, 734
PkrI	GCNGC	2 cut(s)	154, 476
PleI	GAGTC	3 cut(s)	205, 587, 668
PpsI	GAGTC	3 cut(s)	205, 587, 668
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	6 cut(s)	72, 111, 169, 453, 565, 622
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	344, 363, 638
SatI	GCNGC	2 cut(s)	153, 475
Sau3AI	GATC	2 cut(s)	99, 451
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	3 cut(s)	206, 587, 668
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	8 cut(s)	47, 77, 306, 365, 373, 435, 496, 635
SsiI	CCGC	2 cut(s)	155, 782
SspMI	CTAG	2 cut(s)	209, 456
StyI	CCWWGG	2 cut(s)	583, 642
TaaI	ACNGT	2 cut(s)	136, 349
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	278
TasI	AATT	8 cut(s)	47, 77, 306, 365, 373, 435, 496, 635
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	400, 734
Tru1I	TTAA	3 cut(s)	344, 363, 638
Tru9I	TTAA	3 cut(s)	344, 363, 638
TscAI	CASTG	3 cut(s)	207, 274, 631
TseFI	GTSAC	3 cut(s)	349, 394, 576
TseI	GCWGC	2 cut(s)	152, 474
Tsp45I	GTSAC	3 cut(s)	349, 394, 576
TspDTI	ATGAA	2 cut(s)	247, 675
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	3 cut(s)	207, 274, 631
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	2 cut(s)	365, 373
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	2 cut(s)	209, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.